genome.fa.s15.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  97  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30560787--30560901	57	2.0	56	84	1	149	40	14	24	20	1.90
30563093--30563137	20	2.2	21	84	4	56	68	8	0	22	1.16
30574118--30574475	47	7.6	47	92	1	572	33	8	29	28	1.86
30578035--30578110	30	2.5	30	93	0	125	21	32	27	18	1.96
30580495--30580549	22	2.4	23	87	6	76	38	1	1	58	1.20
30585504--30585736	41	5.6	40	79	8	268	35	24	18	21	1.95
30585503--30585739	84	2.8	84	92	0	411	35	24	17	21	1.95
30588173--30588245	27	2.7	27	82	0	92	36	20	20	21	1.95
30591368--30591876	206	2.5	205	85	3	695	32	11	15	40	1.84
30591896--30591938	11	3.9	11	84	0	59	48	9	6	34	1.62
30604299--30604343	20	2.1	23	88	12	69	22	4	2	71	1.15
30610406--30610480	38	2.0	38	89	0	114	34	16	10	38	1.83
30610945--30611106	86	1.9	86	83	7	213	37	18	16	28	1.92
30612505--30612630	26	4.8	26	78	3	121	29	34	13	22	1.92
30614750--30614780	16	2.0	16	93	6	55	41	19	12	25	1.87
30617169--30617240	24	3.0	24	85	6	92	36	20	26	16	1.94
30617201--30617250	24	2.1	24	88	0	73	40	22	26	12	1.88
30617282--30617347	26	2.5	26	83	7	80	36	24	24	15	1.93
30622384--30622566	41	4.5	41	87	2	156	21	27	20	30	1.98
30622419--30622580	41	4.0	41	90	1	236	22	27	20	29	1.99
30631708--30631741	15	2.3	15	100	0	68	58	5	0	35	1.22
30632959--30633006	24	2.0	24	83	4	60	79	4	16	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30639960--30639996	9	4.1	9	92	0	65	32	10	21	35	1.88
30640056--30640092	9	4.1	9	92	0	65	45	13	10	29	1.77
30640141--30640201	30	2.0	31	87	3	88	19	45	0	34	1.51
30640462--30640501	20	1.9	21	85	10	55	22	22	0	55	1.44
30641116--30641141	5	5.2	5	100	0	52	19	19	19	42	1.90
30641714--30641743	15	2.0	15	100	0	60	6	26	26	40	1.81
30649482--30649529	24	2.0	24	87	0	69	47	8	6	37	1.59
30649487--30649538	24	2.2	24	82	0	59	50	7	5	36	1.55
30653658--30653697	20	2.0	20	90	0	62	30	10	10	50	1.69
30653643--30653709	34	1.9	35	87	3	100	32	8	11	46	1.72
30654233--30654454	111	2.0	111	98	0	426	39	15	10	33	1.83
30667026--30667127	42	2.4	42	81	0	114	17	24	18	39	1.92
30678291--30678325	18	1.9	18	88	0	52	25	28	0	45	1.54
30679807--30679847	21	1.9	22	85	5	57	46	9	2	41	1.50
30682027--30682076	24	2.1	24	88	0	73	52	6	4	38	1.45
30682624--30682686	31	2.0	31	96	0	117	28	14	28	28	1.95
30686978--30687161	40	4.6	40	83	6	205	24	21	27	27	1.99
30694725--30694908	40	4.6	40	83	6	205	24	21	27	27	1.99
30699015--30699060	25	1.9	23	82	8	56	17	19	2	60	1.46
30702125--30702234	34	3.2	34	67	5	105	26	10	29	33	1.90
30702118--30702249	68	1.9	68	90	3	212	25	11	28	34	1.90
30702346--30702453	34	3.2	34	77	2	110	23	9	25	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30702355--30702456	17	6.0	17	75	0	60	24	9	22	43	1.83
30702350--30702450	51	2.0	51	86	0	139	23	8	22	44	1.81
30706097--30706322	50	4.5	50	79	3	233	20	29	21	29	1.98
30706289--30706354	32	2.1	32	94	0	114	27	28	18	25	1.98
30712040--30712091	25	2.1	24	96	3	95	38	9	11	40	1.74
30712045--30712098	25	2.2	25	86	6	74	35	12	12	38	1.82
30712827--30713123	50	5.8	50	77	4	247	22	28	20	28	1.98
30728198--30728222	12	2.1	12	100	0	50	76	8	0	16	1.02
30739949--30739978	15	1.9	16	93	6	53	33	3	0	63	1.11
30740022--30740268	131	1.9	134	87	7	371	36	5	4	53	1.43
30740202--30740235	12	2.7	13	90	4	52	35	0	0	64	0.94
30740203--30740240	13	3.0	13	88	3	51	39	0	2	57	1.12
30744024--30744076	26	2.0	26	100	0	106	45	0	16	37	1.48
30744474--30744626	21	7.3	21	70	2	92	15	20	17	46	1.84
30744474--30744596	42	2.9	42	85	0	147	16	21	16	45	1.85
30746338--30746465	56	2.4	53	82	10	138	27	19	28	24	1.98
30746803--30746842	17	2.4	17	91	0	71	42	22	7	27	1.80
30748477--30748610	50	2.6	51	82	6	175	29	23	16	30	1.96
30748541--30748678	68	2.0	68	94	0	240	28	26	15	29	1.96
30753085--30753334	40	6.3	40	93	0	385	24	20	28	26	1.99
30753032--30753334	80	3.8	80	89	2	396	24	20	28	26	1.99
30753032--30753334	120	2.5	119	86	2	392	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30759103--30759171	33	2.1	33	100	0	138	18	17	24	39	1.92
30759164--30759360	49	3.8	50	83	5	198	21	27	22	28	1.99
30768103--30768143	19	2.2	19	100	0	82	36	4	14	43	1.67
30769097--30769222	46	2.7	47	79	10	150	42	7	3	46	1.49
30769097--30769221	45	2.7	45	81	6	160	42	8	3	46	1.49
30773423--30773447	13	1.9	13	100	0	50	12	24	32	32	1.91
30774990--30775028	16	2.4	16	100	0	78	46	0	12	41	1.42
30775149--30775182	18	1.9	18	88	5	52	47	0	0	52	1.00
30775306--30775360	21	2.7	20	77	5	56	9	10	16	63	1.51
30788462--30788581	36	3.3	36	75	8	109	43	28	11	16	1.83
30790022--30790053	3	10.7	3	100	0	64	68	31	0	0	0.90
30803490--30803548	30	2.0	30	93	0	100	35	23	16	23	1.95
30805316--30805423	40	2.7	39	86	10	141	32	0	0	66	0.98
30805378--30805406	11	2.5	12	94	5	51	41	0	0	58	0.98
30805399--30805437	9	4.3	9	83	9	53	25	0	2	71	0.98
30805399--30805432	17	2.0	17	94	0	59	20	0	2	76	0.92
30807000--30807096	50	1.9	53	83	8	130	56	6	7	29	1.51
30817756--30817798	18	2.4	18	92	0	68	25	9	25	39	1.85
30823603--30823650	22	2.3	21	85	7	62	27	4	8	60	1.44
30825422--30825451	14	2.1	14	93	0	51	40	0	43	16	1.48
30832694--30832919	111	2.0	111	96	0	416	22	25	18	34	1.96
30841135--30841402	137	2.0	137	87	1	394	30	26	22	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30844485--30844565	41	2.0	41	95	0	144	14	23	19	41	1.89
30844643--30844676	4	9.0	4	87	12	54	47	0	0	52	1.00
30844824--30844849	4	6.5	4	100	0	52	46	0	0	53	1.00
30853027--30853214	40	4.7	40	94	0	304	22	25	20	31	1.98
30862613--30862638	9	2.9	9	100	0	52	34	19	0	46	1.50
30866062--30866119	25	2.3	25	96	0	107	44	13	12	29	1.80
30866986--30867025	17	2.3	18	87	12	66	42	10	0	47	1.37
30871557--30871666	32	3.5	32	81	6	118	25	10	16	48	1.77
30871598--30871666	29	2.2	32	82	10	81	24	11	17	46	1.81
30872919--30872961	18	2.6	16	72	13	50	62	4	16	16	1.48
30874022--30874052	12	2.5	13	89	10	55	67	0	19	12	1.22
30875548--30875662	23	4.9	23	77	6	106	39	22	11	26	1.88
30876620--30876746	43	3.0	42	74	13	132	33	26	18	22	1.96
30878129--30878175	23	2.0	23	84	8	60	44	10	4	40	1.59
30891000--30891143	15	9.7	15	70	15	59	24	20	27	28	1.99
30891379--30891433	23	2.5	21	77	11	56	34	20	16	29	1.94
30891389--30891432	23	1.9	23	85	0	61	38	20	13	27	1.90
30892796--30892841	21	2.2	21	96	0	83	50	4	17	28	1.65
30898569--30898609	20	2.0	20	90	0	64	34	24	14	26	1.94
30900481--30900649	50	3.4	50	82	8	193	29	23	26	20	1.99
30900919--30900957	12	3.2	12	85	0	51	51	5	23	20	1.67
30900920--30900963	20	2.2	20	87	0	61	52	4	25	18	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30902351--30902544	50	3.9	49	81	2	208	28	23	26	21	1.99
30915949--30915991	5	8.0	5	80	14	50	18	4	0	76	0.95
30915945--30915979	17	2.0	18	88	5	54	22	0	0	77	0.78
30915949--30915991	11	4.0	10	80	16	50	18	4	0	76	0.95
30916489--30916526	18	2.1	18	95	0	67	31	23	5	39	1.77
30925352--30925482	46	2.8	46	89	0	208	43	17	17	21	1.88
30926652--30927039	41	9.5	41	83	1	481	21	18	27	31	1.97
30926652--30927039	163	2.4	165	85	0	528	21	18	27	31	1.97
30926653--30927109	163	2.8	163	82	2	477	22	19	26	31	1.98
30927342--30927389	22	2.2	21	81	3	60	22	0	29	47	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222