Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  203  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64389309--64389351
22
1.9
23
90
4
70
65
4
20
9
1.40
64389309--64389356
22
2.2
22
85
7
62
66
6
18
8
1.39
64390283--64390344
3
19.7
3
77
9
61
25
4
1
67
1.19
64390283--64390351
24
3.0
22
85
8
84
24
4
1
69
1.15
64390494--64390523
15
1.9
16
93
6
53
16
16
6
60
1.56
64392707--64392744
19
2.0
19
100
0
76
15
10
15
57
1.64
64399702--64399786
44
1.9
44
90
0
134
27
24
9
38
1.86
64399913--64399941
14
2.1
14
100
0
58
13
6
20
58
1.58
64402243--64402279
4
9.2
4
87
0
56
21
0
5
72
1.04
64402359--64402417
3
18.7
3
76
10
55
25
5
1
67
1.20
64417108--64418060
45
21.2
45
79
4
985
30
16
23
29
1.96
64417100--64418039
135
7.0
135
90
1
1350
30
16
23
29
1.96
64426688--64426772
44
1.9
44
90
0
134
27
24
9
38
1.86
64428728--64428757
14
2.1
14
93
0
51
66
0
0
33
0.92
64428807--64428852
20
2.3
20
85
3
58
50
0
0
50
1.00
64429019--64429057
18
2.1
19
85
4
53
53
0
2
43
1.14
64430047--64430076
15
2.1
14
93
6
51
76
0
0
23
0.78
64431575--64431612
16
2.4
16
100
0
76
18
26
31
23
1.97
64431622--64431728
41
2.6
41
85
2
144
35
20
16
27
1.94
64433457--64433503
22
2.2
22
85
11
62
65
10
14
8
1.45
64434339--64434376
4
9.5
4
94
0
67
23
0
2
73
0.95
64434449--64434506
3
18.7
3
75
7
53
27
5
1
65
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64439184--64439222
18
2.1
19
95
4
71
38
15
17
28
1.91
64441102--64441203
3
33.0
3
75
13
82
33
2
1
61
1.22
64444683--64444742
30
2.0
31
86
3
86
20
40
0
40
1.52
64453483--64453528
20
2.3
20
85
3
58
50
0
0
50
1.00
64454293--64454377
29
3.1
29
87
12
126
42
0
2
55
1.12
64454274--64454377
52
2.0
51
85
14
140
44
0
1
53
1.11
64454710--64454761
25
2.0
26
88
3
79
25
19
1
53
1.55
64457019--64457052
4
8.5
4
93
0
59
23
0
2
73
0.97
64457132--64457183
3
16.7
3
76
7
50
25
5
1
67
1.23
64461281--64461335
15
3.7
15
79
11
60
25
7
1
65
1.28
64463408--64463474
34
1.9
35
84
3
91
46
10
8
34
1.70
64464703--64464729
6
4.5
6
100
0
54
85
0
0
14
0.61
64471000--64471116
16
6.9
17
72
19
59
57
1
4
36
1.29
64471313--64471351
3
13.0
3
88
0
60
66
0
2
30
1.05
64471467--64471500
6
5.5
6
86
6
50
52
11
2
32
1.53
64471986--64472021
11
3.2
11
88
4
54
50
0
50
0
1.00
64472159--64472195
15
2.3
17
86
9
51
13
0
8
78
0.96
64472967--64473622
44
15.0
43
70
11
330
29
25
16
28
1.97
64472948--64473622
132
5.1
132
93
0
1073
29
25
16
28
1.97
64473735--64473928
95
2.0
95
94
2
336
28
21
19
30
1.97
64473964--64474158
97
2.0
95
94
2
336
29
23
18
28
1.98
64473630--64474293
231
2.9
229
93
1
1132
29
22
20
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64474166--64474359
46
4.3
46
67
12
150
31
23
19
26
1.98
64474061--64474470
134
3.1
133
94
2
705
30
22
19
27
1.98
64474418--64474767
86
4.1
86
92
0
547
26
24
22
26
2.00
64474493--64474713
42
5.2
42
60
20
98
24
23
25
27
2.00
64478884--64478927
19
2.3
20
84
7
56
40
11
20
27
1.86
64480986--64481091
37
2.8
38
77
16
105
50
0
13
34
1.47
64481460--64481576
16
6.9
17
72
19
59
57
1
4
36
1.29
64481774--64481809
3
12.0
3
93
0
63
63
0
2
33
1.08
64481925--64481958
6
5.5
6
86
6
50
52
11
2
32
1.53
64482442--64482477
11
3.2
11
88
4
54
50
0
50
0
1.00
64482584--64482621
16
2.3
17
86
4
51
13
0
7
78
0.94
64483973--64484017
23
2.0
23
82
8
56
33
4
11
51
1.58
64484589--64484802
42
5.1
42
85
4
258
29
19
23
27
1.98
64486628--64486668
13
3.0
14
79
13
50
82
7
2
7
0.91
64486621--64486682
33
2.0
30
87
9
88
80
8
3
8
1.00
64489055--64489176
44
2.8
44
77
3
120
28
15
27
28
1.96
64489259--64489296
18
2.1
18
100
0
76
34
26
10
28
1.90
64489144--64489594
149
2.9
157
81
7
526
32
20
22
24
1.98
64489431--64489498
34
2.0
34
97
0
127
30
11
30
26
1.92
64489302--64489629
165
2.0
165
93
0
557
32
17
24
25
1.97
64489465--64489816
131
2.7
131
95
1
609
29
20
24
25
1.99
64489471--64489786
44
7.2
44
64
14
125
30
19
24
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64489826--64490061
49
4.8
50
73
3
219
34
20
19
26
1.96
64489826--64490084
97
2.6
98
86
2
349
35
20
18
26
1.95
64490244--64490374
48
2.9
47
82
11
123
24
19
25
31
1.98
64490270--64490362
48
1.9
48
100
0
186
22
20
23
33
1.97
64490080--64490872
44
18.1
44
68
12
276
28
19
23
28
1.98
64490106--64490512
129
3.1
128
68
11
311
28
19
22
28
1.98
64490322--64490886
218
2.6
218
91
0
905
27
20
23
28
1.99
64490910--64491048
50
2.8
50
76
0
143
31
22
20
25
1.98
64498493--64498552
26
2.3
25
77
8
66
45
3
0
51
1.17
64498993--64499031
15
2.5
15
87
8
51
64
0
0
35
0.94
64503384--64503413
12
2.5
12
94
0
51
53
0
10
36
1.35
64506527--64506602
23
3.3
23
90
0
125
21
21
27
30
1.98
64513901--64513976
23
3.3
23
90
0
125
21
21
27
30
1.98
64517898--64517997
24
4.1
24
85
3
130
18
27
21
34
1.96
64517829--64517997
48
3.5
49
76
14
136
16
26
21
35
1.94
64519263--64519309
19
2.5
19
100
0
94
44
4
8
42
1.54
64523852--64524052
35
5.8
35
85
2
271
19
21
18
39
1.92
64523857--64524052
69
2.8
69
94
0
329
19
22
18
38
1.93
64528932--64529237
111
2.8
110
89
4
444
33
20
16
29
1.94
64531748--64531792
20
2.1
22
84
12
58
13
11
8
66
1.44
64536689--64536800
24
4.7
24
87
2
145
21
28
16
33
1.95
64551226--64551264
20
2.0
19
85
5
51
15
2
10
71
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64552527--64552584
10
5.5
11
78
10
68
22
1
3
72
1.09
64552527--64552589
21
3.0
20
88
9
83
23
1
6
68
1.22
64566379--64566431
25
2.1
25
82
0
61
77
13
3
5
1.09
64573063--64573120
30
1.9
30
89
0
89
41
3
24
31
1.71
64573332--64573363
13
2.5
13
94
0
55
31
0
12
56
1.37
64573458--64573699
50
4.7
50
84
4
279
26
24
28
20
1.99
64573458--64573707
100
2.4
104
87
6
357
26
24
28
21
1.99
64575598--64575632
17
2.1
17
89
10
54
77
0
22
0
0.78
64575598--64575631
13
2.6
14
90
9
54
79
0
20
0
0.73
64579389--64579424
19
1.9
18
88
5
54
22
8
2
66
1.31
64579439--64579490
22
2.3
22
78
15
61
21
9
7
61
1.51
64580614--64580655
19
2.2
19
91
0
66
35
9
33
21
1.86
64580621--64580658
19
2.0
19
100
0
76
36
5
36
21
1.76
64590672--64590708
15
2.6
14
91
4
56
18
0
16
64
1.29
64593620--64593674
3
18.7
3
84
3
76
34
1
0
63
1.05
64594981--64595014
16
2.1
16
88
0
50
20
14
20
44
1.87
64598554--64598695
17
8.4
17
78
5
135
47
10
11
30
1.74
64598465--64598592
35
3.4
37
73
17
120
42
12
9
35
1.75
64598555--64598693
34
4.1
34
80
7
158
47
10
12
29
1.75
64598554--64598694
51
2.8
50
84
10
155
46
10
12
30
1.75
64598891--64598937
20
2.5
19
77
16
53
44
8
17
29
1.78
64599298--64599362
10
6.7
10
84
7
53
0
16
0
83
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64599309--64599365
14
3.8
14
82
13
69
0
12
0
87
0.54
64599299--64599355
7
7.4
8
84
11
59
0
14
0
85
0.59
64599310--64599343
1
34.0
1
93
0
59
0
2
0
97
0.19
64599645--64599703
3
18.0
3
86
13
73
0
33
0
66
0.92
64599635--64599702
16
4.1
16
87
7
91
0
29
0
70
0.87
64599635--64599699
34
1.9
33
87
3
94
0
29
0
70
0.87
64599645--64599700
13
4.5
13
80
17
64
0
33
0
66
0.92
64600055--64600171
30
3.9
30
83
3
139
43
3
23
29
1.70
64600055--64600171
60
2.0
59
84
5
155
43
3
23
29
1.70
64600167--64600200
14
2.4
15
90
9
54
26
0
2
70
1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222