genome.fa.s15.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  156  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50216176--50216277	50	2.0	50	88	3	152	35	18	12	33	1.89
50220103--50220339	41	5.8	41	80	2	145	23	26	14	35	1.93
50223856--50223919	33	1.9	33	100	0	128	34	12	21	31	1.91
50227188--50227216	12	2.3	13	94	5	51	65	6	6	20	1.40
50231985--50232183	99	2.0	99	95	0	353	30	13	18	38	1.89
50246405--50246458	19	2.7	22	72	21	64	50	0	1	48	1.11
50248126--50248178	24	2.2	24	89	0	79	33	1	9	54	1.43
50256995--50257030	15	2.5	15	86	4	56	33	0	5	61	1.19
50261647--50261710	33	1.9	34	84	9	87	51	1	9	37	1.44
50261722--50261775	21	2.5	22	84	6	65	48	0	9	42	1.35
50262174--50262217	3	15.0	3	90	4	72	63	0	2	34	1.07
50263979--50264433	45	10.1	45	85	0	622	31	21	16	31	1.95
50276209--50276272	33	1.9	34	84	9	87	51	1	9	37	1.44
50276284--50276333	21	2.3	22	82	6	57	50	4	8	38	1.51
50276667--50276713	20	2.2	21	85	11	69	51	6	6	36	1.53
50276725--50276800	3	24.3	3	76	12	73	61	2	3	31	1.28
50276725--50276775	25	2.0	25	88	7	77	66	0	1	31	1.03
50276725--50276803	11	7.2	11	72	24	69	62	2	3	31	1.27
50286857--50286979	44	2.8	45	80	9	144	29	18	23	28	1.98
50286687--50287112	181	2.4	182	82	5	508	31	17	21	29	1.96
50286922--50287180	129	1.9	136	83	6	334	33	16	20	28	1.95
50288754--50288957	24	8.5	24	68	14	82	34	4	4	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50290095--50290140	23	1.9	25	86	8	69	21	13	8	56	1.63
50293056--50293089	15	2.2	16	89	5	52	52	17	5	23	1.66
50295359--50295559	101	2.0	101	95	0	357	46	11	17	23	1.82
50295375--50295580	101	2.0	99	88	2	268	47	11	16	24	1.79
50304001--50304181	40	4.5	39	82	5	186	25	23	27	23	2.00
50304001--50304181	79	2.3	81	81	7	210	25	23	27	23	2.00
50304054--50304218	79	2.1	79	80	6	183	27	21	26	24	1.99
50318434--50318485	20	2.6	20	93	0	86	46	11	7	34	1.69
50320693--50320726	16	2.1	16	94	0	59	35	35	2	26	1.72
50325624--50325686	15	3.9	17	75	19	55	19	7	0	73	1.08
50325625--50325671	23	2.1	21	88	7	67	19	6	0	74	1.03
50328733--50328925	80	2.4	80	82	5	221	26	29	20	23	1.99
50328703--50328872	40	4.3	40	90	0	234	25	28	21	24	1.99
50328703--50328925	120	1.9	119	81	6	272	26	28	21	24	1.99
50328857--50328934	40	1.9	41	82	10	97	26	28	21	23	1.99
50336543--50336720	27	6.6	27	85	3	214	26	14	28	30	1.95
50336544--50336699	82	1.9	81	89	3	242	26	14	28	30	1.95
50336540--50336720	82	2.2	81	84	2	238	27	14	27	30	1.95
50340731--50340773	19	2.2	20	80	12	54	27	16	25	30	1.97
50340768--50340905	59	2.3	60	81	7	147	26	18	27	27	1.98
50343379--50343469	43	2.1	45	93	4	159	26	12	17	43	1.84
50355807--50355975	40	4.3	40	90	1	225	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50355805--50356027	40	5.7	40	85	4	222	26	28	20	24	1.99
50355960--50356036	40	1.9	41	84	7	104	27	28	20	23	1.99
50382273--50382344	35	2.1	35	94	0	126	20	20	13	44	1.86
50384970--50385121	27	5.6	27	89	2	223	29	28	15	26	1.96
50384970--50385121	55	2.8	54	87	2	223	29	28	15	26	1.96
50384970--50385122	82	1.9	82	91	0	252	29	28	15	26	1.96
50387690--50387726	19	1.9	19	89	10	58	29	0	0	70	0.88
50387692--50387743	14	3.9	13	78	16	54	26	3	0	69	1.06
50387695--50387728	15	2.4	14	90	9	52	26	0	0	73	0.83
50387691--50387744	26	2.0	27	86	10	76	25	3	0	70	1.04
50398640--50398680	20	2.1	20	86	4	57	41	4	4	48	1.46
50406347--50406528	27	6.7	27	90	2	256	41	22	17	19	1.90
50406347--50406528	55	3.3	54	87	5	267	41	22	17	19	1.90
50406347--50406528	82	2.2	82	92	3	296	41	22	17	19	1.90
50418157--50418189	17	2.0	16	94	5	57	15	0	0	84	0.61
50423985--50424024	19	2.1	19	86	9	55	42	5	5	47	1.47
50431691--50431885	27	7.1	27	90	2	273	42	21	16	19	1.90
50431691--50431885	55	3.6	54	86	5	284	42	21	16	19	1.90
50431691--50431885	82	2.4	82	92	3	313	42	21	16	19	1.90
50434760--50434833	11	7.3	10	76	14	55	22	1	2	72	1.04
50434766--50434821	19	2.8	20	83	8	69	23	1	0	75	0.90
50442700--50442731	12	2.6	13	85	14	50	37	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50457577--50457614	9	4.2	9	100	0	76	31	13	21	34	1.91
50462985--50463030	24	1.9	24	86	0	65	39	10	32	17	1.84
50469198--50469236	14	2.7	15	88	7	55	58	10	12	17	1.61
50472982--50473031	26	1.9	26	87	0	73	42	22	16	20	1.89
50477633--50477663	13	2.4	13	100	0	62	19	38	16	25	1.92
50488375--50488447	26	2.8	26	81	4	76	39	23	16	20	1.92
50490563--50490822	137	1.9	138	83	2	344	30	24	22	22	1.99
50497029--50497077	20	2.5	20	81	15	66	12	24	6	57	1.58
50497287--50497520	50	4.6	50	79	4	211	23	27	21	27	1.99
50499805--50499868	26	2.5	26	86	0	92	29	20	25	25	1.99
50504884--50504930	24	2.0	24	86	0	67	14	12	23	48	1.78
50505071--50505401	32	10.4	32	86	4	436	18	20	21	40	1.92
50514785--50514824	12	3.4	12	89	3	64	37	0	37	25	1.56
50522799--50522830	16	1.9	17	93	6	57	34	0	21	43	1.53
50524854--50525046	50	3.7	50	82	6	217	26	21	27	23	1.99
50538503--50538690	51	3.7	50	84	3	243	25	16	27	30	1.97
50542778--50542822	19	2.3	20	88	7	67	44	6	22	26	1.77
50555448--50555710	40	6.6	40	88	3	325	26	27	20	24	1.99
50563393--50563655	40	6.6	40	88	3	325	26	27	20	24	1.99
50568814--50568873	28	2.1	28	100	0	120	33	35	10	21	1.87
50570506--50570545	17	2.4	17	86	0	53	62	2	12	22	1.42
50570697--50570724	5	5.6	5	100	0	56	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50581054--50581521	106	4.4	106	86	2	652	33	17	15	33	1.91
50582244--50582274	15	2.1	15	100	0	62	41	32	0	25	1.56
50585225--50585717	47	10.4	47	92	2	799	32	8	29	29	1.86
50585229--50585717	143	3.4	143	96	0	874	32	8	29	29	1.86
50585225--50585717	190	2.6	188	92	2	817	32	8	29	29	1.86
50585839--50585914	37	2.1	37	87	0	107	23	19	30	26	1.98
50587129--50587400	40	6.8	40	91	0	427	24	22	27	25	1.99
50591181--50591626	47	9.4	47	93	1	721	32	8	30	28	1.86
50591181--50591626	96	4.7	94	92	2	721	32	8	30	28	1.86
50591181--50591626	143	3.1	143	95	0	797	32	8	30	28	1.86
50591745--50591823	37	2.1	37	88	0	113	25	18	30	25	1.98
50607837--50607865	2	14.5	2	100	0	58	51	48	0	0	1.00
50610647--50610685	16	2.5	15	83	4	51	38	2	2	56	1.27
50611609--50611669	31	1.9	32	87	12	90	34	6	13	45	1.69
50612993--50613254	68	3.9	68	83	1	328	34	17	20	27	1.95
50614868--50614972	29	3.6	29	77	3	113	45	18	11	24	1.82
50618594--50618674	40	2.0	40	95	0	144	34	20	18	25	1.96
50627319--50627370	22	2.4	22	90	0	86	23	1	26	48	1.62
50632280--50632343	33	1.9	33	93	6	112	9	15	28	46	1.77
50639001--50639115	59	1.9	59	85	0	158	23	26	30	19	1.98
50639886--50640030	41	3.5	41	87	3	229	33	16	28	21	1.95
50641897--50641928	12	2.6	13	85	14	50	56	6	0	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50654731--50654979	50	4.8	51	85	4	263	23	28	21	26	1.99
50661205--50661261	30	1.9	29	82	10	71	29	22	3	43	1.70
50668153--50668681	125	4.2	125	84	2	679	29	18	22	30	1.97
50668123--50668681	249	2.2	250	90	0	868	29	17	22	30	1.97
50669964--50670162	22	8.8	22	76	12	163	18	0	30	51	1.47
50669951--50670162	44	4.7	44	79	9	185	19	0	29	50	1.51
50669974--50670108	72	1.9	72	86	6	193	17	0	30	52	1.44
50670441--50670485	21	2.1	21	91	0	72	4	24	35	35	1.76
50672001--50672048	19	2.4	21	76	16	57	33	2	8	56	1.41
50672368--50672421	12	4.3	12	81	9	72	20	20	1	57	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222