genome.fa.s15.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  52  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15558265--15558305	13	3.2	12	80	12	55	58	0	0	41	0.98
15557921--15558527	242	2.5	240	92	0	980	50	4	1	42	1.34
15560240--15560269	13	2.3	13	94	0	51	30	13	6	50	1.67
15560420--15560458	19	2.1	19	95	0	69	41	15	17	25	1.89
15561489--15561525	19	1.9	19	94	0	65	37	21	29	10	1.88
15561551--15561575	5	5.0	5	100	0	50	80	0	20	0	0.72
15565417--15565454	15	2.6	15	83	4	51	47	31	0	21	1.51
15565410--15565459	21	2.3	21	80	10	57	48	28	0	24	1.52
15565794--15566274	40	12.1	40	76	7	462	28	22	20	29	1.98
15565794--15566130	120	2.8	120	90	0	521	28	22	20	28	1.98
15566183--15566274	41	2.3	40	86	1	130	22	20	25	31	1.98
15571317--15571406	20	4.4	20	77	14	96	43	0	4	52	1.21
15577185--15577209	13	1.9	13	100	0	50	40	20	8	32	1.81
15579539--15579592	6	9.0	6	97	0	99	48	0	35	16	1.47
15588493--15588527	15	2.4	15	90	4	54	48	0	8	42	1.33
15608435--15608493	22	2.7	21	74	10	55	62	3	0	33	1.12
15610960--15611019	30	2.0	31	96	3	113	26	18	6	48	1.72
15612350--15612414	30	2.2	30	97	0	121	32	0	30	36	1.58
15626141--15626197	15	3.5	15	69	17	51	45	0	3	50	1.18
15626231--15626269	13	2.9	14	92	7	64	46	0	0	53	1.00
15638845--15639022	27	6.6	27	81	3	169	29	28	15	27	1.96
15638845--15639022	54	3.3	55	81	3	191	29	28	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15641264--15641299	13	2.6	14	86	13	56	27	27	0	44	1.55
15641794--15641889	20	4.8	21	82	8	87	41	21	28	8	1.82
15641816--15641889	20	3.7	20	88	0	103	41	22	27	8	1.82
15647188--15647234	19	2.5	19	100	0	94	31	21	0	46	1.51
15650442--15650568	29	4.4	29	78	4	121	24	16	22	36	1.94
15650753--15650820	16	4.2	16	96	0	118	27	0	36	35	1.58
15650801--15650895	45	2.1	44	88	1	136	34	5	27	32	1.79
15651057--15651091	18	2.0	17	88	5	52	54	0	0	45	0.99
15651015--15651087	27	2.7	27	76	8	76	52	2	0	45	1.15
15651204--15651238	18	2.0	17	88	5	52	54	0	0	45	0.99
15650976--15651250	147	1.9	149	96	1	509	46	3	2	47	1.32
15651224--15651402	59	3.1	54	64	22	128	48	7	2	41	1.45
15651187--15651479	120	2.4	120	90	2	473	49	5	2	42	1.37
15651434--15651465	16	1.9	17	93	6	57	46	0	0	53	1.00
15651495--15651683	91	2.1	91	85	2	254	48	3	4	44	1.38
15652216--15652245	12	2.5	12	94	0	51	43	20	23	13	1.86
15652505--15652535	14	2.2	14	100	0	62	45	29	6	19	1.75
15656751--15656795	19	2.6	17	86	10	56	62	0	0	37	0.96
15656762--15656805	19	2.2	20	92	4	72	65	4	0	29	1.12
15657750--15657784	18	1.9	18	94	0	61	68	0	0	31	0.90
15661780--15661809	9	3.3	9	90	0	51	23	13	23	40	1.90
15661863--15661899	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15662113--15662172	30	2.0	31	86	3	86	20	40	0	40	1.52
15663954--15664025	29	2.5	29	76	10	67	36	6	8	48	1.60
15664579--15664637	30	1.9	30	86	3	82	35	15	8	40	1.77
15669383--15669407	13	1.9	13	100	0	50	32	16	16	36	1.90
15671283--15671361	25	3.3	25	69	16	85	35	3	29	31	1.75
15671258--15671411	47	3.3	47	93	0	272	33	7	29	29	1.84
15681352--15681433	40	2.0	40	97	0	155	35	20	18	25	1.95
15688020--15688089	35	2.0	35	88	2	104	41	17	20	21	1.90
15690642--15690701	23	2.6	22	82	7	66	41	8	8	41	1.65
15692586--15692628	21	2.1	20	82	4	50	30	0	13	55	1.39
15704589--15704714	20	6.3	20	71	3	110	36	19	30	14	1.91
15704609--15704714	40	2.7	39	89	0	158	37	18	29	14	1.90
15704584--15704698	60	1.9	60	83	0	149	37	17	31	13	1.89
15711029--15711122	46	2.0	46	93	0	161	31	27	3	37	1.73
15712148--15712185	19	2.1	18	85	14	51	52	10	0	36	1.36
15714276--15714324	24	2.0	24	88	0	71	22	22	8	46	1.77
15722518--15722561	20	2.2	20	87	0	61	52	18	18	11	1.74
15722538--15722641	40	2.6	40	83	3	129	38	14	27	19	1.90
15724884--15724929	21	2.2	21	92	0	74	21	17	39	21	1.93
15726732--15726792	30	2.0	30	96	0	113	45	16	14	22	1.84
15736379--15736434	19	2.9	19	91	0	85	42	16	7	33	1.75
15737989--15738020	16	2.0	16	93	0	55	25	15	0	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15738150--15738240	46	2.0	46	89	4	139	31	28	17	21	1.96
15740020--15740101	42	2.0	42	83	9	105	30	23	14	31	1.94
15742889--15742920	16	2.0	16	93	0	55	25	15	0	59	1.36
15743148--15743338	51	3.8	51	73	9	185	30	26	17	25	1.97
15743146--15743330	101	1.8	102	87	5	277	30	25	18	24	1.98
15747891--15747949	22	2.7	21	75	10	55	44	15	5	35	1.68
15748676--15748793	44	2.7	44	85	5	141	27	24	18	28	1.98
15748759--15748935	34	4.9	34	83	15	230	27	26	21	24	1.99
15748715--15749016	78	3.9	78	80	15	333	28	27	18	25	1.98
15748793--15749064	44	6.6	44	82	13	327	28	27	19	25	1.98
15748759--15748984	112	2.0	112	93	1	391	27	26	19	25	1.99
15751181--15751246	25	2.6	25	83	9	71	56	6	18	19	1.62
15765207--15765235	6	4.8	6	100	0	58	0	13	0	86	0.58
15766054--15766119	25	2.6	25	83	9	71	56	6	18	19	1.62
15769923--15769961	3	13.0	3	100	0	78	66	0	0	33	0.92
15770868--15770934	22	3.0	22	82	6	73	38	16	7	37	1.77
15770881--15770941	22	2.7	22	89	2	86	34	18	9	37	1.83
15786110--15786175	20	3.3	20	89	0	105	9	28	19	42	1.82
15786114--15786304	40	4.8	40	86	1	249	17	25	18	37	1.93
15787327--15787372	19	2.4	19	89	7	67	23	17	2	56	1.52
15793681--15793797	40	2.9	40	79	0	126	19	25	17	36	1.94
15800812--15800996	40	4.7	40	82	6	216	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15800812--15800996	79	2.3	82	82	7	220	25	26	22	25	2.00
15808797--15808981	40	4.7	40	84	6	225	25	27	22	24	2.00
15808797--15808981	79	2.3	82	83	7	229	25	27	22	24	2.00
15818797--15818832	12	3.0	12	83	0	54	16	16	0	66	1.25
15827764--15827807	16	2.6	16	82	7	52	2	15	0	81	0.78
15830707--15830736	15	1.9	16	93	6	53	56	0	0	43	0.99
15833297--15833337	20	2.0	20	90	0	64	9	24	19	46	1.80
15834026--15834072	21	2.3	21	92	3	78	10	14	23	51	1.74
15836434--15836512	41	1.9	42	86	2	115	16	37	25	20	1.93
15836551--15836673	42	2.9	42	75	0	129	21	30	22	26	1.99
15836699--15836779	42	1.9	42	89	0	126	14	37	28	19	1.92
15844831--15845285	47	9.6	47	89	3	689	32	8	29	29	1.86
15844831--15845285	96	4.8	96	89	4	685	32	8	29	29	1.86
15856932--15857263	171	2.0	169	94	1	583	38	8	35	17	1.80
15858359--15858423	27	2.4	27	87	2	87	33	12	10	43	1.77
15862043--15862074	6	5.7	6	85	14	50	15	0	0	84	0.63
15862044--15862074	11	2.8	11	100	0	62	16	0	0	83	0.64
15863215--15863266	3	17.7	3	80	4	61	30	0	3	65	1.10
15869628--15869728	51	2.0	51	88	0	148	30	14	24	29	1.95
15869710--15869749	21	1.9	21	85	10	55	40	5	32	22	1.76
15869740--15869878	51	2.7	50	81	4	161	31	21	21	25	1.98
15869625--15870060	123	3.4	123	75	10	415	31	16	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15869880--15869993	51	2.2	51	85	0	147	35	14	20	30	1.92
15870067--15870676	89	6.8	88	80	5	361	32	18	20	29	1.96
15870068--15870543	44	10.6	44	75	4	349	31	17	21	28	1.96
15870113--15870353	133	1.8	132	80	2	295	32	18	19	28	1.96
15870432--15870591	51	3.3	51	76	10	206	33	17	20	28	1.95
15870293--15870636	96	3.7	96	85	4	406	33	18	20	28	1.96
15872188--15872239	3	17.7	3	80	4	61	30	0	3	65	1.10
15874477--15874513	9	4.1	9	92	0	65	45	13	10	29	1.77
15876565--15876591	4	6.8	4	100	0	54	22	0	0	77	0.76
15879273--15879392	56	2.1	56	98	0	231	45	9	23	22	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222