genome.fa.s15.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  158  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50972869--50972961	48	1.9	48	89	4	143	21	24	7	46	1.77
50973208--50973339	54	2.4	54	81	2	140	18	32	22	25	1.97
50974258--50974305	18	2.5	19	86	6	62	20	25	2	52	1.58
50975100--50975191	40	2.3	40	96	0	166	40	21	4	33	1.73
50975495--50975551	26	2.2	26	81	6	62	52	7	3	36	1.46
50975919--50975951	17	1.9	17	93	0	57	39	12	0	48	1.40
50985905--50986018	45	2.5	45	78	2	131	38	14	23	23	1.91
50992134--50992269	19	6.8	19	80	9	146	37	11	13	37	1.81
50992135--50992241	40	2.7	40	85	2	155	38	12	13	36	1.81
50992869--50992904	15	2.4	15	90	0	54	30	8	2	58	1.42
50992883--50992929	25	1.9	24	87	12	69	34	8	0	57	1.29
50993600--50993796	98	2.0	98	95	0	358	29	10	23	37	1.88
50994513--50994553	18	2.4	18	88	8	59	63	0	12	24	1.28
50999340--50999491	27	5.6	27	93	3	241	30	28	13	26	1.94
50999340--50999516	55	3.2	55	90	0	255	31	29	13	25	1.94
51008223--51008258	18	2.1	18	94	5	65	50	2	11	36	1.53
51010048--51010138	40	2.3	38	86	5	119	45	28	15	10	1.80
51013974--51014040	20	3.0	22	77	18	68	58	4	0	37	1.19
51015597--51015623	4	6.8	4	100	0	54	22	0	0	77	0.76
51018677--51018881	76	2.7	77	84	6	267	35	12	8	43	1.73
51019284--51019560	77	3.6	75	76	10	222	37	8	12	40	1.75
51019377--51019558	76	2.4	77	78	9	192	39	9	11	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021610--51021654	24	1.9	24	90	4	74	40	4	11	44	1.60
51027769--51027811	21	2.0	21	86	8	61	55	4	0	39	1.20
51028092--51028139	21	2.3	21	82	10	62	58	4	0	37	1.18
51028092--51028134	22	2.0	22	86	8	63	62	4	0	32	1.15
51030923--51031276	125	2.8	126	90	3	588	29	15	21	33	1.95
51034466--51034490	7	3.6	7	100	0	50	60	12	0	28	1.32
51035449--51035479	15	2.0	16	93	6	55	67	6	0	25	1.14
51035572--51035628	10	5.5	10	75	8	51	66	0	0	33	0.92
51035684--51035734	22	2.3	22	100	0	102	39	0	33	27	1.57
51043813--51043880	29	2.3	29	85	5	75	50	2	5	41	1.42
51044311--51044354	20	2.2	21	84	8	56	36	0	6	56	1.26
51044451--51044521	23	3.0	23	81	4	97	36	2	1	59	1.21
51048261--51048347	40	2.2	40	82	2	102	37	24	19	18	1.94
51048278--51048384	40	2.7	40	81	4	119	42	21	16	19	1.90
51048443--51048630	41	4.8	41	82	7	203	20	22	25	30	1.98
51050163--51050225	20	3.1	20	77	11	74	50	0	4	44	1.23
51050166--51050225	10	5.8	10	78	11	59	48	0	5	46	1.24
51052608--51052676	5	13.2	5	72	17	52	20	2	2	73	1.09
51052606--51052695	31	3.2	31	70	26	99	20	3	3	73	1.12
51053379--51053406	12	2.3	12	100	0	56	32	7	10	50	1.64
51054654--51055005	43	8.3	42	76	4	330	25	15	28	30	1.96
51054651--51055005	86	4.2	86	82	4	416	24	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51054680--51055005	169	1.9	172	85	5	448	24	15	28	31	1.96
51059814--51064035	703	6.0	702	94	2	7045	37	12	13	37	1.82
51067258--51067291	8	4.1	8	88	3	50	82	0	14	2	0.79
51068132--51068166	18	2.0	18	88	5	54	11	34	34	20	1.88
51071143--51071229	27	3.2	26	70	15	70	20	21	34	22	1.97
51074607--51074710	45	2.3	45	80	6	129	0	31	0	66	1.05
51074647--51074719	35	2.1	35	87	10	105	0	35	1	63	1.04
51077620--51077699	29	2.8	29	77	7	90	32	25	15	27	1.95
51085874--51085904	16	1.9	16	100	0	62	35	0	6	58	1.24
51090024--51090057	18	1.9	18	88	5	52	26	29	35	8	1.87
51090530--51090623	40	2.3	40	81	0	107	23	14	30	30	1.95
51091479--51091546	27	2.5	28	85	7	95	36	10	0	52	1.35
51092822--51092865	19	2.2	20	88	4	63	40	2	11	45	1.53
51096196--51096239	19	2.3	19	88	7	63	25	20	0	54	1.45
51111909--51111939	7	4.4	7	95	0	53	22	3	0	74	0.96
51112711--51112743	13	2.4	14	90	10	50	48	0	3	48	1.17
51115629--51115704	29	2.5	31	82	4	93	25	11	14	48	1.77
51115632--51115704	31	2.4	29	81	4	83	26	12	13	47	1.78
51117107--51117219	59	1.9	57	82	7	138	43	3	8	44	1.52
51127096--51127126	8	3.9	8	91	0	53	51	12	0	35	1.40
51128371--51128402	9	3.6	9	95	0	55	25	9	21	43	1.82
51130115--51130307	26	7.3	26	86	1	251	33	11	25	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51130113--51130334	78	2.8	79	83	3	259	35	12	25	27	1.91
51130293--51130351	27	2.2	27	78	0	64	40	15	23	20	1.90
51137738--51138091	43	8.3	42	78	3	348	25	16	28	29	1.97
51137735--51138091	86	4.2	86	83	4	418	24	17	28	29	1.97
51147560--51147594	8	4.1	8	89	10	52	82	0	14	2	0.77
51147560--51147594	17	2.1	17	89	10	54	82	0	14	2	0.77
51147975--51148006	13	2.4	14	85	15	50	53	9	12	25	1.68
51151321--51151350	9	3.2	9	95	4	51	73	0	0	26	0.84
51151368--51151401	17	1.9	17	88	5	50	82	5	2	8	0.93
51151438--51151529	27	3.4	27	76	11	89	20	21	33	23	1.97
51151774--51151841	3	22.7	3	93	0	118	32	0	2	64	1.08
51154134--51154588	161	2.9	150	73	15	416	31	10	8	49	1.68
51154134--51154588	157	2.9	152	72	16	417	31	10	8	49	1.68
51154985--51155056	35	2.1	34	87	12	103	0	36	1	62	1.04
51155292--51155324	2	16.5	2	93	0	57	0	45	0	54	0.99
51157951--51158030	29	2.8	29	77	7	90	32	25	15	27	1.95
51167199--51167237	18	2.2	18	85	0	51	61	2	23	12	1.43
51171001--51171031	16	1.9	16	100	0	62	35	0	6	58	1.24
51176547--51176584	20	1.9	20	88	0	58	39	13	7	39	1.73
51176604--51176669	26	2.5	27	85	11	93	37	10	0	51	1.37
51177257--51177289	10	3.3	10	100	0	66	48	0	0	51	1.00
51177257--51177295	20	2.0	20	89	0	60	46	2	2	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51177153--51177771	234	2.5	251	79	8	706	37	9	6	45	1.63
51177953--51177998	19	2.3	20	85	3	67	41	2	10	45	1.51
51181350--51181393	19	2.3	19	88	7	63	25	20	0	54	1.45
51184109--51184157	24	2.2	23	85	10	66	32	16	0	51	1.45
51195077--51195107	7	4.4	7	95	0	53	22	3	0	74	0.96
51195876--51195908	13	2.4	14	90	10	50	48	0	3	48	1.17
51198796--51198871	29	2.5	31	82	4	93	25	11	14	48	1.77
51198799--51198871	31	2.4	29	81	4	83	26	12	13	47	1.78
51200308--51200415	58	1.9	56	81	7	128	42	3	10	43	1.56
51203010--51203191	73	2.5	73	99	0	355	41	24	6	28	1.80
51203196--51203224	3	9.7	3	100	0	58	68	0	0	31	0.89
51207555--51207595	3	13.7	3	100	0	82	68	0	0	31	0.90
51215115--51215145	8	3.9	8	91	0	53	51	12	0	35	1.40
51216391--51216422	9	3.6	9	95	0	55	25	9	21	43	1.82
51218105--51218272	26	6.4	26	86	2	219	33	11	25	29	1.92
51224598--51224691	47	2.0	47	100	0	188	27	12	12	46	1.78
51225379--51225410	15	2.1	16	94	5	57	53	0	3	43	1.16
51225531--51225638	52	2.1	52	87	0	153	34	5	17	42	1.73
51227260--51227297	15	2.5	15	87	8	51	60	2	0	36	1.11
51228592--51228870	116	2.3	118	85	4	366	25	26	17	30	1.97
51228847--51229129	96	3.0	96	82	7	298	27	25	17	29	1.97
51228977--51229155	45	4.0	45	88	1	270	31	22	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51229483--51229707	88	2.6	87	82	4	265	22	24	25	27	2.00
51229688--51229854	87	1.9	87	88	0	253	25	25	20	28	1.99
51229810--51230140	88	3.8	88	80	8	302	28	24	19	28	1.98
51229810--51230140	132	2.5	132	79	4	337	28	24	19	28	1.98
51229698--51230140	44	10.1	43	78	6	259	27	24	19	28	1.99
51232068--51232184	57	2.1	57	100	0	234	35	18	11	35	1.87
51236836--51236869	9	3.7	9	84	7	50	52	11	2	32	1.53
51236836--51236872	19	1.9	19	94	0	65	51	10	5	32	1.60
51236826--51236951	54	2.3	54	90	0	207	42	15	9	32	1.79
51236890--51236928	19	2.1	19	90	0	60	51	12	7	28	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222