genome.fa.s15.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  109  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34795572--34795649	29	2.7	28	80	11	95	25	12	30	30	1.93
34795635--34795871	116	2.0	116	95	0	420	29	13	23	32	1.94
34803663--34803740	29	2.7	28	80	11	95	25	12	30	30	1.93
34803726--34803962	116	2.0	116	95	0	420	29	13	23	32	1.94
34805909--34805945	19	2.0	18	89	5	56	67	0	27	5	1.12
34807780--34807818	20	1.9	21	89	5	62	25	28	12	33	1.93
34812988--34813165	27	6.6	27	84	3	205	29	28	14	26	1.95
34813009--34813164	82	1.9	81	88	3	233	29	28	14	26	1.95
34821032--34821073	17	2.5	17	92	0	66	11	4	9	73	1.22
34823100--34823159	22	2.7	23	73	19	63	66	6	0	26	1.16
34823109--34823142	4	8.0	4	90	9	50	73	2	0	23	0.97
34824496--34824548	23	2.4	22	76	20	56	9	18	1	69	1.25
34826897--34826956	22	2.7	23	73	19	63	66	6	0	26	1.16
34826906--34826939	4	8.0	4	90	9	50	73	2	0	23	0.97
34832055--34832113	24	2.5	24	81	13	68	67	1	28	1	1.10
34845528--34845895	47	8.1	47	87	7	544	32	8	30	28	1.88
34845586--34845654	35	2.0	35	100	0	138	30	5	31	31	1.81
34846014--34846092	37	2.1	37	86	4	106	26	18	29	25	1.98
34849869--34849919	24	2.1	24	92	0	84	11	27	17	43	1.84
34850204--34850237	17	2.0	17	88	11	52	52	5	0	41	1.25
34857444--34857491	16	3.2	15	88	8	64	14	12	22	50	1.77
34857551--34857578	14	2.0	14	100	0	56	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34858983--34859015	14	2.4	14	90	10	50	75	6	3	15	1.11
34859889--34859922	6	5.7	6	85	0	50	76	0	20	2	0.92
34859891--34859981	18	4.6	18	72	17	65	67	3	23	6	1.30
34859932--34860025	30	3.0	30	80	8	100	68	1	18	12	1.27
34859932--34859997	12	5.8	12	71	16	50	68	1	18	12	1.28
34859981--34860015	18	1.9	18	88	11	54	57	0	20	22	1.41
34860003--34860041	18	2.3	17	91	8	62	71	0	15	12	1.14
34861992--34862039	16	3.2	15	85	11	64	14	12	22	50	1.77
34861995--34862039	13	3.2	13	82	17	63	15	11	22	51	1.75
34864272--34864301	9	3.3	9	95	0	51	53	23	10	13	1.69
34868395--34868437	21	2.0	22	90	4	70	18	32	23	25	1.97
34868953--34869007	15	3.5	17	85	11	73	30	10	7	50	1.64
34871727--34871772	23	2.0	23	91	0	74	34	8	17	39	1.80
34872665--34872695	16	1.9	16	93	0	53	25	16	25	32	1.96
34872860--34872999	27	5.2	26	82	6	124	25	16	17	41	1.89
34872985--34873014	15	2.0	15	100	0	60	20	6	13	60	1.55
34874595--34874683	23	3.9	23	93	0	151	32	25	4	37	1.76
34881824--34881999	47	3.7	47	87	1	228	31	9	31	27	1.89
34882118--34882196	37	2.1	37	88	0	113	22	18	32	25	1.97
34883877--34883914	20	1.9	20	94	0	67	23	10	28	36	1.88
34889893--34889924	15	2.0	17	88	11	50	62	15	0	21	1.32
34893671--34893724	28	1.9	28	88	0	81	31	25	25	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34893668--34893731	28	2.3	27	78	7	74	31	23	25	20	1.98
34893840--34893892	26	2.0	26	85	0	70	32	18	28	20	1.97
34893942--34894139	32	6.2	32	77	6	134	36	21	19	22	1.95
34893962--34894139	32	5.6	32	78	6	157	35	22	19	22	1.96
34894359--34894406	20	2.4	20	89	0	69	25	31	16	27	1.97
34896062--34896284	27	8.3	27	88	0	338	23	21	21	33	1.97
34896247--34896326	42	1.9	42	92	0	133	25	22	27	25	2.00
34896290--34896365	27	2.8	27	81	0	89	21	25	19	34	1.96
34896197--34896376	96	1.9	96	86	0	261	23	23	21	31	1.99
34896166--34896392	123	1.8	123	86	0	328	23	23	22	31	1.99
34896356--34896493	27	5.1	27	85	3	172	23	17	15	42	1.88
34899645--34899672	3	9.3	3	100	0	56	35	0	0	64	0.94
34906338--34906365	14	2.0	14	100	0	56	42	0	14	42	1.45
34922037--34922088	25	2.1	25	96	0	95	32	15	21	30	1.94
34924834--34924878	23	2.0	23	95	0	81	37	28	4	28	1.77
34930457--34930839	40	9.6	40	91	2	520	24	20	27	26	1.99
34938498--34938872	40	9.6	40	87	6	457	24	20	28	26	1.99
34938498--34938872	78	4.8	80	85	6	457	24	20	28	26	1.99
34938498--34938872	116	3.2	119	85	7	482	24	20	28	26	1.99
34953246--34953516	40	6.8	40	92	2	445	23	28	21	26	1.99
34956789--34956813	13	1.9	13	100	0	50	24	8	20	48	1.76
34957452--34957503	17	3.0	18	77	8	63	71	3	5	19	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34958537--34958577	21	2.0	21	85	9	57	75	0	21	2	0.92
34958540--34958589	24	2.1	23	82	14	57	78	0	18	4	0.91
34960933--34960980	25	1.9	25	83	8	62	52	16	14	16	1.76
34962397--34962435	20	1.9	21	89	5	62	38	12	25	23	1.90
34963690--34963743	18	3.2	17	73	21	51	12	25	1	59	1.44
34963712--34963763	18	2.9	18	80	8	61	15	19	5	59	1.56
34963768--34963866	6	16.0	6	72	8	74	5	20	2	72	1.13
34964818--34964867	11	4.8	10	85	14	66	14	2	0	84	0.72
34964832--34964868	9	4.0	9	89	6	56	13	0	0	86	0.57
34965979--34966004	13	2.0	13	100	0	52	46	7	0	46	1.31
34969671--34969709	20	1.9	21	84	5	53	38	12	25	23	1.90
34971400--34971452	23	2.4	22	76	20	56	9	18	1	69	1.25
34981391--34981430	21	1.9	21	89	0	62	30	32	2	35	1.71
34983988--34984032	19	2.3	20	84	7	65	77	2	13	6	1.05
34988888--34988943	21	2.7	21	86	5	69	71	0	21	7	1.09
34988899--34988943	15	3.1	14	80	6	54	77	0	17	4	0.92
34990533--34990695	82	2.0	82	87	2	238	33	14	25	26	1.94
34991429--34991468	21	1.9	21	89	0	62	35	2	32	30	1.71
34992539--34992580	10	4.3	10	78	6	50	28	14	23	33	1.94
34997567--34997717	28	5.4	28	91	1	214	33	27	11	26	1.92
35001873--35001914	18	2.3	18	80	8	50	40	4	9	45	1.58
35008072--35008109	19	2.0	20	89	5	60	18	31	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35012037--35012085	19	2.5	20	80	9	57	73	4	18	4	1.15
35012063--35012109	25	1.9	24	83	12	60	68	2	23	6	1.24
35012091--35012131	22	1.9	21	90	5	64	73	2	17	7	1.17
35019555--35019594	18	2.2	18	86	4	53	12	27	0	60	1.33
35020655--35020712	13	4.5	13	87	6	66	17	3	3	75	1.07
35020655--35020697	11	3.7	11	85	11	59	13	2	4	79	1.00
35024551--35024612	10	5.9	10	76	10	61	35	33	1	29	1.67
35024551--35024613	21	3.0	21	88	2	81	34	34	1	28	1.67
35032141--35032176	13	2.6	15	83	16	51	72	2	19	5	1.17
35033134--35033168	18	1.9	18	94	0	61	54	0	22	22	1.45
35033140--35033178	18	2.2	18	85	0	51	61	0	23	15	1.33
35039283--35039353	35	2.0	35	97	0	133	21	36	12	29	1.90
35039420--35040056	326	2.0	326	82	3	789	21	20	16	41	1.91
35041150--35041187	19	2.0	19	100	0	76	21	21	21	36	1.95
35043535--35043574	18	2.2	18	86	4	53	12	27	0	60	1.33
35044635--35044686	13	4.0	13	87	7	70	23	13	0	63	1.29
35044635--35044681	14	3.4	14	88	5	69	19	10	0	70	1.16
35044725--35044766	11	3.7	12	84	12	61	11	4	9	73	1.22
35045469--35045506	19	2.0	19	100	0	76	21	21	21	36	1.95
35057155--35057196	17	2.5	17	100	0	84	14	9	4	71	1.28
35057236--35057279	13	3.5	13	96	3	81	13	0	6	79	0.92
35057236--35057279	12	3.6	12	93	6	79	13	0	6	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35058264--35058310	23	2.1	23	84	7	62	51	12	4	31	1.59
35063651--35063688	16	2.4	16	100	0	76	15	10	5	68	1.36
35063728--35063771	13	3.4	13	96	0	79	13	2	6	77	1.07
35064755--35064801	23	2.1	23	84	7	62	51	12	4	31	1.59
35068727--35068892	84	2.0	84	90	0	260	14	21	25	38	1.91
35078975--35079159	79	2.3	82	84	7	238	25	27	22	24	2.00
35078956--35079159	40	5.1	40	82	8	238	25	27	22	25	2.00
35084949--35085042	46	2.0	46	93	4	163	35	22	18	24	1.96
35087732--35087771	18	2.2	18	86	4	53	12	27	0	60	1.33
35088834--35088886	14	3.9	14	92	7	92	22	13	0	64	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222