genome.fa.s15.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  204  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64600442--64600661	54	4.1	55	85	11	292	37	17	15	29	1.90
64600442--64600641	107	1.9	107	91	3	330	35	18	15	31	1.92
64600640--64600674	14	2.5	14	90	0	52	60	2	17	20	1.49
64600643--64600831	105	1.8	105	87	4	283	40	17	15	26	1.90
64600760--64601006	85	2.8	86	81	11	306	36	19	18	26	1.94
64600760--64601013	90	2.9	89	83	9	335	37	18	18	26	1.93
64601133--64601739	192	3.2	192	97	2	1165	35	20	14	29	1.92
64601378--64601739	69	5.5	66	73	13	275	34	21	14	30	1.93
64601447--64601669	118	1.9	118	83	3	293	34	21	14	30	1.93
64613505--64613666	17	9.4	17	76	10	150	47	10	12	29	1.74
64613537--64613645	35	3.2	33	81	11	123	48	8	12	30	1.71
64613843--64613889	20	2.5	19	77	16	53	44	8	17	29	1.78
64621027--64621361	132	2.5	132	86	1	465	29	19	24	26	1.98
64622112--64622153	8	4.9	9	88	11	54	21	9	0	69	1.17
64622116--64622154	18	2.2	18	90	9	62	20	7	0	71	1.10
64622112--64622161	26	2.0	25	84	11	66	20	8	0	72	1.10
64628808--64628907	41	2.5	42	87	8	136	24	25	14	37	1.92
64630174--64630305	51	2.6	51	85	2	176	22	16	28	32	1.96
64630227--64630307	26	3.2	26	62	28	64	22	14	29	33	1.94
64630309--64630401	45	2.1	45	91	0	150	25	20	23	30	1.99
64630673--64630725	26	2.0	26	100	0	106	47	11	11	30	1.74
64631933--64631989	21	2.8	20	76	20	55	38	1	15	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64634037--64634062	13	2.0	13	100	0	52	53	0	15	30	1.42
64634521--64634580	31	2.0	30	90	3	93	50	6	5	38	1.51
64634937--64635061	59	2.1	59	86	0	169	38	21	12	27	1.90
64638168--64638219	27	1.9	27	96	0	95	13	25	32	28	1.93
64638091--64638356	103	2.6	103	89	3	401	19	19	30	30	1.97
64645727--64646161	208	2.1	208	83	9	537	29	0	16	53	1.49
64645725--64646161	106	4.2	107	83	7	517	29	0	16	53	1.49
64647238--64647339	50	2.0	50	96	0	186	26	21	22	29	1.99
64648212--64648287	33	2.3	33	83	0	89	15	42	14	27	1.86
64648451--64648640	75	2.6	72	83	9	226	30	5	11	52	1.61
64651569--64651623	19	3.0	19	73	5	51	58	16	1	23	1.48
64654839--64655048	106	2.0	106	86	3	298	28	16	15	39	1.89
64657095--64657122	8	3.5	8	100	0	56	25	0	0	75	0.81
64658899--64658958	30	2.0	31	87	9	88	48	21	8	21	1.76
64659057--64659105	10	5.4	9	77	22	50	24	0	8	67	1.18
64659056--64659124	18	3.8	18	75	17	63	27	0	8	63	1.23
64659056--64659136	26	3.0	26	79	16	78	28	0	8	62	1.24
64661979--64662086	11	10.5	11	62	20	54	53	5	0	39	1.30
64661982--64662086	15	6.9	15	64	26	51	54	5	0	39	1.31
64661982--64662086	31	3.4	31	79	7	124	54	5	0	39	1.31
64661979--64662108	61	2.1	61	94	0	224	50	6	0	42	1.32
64663506--64663535	12	2.5	12	94	0	51	60	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64664423--64664693	136	2.0	136	98	0	524	23	20	13	42	1.87
64665877--64665930	25	2.2	25	82	0	63	29	16	18	35	1.93
64670108--64670144	3	12.3	3	100	0	74	32	0	0	67	0.91
64673795--64673829	5	7.0	5	86	0	52	5	54	20	20	1.64
64679927--64679961	16	2.2	16	89	0	52	22	17	17	42	1.88
64682578--64682609	13	2.5	13	100	0	64	81	6	6	6	0.99
64684727--64685222	252	2.0	252	91	0	796	29	21	24	24	1.99
64685202--64685693	50	9.8	50	73	0	365	31	21	21	25	1.98
64685208--64685719	100	5.1	100	88	0	657	32	20	20	25	1.98
64685829--64685924	44	2.2	44	81	3	104	27	21	26	25	2.00
64686005--64686204	88	2.3	88	82	6	228	28	21	26	25	1.99
64686005--64686120	44	2.6	44	100	0	232	27	18	27	25	1.98
64687436--64687528	3	31.3	3	72	10	57	36	3	2	58	1.27
64693231--64693271	21	2.0	21	90	0	64	19	29	21	29	1.98
64712210--64712244	18	2.0	17	88	5	52	45	0	0	54	0.99
64712404--64712498	45	2.1	44	88	1	136	33	27	6	32	1.82
64712479--64712528	16	3.1	16	94	0	82	34	36	0	30	1.58
64720087--64720131	21	2.1	22	87	4	65	22	8	6	62	1.48
64722540--64722658	60	2.0	60	91	0	193	32	0	11	54	1.43
64724409--64724463	15	3.9	14	79	9	58	36	1	0	61	1.06
64724421--64724465	21	2.2	20	84	4	54	37	2	0	60	1.09
64724415--64724461	14	3.2	14	82	17	60	36	2	0	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64729768--64729811	15	2.9	15	86	0	61	4	72	6	15	1.22
64736548--64736590	24	1.9	24	81	13	56	32	13	4	48	1.63
64738916--64738983	27	2.5	27	87	2	91	38	1	0	60	1.06
64740765--64740866	49	2.1	50	94	1	179	30	14	13	41	1.85
64746586--64746665	12	6.4	12	71	13	63	2	18	3	75	1.07
64746644--64746682	13	3.1	13	85	3	53	12	7	0	79	0.93
64753249--64753277	3	9.7	3	100	0	58	65	0	0	34	0.93
64765865--64765905	18	2.2	19	86	8	57	65	4	7	21	1.37
64766362--64766426	34	1.9	34	87	3	96	30	4	4	60	1.37
64767605--64767677	23	3.1	23	83	11	103	24	23	17	34	1.96
64767604--64767673	24	3.0	23	82	12	97	27	24	17	31	1.97
64768176--64768232	28	2.0	28	100	0	114	21	28	10	40	1.86
64770471--64770520	26	2.0	25	88	4	73	56	26	2	16	1.51
64774516--64774561	21	2.2	20	88	3	65	65	4	2	28	1.23
64785755--64785793	20	1.9	21	85	15	55	46	12	15	25	1.81
64800259--64800317	27	2.2	27	84	3	75	16	22	20	40	1.91
64800393--64800454	24	2.6	24	77	10	72	17	24	20	37	1.94
64800415--64800511	25	3.9	25	79	1	106	20	24	19	35	1.96
64800505--64800529	12	2.1	12	100	0	50	28	16	40	16	1.89
64801682--64801773	42	2.2	42	96	0	175	17	31	33	17	1.93
64806134--64806203	28	2.5	28	76	2	68	20	35	21	22	1.96
64819132--64819172	21	2.0	21	95	0	73	19	26	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64827049--64827090	13	3.2	13	82	0	57	50	0	0	50	1.00
64827050--64827083	15	2.3	15	89	0	50	47	0	0	52	1.00
64832559--64832694	69	2.0	67	89	2	209	37	2	7	52	1.41
64835558--64835754	35	5.6	35	77	7	166	18	11	28	41	1.85
64835558--64835718	70	2.3	70	82	6	193	20	11	27	40	1.86
64843200--64844107	452	2.0	452	100	0	1816	26	24	13	35	1.92
64847126--64847157	6	4.9	7	85	14	50	75	0	12	12	1.06
64847126--64847157	13	2.4	14	85	15	50	75	0	12	12	1.06
64848936--64848972	18	2.0	19	85	15	51	45	2	5	45	1.40
64852520--64852697	45	4.0	45	79	5	164	33	24	15	26	1.95
64852542--64852708	90	1.9	90	82	7	214	32	24	15	26	1.95
64852542--64852723	45	4.0	45	78	4	118	32	25	15	26	1.95
64853133--64853268	50	2.7	49	86	5	184	18	33	21	26	1.96
64857840--64857933	27	3.3	26	71	21	64	43	1	2	53	1.19
64866579--64866606	6	4.7	6	100	0	56	32	0	50	17	1.47
64866870--64866895	11	2.4	11	100	0	52	11	30	7	50	1.67
64869456--64869487	16	2.0	16	93	0	55	15	3	0	81	0.82
64875366--64875429	24	2.7	24	81	13	78	62	3	3	31	1.26
64880679--64880720	19	2.3	19	84	12	52	14	4	9	71	1.28
64889179--64889217	7	5.7	7	90	3	62	23	0	0	76	0.78
64889225--64889275	20	2.3	23	81	18	65	35	0	1	62	1.06
64894009--64894054	14	3.2	14	78	21	51	52	6	4	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64895482--64895529	23	2.2	23	78	10	57	35	2	0	62	1.07
64909848--64909878	9	3.4	9	90	0	53	41	22	9	25	1.84
64910180--64910223	18	2.4	18	92	0	70	11	2	45	40	1.53
64911190--64911214	7	3.6	7	100	0	50	72	12	0	16	1.13
64913507--64913569	26	2.4	26	89	5	92	36	14	6	42	1.71
64925646--64925680	18	1.9	18	88	11	54	34	17	5	42	1.73
64926941--64927111	89	1.9	89	97	0	324	45	19	13	21	1.84
64932718--64932745	14	2.0	14	100	0	56	28	7	0	64	1.20
64935557--64935603	19	2.5	20	76	16	55	44	2	12	40	1.54
64936380--64936501	41	3.0	41	93	4	219	29	18	27	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222