genome.fa.s15.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  124  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40255440--40255507	29	2.3	30	82	10	86	38	0	0	61	0.96
40258523--40258768	50	4.8	50	83	3	267	28	21	28	21	1.99
40260639--40260701	30	2.1	30	96	0	117	23	3	15	57	1.53
40268889--40268948	26	2.3	26	79	2	75	21	25	18	35	1.96
40268897--40268947	26	1.9	27	88	4	77	25	21	17	35	1.95
40269062--40269115	28	1.9	28	88	0	81	27	18	22	31	1.97
40273853--40273879	9	3.0	9	100	0	54	11	11	44	33	1.75
40274669--40274856	27	7.0	26	82	9	198	38	19	20	21	1.93
40274669--40274829	81	2.0	81	90	7	256	38	18	21	21	1.93
40274662--40274841	54	3.3	53	85	6	229	40	20	19	20	1.92
40274682--40274856	81	2.2	82	86	6	241	40	17	21	21	1.92
40275007--40275108	26	3.9	26	81	2	98	17	22	21	38	1.93
40275221--40275286	28	2.4	28	82	5	80	22	27	21	28	1.99
40288518--40288643	39	3.3	39	93	1	209	29	9	11	49	1.71
40307710--40307767	24	2.4	24	80	5	73	31	27	22	18	1.97
40320360--40320426	33	2.0	33	97	0	125	23	4	22	49	1.68
40323778--40323893	27	4.3	27	75	8	83	39	14	23	22	1.91
40326270--40326301	16	2.0	16	93	0	55	40	25	9	25	1.85
40329106--40329143	19	2.0	19	89	0	58	34	23	7	34	1.84
40329708--40329770	30	2.1	31	82	8	76	39	1	42	15	1.57
40329815--40329849	18	1.9	18	88	0	52	25	11	14	48	1.77
40332873--40332991	48	2.5	48	94	0	211	62	1	22	13	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40338547--40340234	424	4.0	424	92	1	2717	34	11	18	35	1.87
40346609--40346676	20	3.5	18	80	6	64	11	25	20	42	1.86
40346596--40346673	40	2.0	39	82	7	95	10	24	20	44	1.82
40346623--40346676	19	2.8	20	78	13	58	11	25	20	42	1.85
40354324--40354402	37	2.1	37	90	0	122	25	31	18	24	1.98
40354521--40354998	47	10.1	47	92	0	668	28	30	9	31	1.89
40363041--40363177	43	3.2	42	82	5	148	30	20	18	30	1.96
40382688--40382720	15	2.2	16	89	10	52	3	18	0	78	0.87
40385103--40385135	16	2.1	16	94	0	57	36	3	36	24	1.71
40385368--40385402	18	2.0	17	88	5	52	54	0	0	45	0.99
40385486--40385522	16	2.2	17	86	13	51	54	0	2	43	1.14
40385444--40385629	59	3.1	59	70	11	198	49	3	3	43	1.36
40385396--40385583	61	3.1	61	70	11	206	48	6	3	42	1.44
40385606--40385642	16	2.2	17	86	13	51	54	0	0	45	1.00
40385355--40385643	120	2.4	120	98	0	560	48	4	2	44	1.35
40385619--40385665	24	1.9	24	87	12	69	55	0	2	42	1.12
40385663--40385817	75	2.0	77	91	3	251	46	2	2	48	1.29
40385708--40385940	91	2.5	91	87	7	339	47	3	2	46	1.34
40385770--40385815	18	2.7	18	86	6	60	50	2	2	45	1.26
40385734--40385940	44	4.6	46	67	21	134	47	3	2	45	1.36
40385757--40385901	44	3.2	44	70	19	145	48	2	2	46	1.31
40389931--40389989	23	2.5	24	75	8	68	54	20	10	15	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40389900--40390129	107	2.1	107	94	0	397	45	23	6	25	1.76
40390035--40390097	23	2.7	24	79	16	87	52	19	7	20	1.70
40390064--40390109	22	2.1	22	84	8	58	58	17	4	19	1.55
40398147--40398240	46	2.0	46	97	0	179	23	20	22	34	1.97
40398627--40398662	14	2.6	14	95	0	63	66	5	8	19	1.38
40402602--40402695	46	2.0	46	89	0	143	24	17	21	37	1.94
40407307--40407363	30	1.9	30	92	0	96	22	12	26	38	1.89
40411928--40411984	30	1.9	30	89	7	89	17	12	28	42	1.85
40421903--40421942	20	2.0	21	90	5	64	60	5	0	35	1.19
40424665--40424703	2	19.5	2	100	0	78	51	48	0	0	1.00
40425368--40425513	41	3.6	41	91	1	240	19	30	20	29	1.97
40425361--40425541	82	2.2	82	84	3	238	24	29	19	26	1.98
40429383--40429442	18	3.4	18	84	6	70	40	1	1	56	1.19
40429396--40429451	9	6.3	9	78	10	53	33	0	1	64	1.04
40431393--40431461	29	2.3	31	87	5	97	24	10	18	46	1.80
40432278--40432332	20	2.8	19	83	8	65	23	0	5	70	1.07
40433122--40433173	25	2.1	25	100	0	104	34	15	3	46	1.64
40437579--40437692	33	3.5	33	75	4	131	30	16	25	27	1.97
40437577--40437734	66	2.4	66	91	2	246	31	17	25	25	1.97
40437472--40437668	105	1.9	105	80	4	236	32	15	24	26	1.95
40440803--40440854	27	2.0	27	84	3	70	63	11	9	15	1.52
40441498--40441600	51	2.0	51	94	0	179	41	5	15	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40445060--40445177	40	3.0	39	75	4	121	33	20	22	22	1.97
40445236--40445364	41	3.2	39	81	6	105	18	20	24	35	1.95
40445295--40445432	41	3.4	41	79	7	118	18	23	25	31	1.98
40445984--40446021	15	2.5	15	86	0	58	21	0	42	36	1.53
40446356--40446392	16	2.4	16	90	4	58	78	0	0	21	0.75
40446386--40446440	28	2.0	28	85	7	76	47	5	7	40	1.54
40447689--40447716	10	2.8	10	100	0	56	42	0	14	42	1.45
40447783--40447834	27	1.9	27	92	0	86	42	0	11	46	1.40
40452825--40452989	66	2.5	65	84	3	197	40	16	27	15	1.89
40452966--40453036	21	3.4	21	88	0	70	33	12	43	9	1.76
40453374--40453585	87	2.5	86	84	1	237	25	17	26	30	1.98
40453374--40453583	43	4.9	42	81	4	231	25	18	26	30	1.98
40462028--40462075	16	2.9	16	75	3	51	54	6	6	33	1.51
40469129--40469161	16	2.0	17	88	5	50	60	18	9	12	1.57
40472381--40472418	14	2.7	14	92	8	60	36	2	18	42	1.64
40472402--40472441	20	2.1	19	95	4	71	30	7	15	47	1.72
40472388--40472451	34	1.9	32	84	12	85	34	6	15	43	1.72
40475336--40475384	6	8.2	6	88	0	53	42	0	57	0	0.99
40475340--40475386	19	2.6	18	83	6	58	40	0	59	0	0.97
40475336--40475393	25	2.4	25	85	2	73	41	0	58	0	0.98
40475353--40475393	6	6.5	6	91	8	64	34	0	65	0	0.93
40475362--40475401	18	2.2	18	86	8	55	35	0	65	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40477895--40478050	42	3.7	41	75	17	158	24	18	26	30	1.98
40481524--40481617	47	2.0	47	97	0	179	56	11	12	19	1.66
40487800--40487829	12	2.5	12	94	0	51	6	30	40	23	1.80
40490551--40490770	40	5.6	40	85	8	258	25	21	27	25	1.99
40490554--40490803	80	3.2	80	83	7	255	27	20	27	24	1.99
40498567--40498869	40	7.7	40	88	5	395	25	20	27	27	1.99
40505880--40505964	43	1.9	45	88	4	129	22	24	2	50	1.61
40506996--40507200	100	2.0	100	88	0	302	37	27	7	27	1.84
40510151--40510326	50	3.5	49	80	6	176	38	14	13	34	1.85
40511037--40511063	14	1.9	14	100	0	54	37	14	0	48	1.45
40516341--40516377	18	2.1	18	100	0	74	29	10	21	37	1.88
40519327--40519364	20	1.9	20	100	0	76	55	18	10	15	1.68
40523528--40523565	18	2.1	18	85	9	51	15	36	2	44	1.61
40526290--40526324	18	1.9	18	88	0	52	34	22	5	37	1.78
40528968--40529014	22	2.2	22	85	11	62	55	0	4	40	1.19
40533779--40533830	22	2.2	24	78	21	58	34	0	5	59	1.21
40533996--40534035	20	2.0	20	90	0	62	50	12	10	27	1.72
40533984--40534050	34	1.9	35	90	3	109	46	13	8	31	1.74
40534019--40534058	14	2.9	14	84	0	53	42	17	7	32	1.77
40535944--40536022	37	2.1	37	88	4	115	25	30	18	25	1.98
40536141--40536456	47	6.6	47	92	1	479	27	30	9	32	1.88
40543530--40543557	6	4.7	6	100	0	56	85	0	0	14	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40544146--40544237	19	4.8	19	94	0	157	38	16	10	34	1.84
40544123--40544237	38	2.9	38	89	5	158	39	16	9	34	1.81
40544787--40544910	45	2.8	45	87	2	169	24	25	22	28	2.00
40545424--40545523	44	2.3	44	91	3	157	28	25	22	25	1.99
40545537--40545782	88	2.8	86	88	3	384	20	26	27	26	1.99
40557348--40557381	12	2.8	12	81	0	50	44	0	38	17	1.49
40559901--40559954	20	2.7	20	82	0	63	24	20	18	37	1.94
40559901--40559974	30	2.5	30	86	8	98	21	20	18	39	1.93
40559901--40559965	20	3.2	20	71	16	53	23	21	16	38	1.93
40562369--40562418	18	2.8	18	87	0	64	76	6	14	4	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222