genome.fa.s15.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  134  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43589384--43589410	14	1.9	14	100	0	54	44	18	0	37	1.50
43590293--43590323	15	2.1	15	93	0	53	25	3	19	51	1.62
43590868--43591186	23	14.0	22	70	14	96	29	3	26	41	1.72
43590833--43591183	182	1.9	182	94	1	614	29	3	25	41	1.73
43590869--43591180	46	6.8	46	74	7	244	30	3	25	40	1.72
43592123--43592194	36	2.0	36	100	0	144	36	19	22	22	1.95
43594682--43594829	55	2.6	54	84	7	163	41	0	2	54	1.19
43595988--43596035	22	2.2	22	85	7	62	29	4	10	56	1.52
43598572--43598633	21	3.0	21	95	0	115	12	19	19	48	1.81
43599125--43599286	79	2.1	79	98	0	315	36	6	20	36	1.78
43605308--43605374	29	2.3	29	82	10	75	20	16	17	44	1.86
43616663--43616707	21	2.1	21	83	0	54	53	6	2	37	1.40
43619241--43619274	17	1.9	17	88	5	50	38	35	23	2	1.70
43619718--43619778	30	2.0	31	84	9	81	49	0	1	49	1.10
43624631--43624682	27	1.9	27	96	0	95	25	15	7	51	1.69
43625305--43625369	25	2.6	25	69	13	62	35	23	13	27	1.93
43625605--43625670	24	2.8	24	75	9	64	25	25	16	31	1.96
43627350--43627519	72	2.4	72	83	2	198	24	15	22	37	1.93
43639420--43639483	25	2.6	25	82	5	76	35	12	17	34	1.87
43644961--43646362	469	3.0	467	92	1	2274	23	11	26	37	1.89
43647516--43647568	28	1.9	27	84	3	70	35	9	13	41	1.76
43650191--43650219	12	2.4	12	100	0	58	72	20	6	0	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43656371--43656413	19	2.2	20	84	12	54	39	4	30	25	1.76
43663411--43663455	13	3.4	13	82	11	56	15	17	15	51	1.77
43665633--43665871	50	4.7	50	82	5	223	23	28	20	27	1.99
43674967--43675079	27	4.2	26	83	6	129	16	18	20	44	1.87
43677000--43677245	49	4.8	50	80	6	221	23	28	20	27	1.99
43678521--43678562	12	3.5	12	75	12	50	23	42	0	33	1.55
43689233--43689417	101	1.8	102	91	3	311	24	17	27	30	1.97
43689230--43689415	51	3.7	49	82	5	212	24	17	27	30	1.97
43691642--43691749	44	2.5	44	89	3	146	45	10	25	18	1.81
43691767--43691872	33	3.2	33	82	5	99	43	16	22	17	1.88
43697111--43697298	51	3.7	50	82	3	216	31	25	15	27	1.96
43704891--43704972	26	3.0	27	79	13	96	23	19	25	31	1.98
43713817--43713860	23	1.9	23	90	0	70	27	2	25	45	1.65
43713987--43714125	42	3.3	42	82	4	172	15	18	19	46	1.85
43713987--43714125	21	6.6	21	72	6	84	15	18	19	46	1.85
43716284--43716582	50	5.9	50	76	8	232	28	18	28	25	1.98
43719572--43719634	19	3.5	20	66	29	61	26	19	12	41	1.87
43719561--43719637	33	2.3	33	95	0	145	28	18	11	41	1.85
43719561--43719647	33	2.6	32	87	7	129	27	17	13	41	1.87
43719699--43719733	18	2.1	18	89	10	56	31	5	20	42	1.75
43733166--43733200	5	7.0	5	93	0	52	25	14	0	60	1.35
43735413--43735478	25	2.6	25	77	18	73	56	6	6	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43735583--43735619	15	2.3	17	86	9	51	72	0	2	24	0.97
43737330--43737823	44	11.0	44	74	9	325	29	20	17	31	1.96
43737375--43737546	91	1.9	91	87	2	256	30	22	19	27	1.98
43749970--43750009	20	2.0	21	85	5	55	42	5	5	47	1.47
43753870--43754041	83	2.1	83	96	1	317	40	14	10	34	1.80
43757789--43758239	114	4.0	114	89	0	690	23	22	26	27	1.99
43758848--43758890	14	3.2	14	83	9	54	20	0	41	37	1.53
43758867--43758891	12	2.1	12	100	0	50	16	0	52	32	1.44
43758860--43758907	19	2.4	20	82	6	53	22	0	45	31	1.53
43758934--43759261	95	3.6	93	80	11	374	28	2	26	42	1.67
43759310--43759363	21	2.6	21	72	21	51	50	1	5	42	1.36
43759353--43759396	8	5.2	8	82	17	54	56	0	9	34	1.31
43759358--43759406	9	5.4	9	88	9	73	61	0	8	30	1.25
43759394--43759433	20	2.0	20	90	5	62	77	0	0	22	0.77
43759402--43759443	20	2.2	19	83	8	50	80	0	2	16	0.81
43759590--43760339	397	1.9	397	95	0	1349	31	17	24	26	1.97
43759590--43760339	198	3.8	199	94	0	1324	31	17	24	26	1.97
43762132--43762178	21	2.2	21	84	0	58	40	12	0	46	1.42
43762439--43762493	28	2.0	28	85	0	74	27	21	10	40	1.87
43762794--43762967	46	3.6	46	71	15	154	47	18	0	33	1.53
43762892--43762975	8	10.5	8	73	14	59	48	16	0	34	1.47
43762892--43763133	17	13.6	17	66	24	65	47	16	0	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43762919--43762975	9	6.8	8	80	7	60	49	17	0	33	1.47
43762923--43762972	25	2.0	26	88	4	75	48	20	0	32	1.50
43762892--43762975	34	2.3	36	88	8	118	48	16	0	34	1.47
43763070--43763133	25	2.5	26	87	2	94	43	14	1	40	1.54
43763639--43763907	43	6.3	43	89	1	407	26	20	30	21	1.98
43767137--43767226	45	2.0	44	87	6	128	31	3	28	36	1.74
43767137--43767243	45	2.5	43	82	11	125	32	2	29	34	1.72
43767371--43767412	15	2.7	16	82	14	52	52	2	0	45	1.13
43767380--43767421	15	2.9	15	82	10	52	52	0	0	47	1.00
43767511--43767545	18	2.0	17	88	5	52	54	0	0	45	0.99
43767419--43767605	60	3.1	60	67	13	168	48	7	3	41	1.47
43767369--43767665	119	2.5	121	94	2	510	49	5	2	42	1.38
43767467--43767654	59	3.2	58	69	10	173	50	4	3	42	1.38
43775582--43775623	18	2.2	19	83	8	50	14	7	7	71	1.29
43791523--43791577	26	2.1	27	82	3	67	52	7	3	36	1.47
43791577--43791616	16	2.6	16	88	4	55	77	2	12	7	1.07
43792130--43792277	46	3.1	46	64	17	104	42	4	18	35	1.69
43792130--43792351	96	2.3	96	86	5	306	39	4	19	37	1.71
43792384--43792799	126	3.3	126	92	0	672	33	18	21	26	1.96
43796893--43796985	11	8.5	11	86	3	107	44	0	32	23	1.54
43797409--43797448	13	2.8	14	85	14	55	0	22	0	77	0.77
43801899--43801927	6	4.8	6	100	0	58	0	31	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43802316--43802376	29	2.1	29	81	6	70	40	6	0	52	1.27
43816718--43816902	101	1.8	102	83	3	248	24	17	27	30	1.97
43816911--43816999	45	2.0	45	95	0	160	24	17	24	32	1.97
43822607--43822687	26	3.2	25	64	22	60	24	16	27	32	1.96
43822694--43822783	45	2.0	46	91	2	146	23	17	25	33	1.96
43826551--43826657	36	3.0	36	82	5	137	28	20	21	29	1.98
43826714--43826757	21	2.1	21	91	0	70	40	6	31	20	1.79
43826735--43827158	51	8.1	51	71	8	267	30	17	25	26	1.97
43826623--43826848	123	1.8	123	87	3	339	29	16	26	27	1.97
43826724--43827179	159	2.9	159	92	0	752	31	17	25	25	1.97
43827229--43827477	138	1.8	138	82	5	324	30	19	20	29	1.97
43827177--43827534	182	2.0	182	84	4	472	31	18	20	28	1.97
43827172--43827531	44	8.0	44	77	8	314	31	18	21	28	1.97
43827172--43827619	226	2.0	227	93	0	763	31	18	20	29	1.96
43827494--43827578	44	1.9	44	81	9	102	34	16	17	31	1.93
43827650--43827733	44	1.9	44	90	0	132	33	16	20	29	1.95
43827675--43827801	45	2.8	44	80	3	128	35	17	20	26	1.95
43827698--43827823	45	2.8	45	79	4	139	33	15	23	28	1.94
43827794--43827899	44	2.4	45	80	3	108	32	16	22	28	1.96
43833134--43833167	17	1.9	18	88	5	52	5	26	8	58	1.51
43834528--43834566	19	2.1	19	100	0	78	46	15	5	33	1.68
43842299--43842448	27	5.4	28	91	1	205	28	12	26	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43842299--43842448	55	2.7	56	88	3	214	28	12	26	33	1.92
43849200--43849237	19	2.0	19	89	0	58	34	21	7	36	1.82
43849290--43849331	18	2.3	19	83	4	50	35	4	4	54	1.42
43851340--43851386	17	2.7	17	90	3	67	42	4	6	46	1.48
43851770--43851808	20	2.0	20	90	5	62	56	5	7	30	1.49
43854821--43854885	17	3.5	18	77	10	60	58	3	1	36	1.23
43855139--43855168	16	1.9	15	93	6	51	33	10	0	56	1.32
43857042--43857113	20	3.6	20	84	0	81	36	22	31	9	1.87
43860909--43861151	44	5.6	44	76	3	267	26	23	20	29	1.99
43860909--43861154	87	2.8	87	91	0	393	26	23	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222