genome.fa.s15.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  54  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16318375--16318547	54	3.2	54	79	5	188	18	15	21	44	1.86
16320626--16320707	33	2.5	33	84	2	94	19	43	17	19	1.88
16324336--16324385	25	2.0	25	92	0	82	44	28	8	20	1.79
16325297--16325352	29	1.9	29	96	0	103	33	28	10	26	1.90
16326054--16326085	14	2.3	14	100	0	64	53	37	0	9	1.34
16329522--16329697	57	3.1	57	91	1	280	26	19	6	46	1.75
16330783--16330874	37	2.5	36	87	3	121	18	5	32	43	1.73
16330821--16330910	37	2.5	37	83	1	110	20	8	30	41	1.82
16343870--16343902	15	2.2	15	94	0	57	54	9	9	27	1.62
16345087--16345174	42	2.1	43	89	6	135	27	23	2	46	1.64
16354548--16354747	105	1.9	105	86	4	287	32	16	19	32	1.94
16354735--16355619	69	12.8	69	75	5	550	28	16	24	29	1.97
16366904--16366994	44	2.0	45	89	8	139	26	14	10	48	1.77
16368257--16368445	91	2.1	91	85	5	249	28	7	20	43	1.78
16375285--16375352	20	3.4	20	75	0	64	41	20	26	11	1.87
16377737--16377802	32	2.0	34	85	5	91	31	24	18	25	1.97
16377940--16378015	26	3.0	26	84	5	84	34	25	21	19	1.96
16386520--16386565	22	2.0	23	84	12	60	23	6	2	67	1.25
16386862--16386918	18	3.2	18	78	9	62	22	36	1	38	1.65
16386885--16386927	9	4.8	9	82	0	50	20	32	2	44	1.65
16389656--16389780	43	2.9	43	83	8	164	32	28	18	21	1.97
16392885--16392928	22	2.0	21	86	4	61	15	4	2	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16394014--16394041	14	2.0	14	100	0	56	28	7	35	28	1.84
16399071--16399117	19	2.4	20	89	3	69	12	6	23	57	1.58
16402767--16403115	185	1.9	184	90	1	565	26	16	19	38	1.92
16433962--16433990	2	14.5	2	100	0	58	0	48	0	51	1.00
16442073--16442109	9	4.1	9	92	0	65	45	13	10	29	1.77
16442646--16442674	9	3.2	9	100	0	58	31	0	0	68	0.89
16443044--16443069	5	5.2	5	100	0	52	23	19	19	38	1.93
16444217--16444723	251	2.0	251	99	0	1005	29	17	20	31	1.96
16445407--16445432	5	5.2	5	100	0	52	42	19	19	19	1.90
16446179--16446238	30	2.0	30	83	3	75	40	0	38	21	1.54
16446451--16446487	9	4.1	9	92	0	65	29	10	13	45	1.77
16448063--16448129	9	7.4	9	79	0	80	41	20	10	26	1.85
16448232--16448256	13	1.9	13	100	0	50	12	0	48	40	1.40
16450093--16450238	37	4.0	37	93	1	242	24	21	16	36	1.94
16450202--16450470	46	5.6	46	84	10	331	28	21	14	35	1.93
16450245--16450456	52	4.2	52	85	7	292	28	22	13	35	1.92
16450202--16450470	98	2.7	98	92	0	448	28	21	14	35	1.93
16455307--16455360	23	2.3	23	83	0	63	22	29	22	25	1.99
16471220--16471290	34	2.1	34	97	0	133	57	18	0	23	1.40
16473577--16473624	11	4.1	11	79	12	51	27	4	2	66	1.21
16479420--16479459	16	2.5	16	88	8	55	40	5	30	25	1.77
16479689--16479735	18	2.6	18	90	6	69	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16479704--16479903	61	3.3	61	72	12	214	52	5	1	41	1.30
16479677--16479910	120	2.0	119	97	0	441	52	4	0	42	1.27
16479677--16479858	61	3.0	60	72	12	192	53	3	0	42	1.21
16479707--16479890	59	3.1	59	70	20	191	51	4	1	42	1.30
16480088--16480160	34	2.1	34	97	0	137	49	21	2	26	1.63
16483574--16483613	14	2.9	14	84	0	53	32	7	17	42	1.77
16483582--16483648	35	1.9	35	87	3	100	31	10	13	44	1.77
16483597--16483636	20	2.0	20	85	0	53	27	12	12	47	1.77
16492669--16493048	202	1.9	202	81	9	470	28	12	12	45	1.79
16493499--16493523	12	2.1	12	100	0	50	68	0	8	24	1.16
16493656--16493732	27	2.9	25	74	22	68	62	3	0	33	1.14
16493642--16493740	26	3.5	28	73	8	85	61	3	0	35	1.11
16493768--16493820	9	5.7	10	78	12	51	58	1	0	39	1.09
16493768--16493820	19	2.8	18	81	13	63	58	1	0	39	1.09
16493642--16493821	10	18.7	9	65	19	62	61	3	0	35	1.15
16493845--16493899	23	2.5	21	82	11	65	60	5	0	34	1.20
16494459--16494529	9	7.6	9	73	14	54	33	1	1	63	1.12
16494458--16494554	10	9.9	10	70	12	58	32	2	4	60	1.27
16494488--16494529	19	2.1	21	86	8	61	30	0	0	69	0.89
16494625--16494699	31	2.4	31	86	6	98	29	0	6	64	1.19
16494732--16494764	17	1.9	17	88	11	50	15	6	0	78	0.93
16500582--16500634	25	2.2	25	83	10	65	47	7	11	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16507384--16507419	17	2.2	16	90	9	56	63	5	0	30	1.17
16507370--16507663	103	3.1	92	75	17	262	58	14	0	26	1.42
16507382--16507864	98	5.0	101	76	11	433	56	14	0	28	1.45
16507395--16507937	190	2.8	188	79	12	448	56	14	0	27	1.45
16508243--16508318	28	2.7	28	91	0	125	44	3	7	43	1.51
16514228--16514319	48	1.9	48	84	0	121	26	10	14	48	1.76
16517308--16517408	44	2.3	44	83	6	116	25	23	22	27	2.00
16521402--16521517	60	1.9	60	85	3	162	22	15	19	42	1.89
16521402--16521576	60	2.9	60	80	7	160	23	16	17	42	1.88
16522204--16522250	18	2.6	18	89	0	67	55	0	42	2	1.12
16522216--16522251	6	6.0	6	100	0	72	50	0	50	0	1.00
16522611--16522643	16	2.1	16	100	0	66	36	6	36	21	1.78
16522866--16522907	15	2.9	15	82	10	52	52	0	0	47	1.00
16522892--16523079	61	3.1	61	67	14	181	48	6	1	42	1.39
16522995--16523030	18	2.1	18	89	5	56	61	0	0	38	0.96
16522895--16523078	59	3.1	59	67	22	166	48	7	1	42	1.40
16523115--16523165	16	3.1	16	76	15	50	58	0	1	39	1.09
16523117--16523151	18	2.0	17	88	5	52	54	0	2	42	1.15
16522857--16523152	120	2.5	120	93	2	506	49	5	2	42	1.37
16523167--16523465	91	3.3	91	95	1	528	46	3	3	46	1.35
16524885--16524947	23	2.8	21	78	21	74	53	22	6	17	1.65
16526548--16526590	23	2.0	21	81	9	50	18	0	16	65	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16526577--16526612	16	2.2	16	95	5	63	27	0	5	66	1.13
16528647--16528738	33	2.8	33	79	0	94	14	46	11	27	1.79
16528925--16529089	77	2.2	77	91	1	260	28	7	9	54	1.60
16532344--16532431	27	3.3	27	85	0	122	29	25	28	17	1.97
16535592--16535647	9	5.8	9	78	14	58	64	3	0	32	1.11
16535595--16535647	10	5.3	10	77	4	54	66	3	0	30	1.10
16537672--16537700	14	2.0	15	93	6	51	27	0	20	51	1.47
16538854--16538969	43	2.7	42	85	10	162	25	21	28	25	1.99
16546907--16546980	34	2.2	34	92	0	121	20	8	32	39	1.82
16548098--16548283	94	2.0	94	100	0	372	36	21	4	37	1.75
16548931--16549062	41	3.2	38	75	6	93	32	25	19	21	1.97
16550886--16550911	13	2.0	13	100	0	52	15	15	0	69	1.20
16550896--16551016	57	2.1	57	89	7	183	23	22	5	47	1.72
16561418--16561586	69	2.4	69	85	0	239	32	15	16	34	1.91
16561495--16561744	106	2.4	106	89	0	392	34	18	15	31	1.92
16576162--16576215	26	2.1	26	96	0	99	44	14	7	33	1.73
16579047--16579118	25	2.8	26	76	16	78	41	9	15	33	1.80
16579990--16580019	12	2.5	12	94	0	51	6	30	40	23	1.80
16581246--16581315	25	2.8	25	80	8	88	25	21	25	27	1.99
16582778--16582820	21	2.1	20	86	4	59	23	23	4	48	1.69
16585437--16585493	24	2.5	22	81	10	62	49	17	10	22	1.77
16586541--16586622	25	3.3	25	73	19	80	32	19	24	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16598135--16598204	26	2.7	26	88	6	106	42	11	15	30	1.82
16603849--16603890	15	2.8	15	89	7	59	64	2	0	33	1.07
16603848--16603888	20	2.0	20	86	9	57	60	2	0	36	1.10
16608805--16608859	28	2.0	27	83	13	69	61	0	9	29	1.26
16609010--16609057	8	6.3	7	83	11	51	64	0	2	33	1.05
16609317--16609357	19	2.3	17	87	8	55	60	0	0	39	0.96
16614350--16614454	27	3.9	26	78	14	115	34	18	1	45	1.60
16614350--16614454	40	2.6	40	93	0	183	34	18	1	45	1.60
16614351--16614455	13	7.8	13	77	13	97	34	17	1	46	1.59
16617085--16617121	18	2.0	19	89	5	58	43	13	0	43	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222