genome.fa.s15.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  214  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67570312--67570374	29	2.1	29	88	2	90	42	34	3	19	1.67
67581976--67582060	44	1.9	44	83	4	109	30	17	22	29	1.97
67582099--67582528	44	9.3	44	69	16	221	33	18	20	27	1.96
67582152--67582644	98	5.1	97	72	10	334	33	18	20	27	1.96
67582480--67582642	54	3.2	54	64	19	132	33	18	20	26	1.96
67582113--67582572	142	3.2	142	93	0	758	33	19	20	27	1.96
67583013--67583074	29	2.1	29	84	3	79	45	32	1	20	1.61
67583028--67583090	29	2.1	30	88	2	92	42	33	3	20	1.68
67586203--67586235	15	2.2	15	94	0	57	72	0	0	27	0.85
67586226--67586263	7	5.6	7	90	3	60	57	2	0	39	1.12
67586225--67586272	21	2.3	21	82	3	62	58	4	0	37	1.18
67586225--67586272	14	3.5	14	85	2	62	58	4	0	37	1.18
67594781--67594893	51	2.2	51	95	0	199	34	15	22	28	1.94
67594905--67595042	48	2.9	48	80	10	156	24	12	28	34	1.92
67600733--67600868	68	2.0	68	92	0	227	33	16	14	35	1.89
67602781--67602832	27	2.0	25	82	14	61	32	3	11	51	1.56
67616083--67616150	34	2.0	34	100	0	136	41	5	8	44	1.60
67637899--67637960	26	2.3	28	81	10	76	48	0	1	50	1.10
67639615--67639674	29	2.0	32	83	9	81	16	26	8	48	1.75
67640716--67640768	19	2.8	19	81	13	65	73	0	5	20	1.03
67650579--67650606	12	2.3	12	100	0	56	57	0	0	42	0.99
67651497--67651581	44	1.9	44	85	7	118	36	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67658382--67658469	42	2.1	43	97	2	169	14	21	13	50	1.78
67658551--67658598	20	2.4	21	76	13	57	54	0	0	45	0.99
67661907--67661948	18	2.5	18	81	11	54	33	0	4	61	1.17
67666056--67666110	9	6.2	9	95	2	85	41	25	10	21	1.86
67666805--67666843	13	2.9	14	80	7	53	35	0	0	64	0.94
67668536--67668569	17	2.1	17	88	5	52	38	0	0	61	0.96
67669398--67669435	9	4.2	9	93	0	67	63	2	0	34	1.09
67669748--67669786	17	2.3	17	100	0	78	35	20	5	38	1.75
67670078--67670143	29	2.2	30	79	10	73	59	4	3	33	1.33
67674158--67674200	22	1.9	23	90	4	70	20	11	13	53	1.71
67675020--67675244	114	2.0	114	93	1	389	44	8	11	36	1.70
67680785--67680865	25	3.3	25	80	1	92	37	19	23	19	1.95
67680955--67681013	26	2.3	25	82	2	73	37	23	22	16	1.94
67680875--67681027	25	6.2	25	69	15	95	30	23	26	19	1.98
67685478--67685535	28	2.0	28	83	6	71	48	5	1	44	1.35
67685876--67685914	2	19.5	2	84	10	53	46	2	0	51	1.14
67686522--67686546	13	1.9	13	100	0	50	28	0	0	72	0.86
67687458--67687586	37	3.5	37	97	0	249	25	19	17	37	1.94
67687441--67687586	74	2.0	72	94	2	256	24	21	16	36	1.94
67687567--67687766	52	3.9	52	84	8	277	28	22	15	34	1.94
67687600--67687772	46	3.7	46	84	9	231	28	22	14	34	1.93
67687549--67687772	98	2.3	98	90	0	349	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67690500--67690524	9	2.8	9	100	0	50	36	8	0	56	1.29
67691004--67691073	31	2.3	30	76	16	72	32	12	12	41	1.82
67692210--67692234	13	1.9	13	100	0	50	40	0	8	52	1.31
67697689--67697725	17	2.2	17	100	0	74	37	16	0	45	1.47
67701809--67701848	21	1.9	21	84	0	53	22	57	15	5	1.57
67713734--67713796	27	2.3	28	83	2	74	23	6	17	52	1.67
67714424--67714450	6	4.5	6	100	0	54	29	33	18	18	1.95
67719324--67719383	31	2.0	31	83	3	77	38	8	11	41	1.72
67721669--67721717	23	2.0	24	88	7	73	42	0	0	57	0.99
67727150--67727195	17	2.5	20	79	17	62	56	0	0	43	0.99
67733941--67734005	31	2.1	31	88	0	94	35	6	18	40	1.76
67738741--67738793	25	2.1	25	83	13	65	41	1	0	56	1.10
67738748--67738793	22	2.0	25	83	12	62	39	2	0	58	1.10
67752745--67752780	8	4.5	8	96	0	63	69	11	0	19	1.18
67754902--67755665	86	8.9	86	92	1	1223	29	21	23	25	1.99
67754902--67755665	255	3.0	257	90	1	1221	29	21	23	25	1.99
67755681--67756248	44	12.8	44	69	13	238	31	19	21	27	1.98
67755766--67756284	87	5.8	88	71	12	306	30	20	22	27	1.98
67756083--67756198	46	2.6	44	82	5	126	30	20	19	29	1.97
67757942--67757990	18	2.8	18	79	14	66	34	8	0	57	1.29
67760320--67760359	9	4.4	9	93	0	71	27	10	20	42	1.83
67762435--67762545	38	2.9	37	85	5	141	31	12	19	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67762624--67762772	44	3.4	42	84	4	154	24	17	18	38	1.92
67763899--67763931	11	3.0	11	87	12	50	72	0	0	27	0.85
67763899--67763936	19	1.9	19	89	5	58	73	0	0	26	0.83
67768394--67768452	21	2.8	20	80	14	57	54	3	1	40	1.27
67768434--67768532	12	9.4	11	69	25	54	58	0	3	38	1.14
67768444--67768478	18	2.0	18	94	5	63	57	0	2	40	1.14
67768434--67768490	12	5.3	12	76	23	65	56	0	5	38	1.22
67768419--67768497	29	2.6	29	92	8	122	56	0	3	39	1.17
67768412--67768521	30	3.5	31	82	10	127	59	0	2	38	1.12
67768469--67768551	42	2.0	42	92	4	141	60	0	1	38	1.05
67768516--67768562	17	2.8	17	83	0	58	61	0	0	38	0.96
67771832--67772004	88	2.0	87	85	3	231	29	10	21	38	1.88
67783326--67783482	53	3.0	52	86	8	219	44	14	3	37	1.63
67789651--67789705	15	3.9	15	79	13	71	25	32	14	27	1.95
67790807--67790857	20	2.5	21	83	3	68	35	0	0	64	0.94
67795944--67795981	15	2.5	16	79	12	53	44	15	31	7	1.75
67796003--67796042	21	1.9	21	84	0	53	30	22	32	15	1.94
67796327--67796413	29	3.0	29	77	1	93	20	29	21	27	1.98
67806650--67806802	70	2.2	70	81	2	171	42	9	19	28	1.83
67810258--67810296	20	2.0	20	94	0	69	51	0	0	48	1.00
67820296--67820404	41	2.6	41	86	1	146	25	21	27	25	1.99
67824067--67824106	9	4.4	9	83	0	53	47	20	7	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67829660--67829705	21	2.1	22	88	4	67	8	10	10	69	1.37
67832587--67832819	37	5.7	45	87	8	203	26	21	15	36	1.93
67832672--67832848	37	4.8	37	96	0	309	26	22	13	37	1.91
67834753--67834790	20	1.9	20	88	0	58	34	18	18	28	1.95
67840994--67841033	12	3.2	12	80	13	53	35	0	0	65	0.93
67840994--67841060	24	2.7	25	80	15	77	35	0	0	64	0.94
67853180--67853235	9	6.8	8	74	13	51	62	1	1	33	1.16
67853180--67853224	17	2.7	17	82	3	56	64	2	0	33	1.06
67853176--67853224	25	2.0	24	92	4	80	59	2	0	38	1.09
67853786--67853827	18	2.3	19	87	4	59	33	14	11	40	1.82
67855497--67855568	16	4.9	16	69	27	52	47	0	1	51	1.09
67855498--67855568	28	2.4	29	78	19	85	47	0	1	50	1.09
67855533--67855573	8	5.0	8	88	5	64	41	0	0	58	0.98
67864613--67864659	22	2.1	22	85	14	62	44	4	4	46	1.42
67864645--67864687	23	2.0	23	81	9	54	65	2	0	32	1.06
67864929--67864981	21	2.5	21	93	0	88	30	39	9	20	1.84
67868156--67868233	31	2.6	29	80	9	93	60	7	7	24	1.51
67878841--67879055	110	2.0	106	85	8	292	27	12	14	45	1.80
67883460--67883509	23	2.2	23	82	7	57	48	0	6	46	1.27
67890503--67890576	3	24.3	3	70	8	51	29	6	4	59	1.42
67904820--67904852	18	1.9	17	88	11	50	42	18	6	33	1.75
67906016--67906081	28	2.4	28	92	2	107	39	10	1	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67906028--67906084	28	2.0	28	100	0	114	38	7	0	54	1.28
67906292--67906361	4	17.5	4	75	21	67	72	0	27	0	0.84
67906286--67906368	10	8.3	10	77	15	73	71	0	28	0	0.87
67906292--67906368	14	5.2	14	77	14	75	71	0	28	0	0.86
67907225--67907367	27	5.6	25	73	16	125	41	7	2	47	1.46
67907223--67907366	50	2.9	50	83	3	200	42	7	2	47	1.46
67907243--67907337	22	4.0	22	74	12	64	40	7	3	49	1.47
67907367--67907399	17	1.9	17	88	11	50	84	6	3	6	0.84
67911924--67911996	23	3.2	23	88	0	119	30	23	21	24	1.99
67912230--67912268	18	2.2	17	86	13	53	46	20	0	33	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222