genome.fa.s15.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  205  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64937881--64938056	50	3.5	50	85	1	167	22	28	21	27	1.99
64937923--64938057	50	2.7	50	92	0	216	20	31	22	26	1.98
64941409--64941439	2	15.5	2	93	0	53	48	48	3	0	1.17
64943429--64943497	36	1.9	36	100	0	138	31	8	27	31	1.87
64943490--64943519	15	2.1	15	93	6	53	0	6	10	83	0.81
64947599--64947650	25	2.0	27	82	14	65	48	5	1	44	1.38
64947843--64947867	13	1.9	13	100	0	50	64	0	4	32	1.12
64948849--64948889	14	2.9	15	85	7	50	31	17	0	51	1.46
64955913--64956007	48	2.0	48	91	0	154	32	4	38	24	1.74
64963841--64963961	43	2.7	43	86	7	170	10	14	9	64	1.49
64963841--64963962	47	2.7	45	88	7	194	10	14	9	64	1.49
64964491--64964586	31	3.1	31	95	3	174	45	13	9	31	1.75
64965307--64965356	25	2.0	25	100	0	100	24	24	16	36	1.94
64968298--64968338	3	13.7	3	100	0	82	31	0	0	68	0.90
64969063--64969113	20	2.5	21	78	15	61	31	3	1	62	1.24
64975065--64975089	3	8.3	3	100	0	50	68	0	0	32	0.90
64994985--64995083	10	9.7	10	77	12	67	45	1	2	51	1.19
64995021--64995078	5	11.8	5	98	1	109	41	0	0	58	0.98
64995078--64995128	24	2.1	25	85	3	68	74	3	15	5	1.16
64996044--64996183	40	3.5	40	77	10	144	25	17	25	32	1.97
64997910--64998153	46	5.6	45	81	14	287	29	22	13	34	1.92
64998045--64998117	36	2.0	36	91	0	119	30	20	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64997999--64998153	82	1.9	82	95	0	283	30	21	11	36	1.89
65004003--65004056	27	2.0	27	88	0	81	33	0	1	64	1.04
65004706--65004739	17	2.0	17	88	0	50	44	2	2	50	1.32
65006555--65006628	37	2.0	37	100	0	148	32	27	2	37	1.71
65016853--65016889	19	2.0	18	89	5	56	29	5	2	62	1.31
65030435--65030607	53	3.3	51	79	10	179	45	14	12	27	1.81
65032381--65032410	7	4.3	7	100	0	60	33	0	0	66	0.92
65044820--65044862	22	1.9	23	90	4	70	58	11	6	23	1.57
65056592--65056646	27	2.0	27	82	10	67	38	3	9	49	1.52
65066886--65067030	65	2.2	65	80	9	161	56	2	3	37	1.28
65066914--65067006	9	10.1	9	72	13	73	59	2	3	35	1.26
65066954--65067022	18	3.7	18	71	17	52	53	0	5	40	1.25
65066953--65067038	35	2.4	38	81	11	92	56	0	5	37	1.23
65067715--65067747	17	1.9	17	88	11	50	27	0	3	69	1.03
65067625--65067739	50	2.4	48	80	8	142	29	0	3	66	1.14
65070486--65070536	19	2.7	19	93	0	84	13	27	39	19	1.90
65071509--65071616	40	2.7	40	85	2	137	30	12	22	34	1.92
65073379--65073436	29	1.9	30	89	6	91	36	0	43	20	1.52
65073379--65073439	30	2.0	31	87	9	90	36	0	42	21	1.53
65073488--65073524	9	4.1	9	85	0	56	27	10	13	48	1.75
65077139--65077171	16	2.1	16	100	0	66	45	36	12	6	1.66
65084886--65084917	15	2.2	14	94	5	55	9	18	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65090617--65090701	17	4.9	17	70	17	50	74	4	10	10	1.21
65090627--65090721	50	1.9	50	81	12	117	73	4	12	9	1.22
65092814--65092954	43	3.3	43	87	3	185	31	22	21	24	1.98
65093019--65093383	50	7.3	50	73	7	303	32	22	18	25	1.97
65092969--65093397	100	4.3	99	87	3	547	32	22	19	25	1.98
65102419--65102498	2	46.5	2	69	28	51	47	0	1	51	1.08
65102419--65102496	16	4.7	17	81	12	92	47	0	1	51	1.09
65102418--65102501	30	2.9	28	73	15	80	48	0	1	50	1.08
65102422--65102497	5	16.0	5	72	15	63	46	0	1	52	1.08
65102793--65102839	24	2.0	24	84	16	62	31	0	17	51	1.46
65111860--65112034	37	4.8	37	95	0	298	39	14	20	25	1.90
65111997--65112120	46	2.8	46	91	3	200	33	16	22	27	1.96
65119536--65119711	37	4.8	37	96	0	307	39	14	21	25	1.91
65119674--65119797	46	2.8	46	91	3	200	33	16	22	27	1.96
65135776--65135854	2	45.5	2	70	26	56	46	0	1	51	1.08
65135779--65135853	5	16.0	5	72	18	63	45	0	1	53	1.08
65135777--65135843	7	9.7	7	81	12	61	46	0	1	52	1.09
65136148--65136194	24	2.0	24	84	16	62	31	0	17	51	1.46
65136170--65136227	17	3.7	14	75	20	53	34	0	13	51	1.42
65145249--65145424	37	4.8	37	94	0	280	39	13	21	26	1.90
65145387--65145510	46	2.8	46	91	3	200	33	16	22	27	1.96
65152939--65153114	37	4.8	37	96	0	298	39	13	21	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65153077--65153200	46	2.8	46	91	3	200	33	16	22	27	1.96
65155191--65155405	88	2.4	88	88	0	322	27	19	23	29	1.98
65155384--65155427	22	2.0	22	100	0	88	18	27	27	27	1.98
65155296--65155515	110	2.0	110	92	0	368	27	21	23	27	1.99
65155449--65155587	44	3.2	44	64	4	118	27	18	23	30	1.98
65155208--65155603	198	2.0	198	89	1	614	27	20	23	28	1.99
65155406--65155834	88	4.8	88	79	7	430	28	18	23	28	1.98
65155468--65155834	186	2.0	186	87	2	540	29	17	23	29	1.97
65158122--65158176	23	2.4	23	87	6	76	30	7	20	41	1.79
65160425--65160491	3	22.7	3	82	14	86	32	2	1	62	1.19
65167929--65167976	21	2.3	20	80	16	53	27	4	6	62	1.38
65167930--65167977	22	2.2	21	82	10	53	25	4	6	64	1.35
65183577--65183664	25	3.6	24	74	10	88	15	23	23	36	1.94
65183649--65183746	50	2.0	50	80	8	110	17	21	23	37	1.94
65183799--65183874	25	3.0	25	80	16	93	21	27	21	30	1.98
65186011--65186153	48	2.8	51	75	13	127	36	19	24	19	1.95
65186011--65186153	26	5.7	26	73	12	104	36	19	24	19	1.95
65195312--65195348	16	2.2	18	85	9	51	51	0	0	48	1.00
65195662--65195711	25	1.9	25	88	8	73	40	8	2	50	1.43
65198937--65198977	17	2.4	17	87	0	55	46	9	17	26	1.79
65198946--65198979	17	2.0	17	94	0	59	41	8	23	26	1.83
65199191--65199225	14	2.4	15	90	4	54	42	37	8	11	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65199846--65199897	21	2.5	21	78	6	61	26	1	7	63	1.32
65211523--65211717	104	1.9	104	89	2	302	28	16	8	46	1.77
65212484--65212975	227	2.2	227	86	2	675	33	17	19	29	1.95
65212883--65212972	44	2.0	44	80	4	101	28	18	22	30	1.97
65212592--65213238	271	2.4	271	82	6	785	33	17	21	28	1.96
65213131--65213270	44	3.2	44	77	12	146	32	17	24	25	1.96
65221930--65221982	19	2.5	21	82	14	65	49	0	3	47	1.19
65222320--65222384	20	3.3	20	77	16	73	60	0	3	36	1.13
65223374--65223417	22	2.0	21	82	4	52	40	11	0	47	1.39
65230727--65230777	9	5.8	9	90	4	86	23	9	29	37	1.87
65230724--65230777	17	3.1	17	94	2	90	22	11	27	38	1.88
65236639--65236688	9	5.4	9	90	4	73	36	32	10	22	1.87
65236638--65236704	19	3.6	17	80	11	62	40	28	10	20	1.86
65249318--65249497	89	2.0	90	85	9	244	49	3	2	44	1.33
65249461--65249494	15	2.1	17	89	10	54	50	5	2	41	1.42
65252438--65252462	12	2.1	12	100	0	50	24	36	24	16	1.94
65252621--65252687	9	7.4	9	88	6	100	38	28	10	22	1.87
65260046--65260089	22	2.0	21	82	4	52	47	0	11	40	1.39
65261465--65261522	9	5.9	10	80	9	57	43	5	0	51	1.24
65261471--65261522	19	2.5	20	82	17	63	46	3	0	50	1.20
65270120--65270263	44	3.3	42	76	12	123	26	23	18	31	1.97
65270326--65270803	44	10.7	44	68	14	194	28	21	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65270155--65270796	270	2.4	269	81	7	777	28	21	17	33	1.96
65270463--65270902	225	2.0	225	87	2	634	29	19	17	33	1.95
65286488--65286535	25	1.9	25	86	0	69	25	27	14	33	1.94
65286617--65286722	24	4.3	25	72	17	80	18	25	19	35	1.95
65286744--65286806	25	2.6	25	89	2	92	22	23	19	34	1.96
65286746--65286815	25	2.8	25	87	6	90	20	24	20	35	1.96
65298306--65298341	16	2.2	16	95	0	63	27	0	33	38	1.57
65300983--65301024	15	2.7	16	82	14	52	52	2	0	45	1.13
65300992--65301033	15	2.9	15	82	10	52	52	0	0	47	1.00
65301139--65301240	43	2.3	43	75	8	100	52	1	1	43	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222