genome.fa.s18.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  100  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33766079--33766132	27	2.0	27	100	0	108	29	11	37	22	1.89
33774459--33774515	29	2.0	29	89	0	87	40	0	5	54	1.23
33779116--33779330	112	1.9	112	98	0	412	31	20	8	39	1.84
33784682--33784747	27	2.4	28	87	2	98	42	0	3	54	1.15
33785365--33785407	20	2.2	20	100	0	86	18	41	9	30	1.82
33786501--33786544	22	2.0	22	100	0	88	36	13	22	27	1.92
33786739--33786770	17	1.9	16	93	6	55	37	9	0	53	1.34
33789230--33789307	20	4.0	20	77	1	86	35	21	33	8	1.85
33789232--33789308	40	1.9	39	84	2	100	35	23	32	9	1.86
33789673--33789711	20	2.0	20	90	10	62	51	0	0	48	1.00
33789675--33789722	20	2.6	18	81	12	60	54	0	2	43	1.12
33789702--33789760	25	2.2	26	91	8	93	52	0	3	44	1.17
33790611--33790653	21	2.0	21	86	8	61	48	0	0	51	1.00
33797177--33797259	42	2.0	42	100	0	166	31	16	20	31	1.95
33798121--33798169	25	2.0	25	84	8	64	57	2	2	38	1.22
33798190--33798247	8	7.1	8	74	21	50	37	0	0	62	0.96
33798190--33798229	17	2.3	18	87	12	57	37	0	0	62	0.95
33798196--33798247	24	2.2	24	85	0	68	36	0	0	63	0.95
33802257--33802371	42	2.7	42	78	2	106	27	25	24	22	2.00
33804388--33804438	21	2.5	20	78	9	57	21	0	31	47	1.51
33812242--33812283	14	3.2	14	80	19	63	66	0	0	33	0.92
33812237--33812283	14	3.6	13	78	18	53	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33814223--33814286	29	2.2	29	82	2	74	45	9	14	31	1.76
33814242--33814312	29	2.4	30	85	4	99	45	11	11	32	1.75
33815792--33815860	24	3.2	24	61	26	62	28	17	13	40	1.87
33815788--33815869	41	2.0	41	100	0	164	29	19	12	39	1.88
33817812--33817851	14	2.8	14	84	3	53	25	0	2	72	0.97
33819010--33819039	8	3.8	8	100	0	60	0	20	13	66	1.24
33827517--33827626	55	2.0	55	100	0	220	40	14	16	29	1.88
33834063--33834136	39	2.0	36	89	7	112	62	0	4	33	1.14
33834682--33834713	12	2.5	13	95	5	57	21	0	40	37	1.54
33834313--33834874	229	2.5	225	90	6	859	35	3	19	42	1.67
33835190--33835230	21	2.0	21	85	9	57	4	17	43	34	1.70
33835493--33835535	18	2.4	18	92	0	68	44	6	27	20	1.77
33838040--33838080	21	2.0	20	85	4	55	51	0	0	48	1.00
33838039--33838091	17	2.7	21	70	29	62	52	0	0	47	1.00
33838040--33838156	62	1.9	59	86	5	162	50	2	3	43	1.32
33838130--33838242	19	6.1	18	71	21	83	51	2	3	42	1.33
33840387--33840446	22	2.7	23	73	19	63	66	6	0	26	1.16
33840396--33840429	4	8.0	4	90	9	50	73	2	0	23	0.97
33841783--33841834	23	2.3	22	75	21	54	9	23	1	65	1.32
33841828--33841866	18	2.2	18	85	0	51	12	23	2	61	1.43
33844209--33844263	22	2.5	22	75	16	60	69	3	0	27	1.05
33844218--33844251	4	8.0	4	90	9	50	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33852393--33852450	19	2.7	22	84	10	68	36	8	17	37	1.80
33855236--33855346	54	2.1	53	86	8	156	32	20	21	25	1.98
33855483--33855538	21	2.6	21	83	8	69	62	1	7	28	1.32
33855750--33855978	94	2.4	94	81	3	264	21	26	21	30	1.99
33855750--33855990	48	5.1	48	79	6	208	22	25	20	31	1.98
33856457--33856557	45	2.2	46	82	3	123	36	19	20	22	1.95
33856481--33856633	46	3.2	47	78	7	132	30	20	22	26	1.98
33857071--33857205	47	2.9	46	86	5	173	25	22	20	31	1.98
33857080--33857284	47	4.5	43	75	15	146	24	22	20	32	1.98
33857072--33857285	88	2.3	94	75	10	210	24	22	20	33	1.97
33858931--33858966	18	2.0	18	100	0	72	33	16	27	22	1.95
33861917--33861959	20	2.2	20	83	8	52	72	2	4	20	1.14
33861955--33862301	98	3.5	100	83	6	403	57	15	1	24	1.46
33861936--33862301	195	1.9	194	82	8	458	59	15	1	24	1.44
33863205--33863423	49	4.6	47	78	7	212	33	20	22	24	1.97
33863205--33863315	46	2.4	46	81	1	114	36	18	21	23	1.95
33863205--33863443	96	2.5	95	83	4	279	33	20	22	23	1.97
33863205--33863443	47	5.0	48	79	7	229	33	20	22	23	1.97
33863918--33864061	47	3.1	47	78	5	157	24	23	20	31	1.98
33864524--33864766	49	5.0	48	78	7	201	33	20	24	21	1.97
33864972--33865014	20	2.1	21	91	4	70	27	4	2	65	1.25
33865155--33865265	52	2.1	52	83	8	136	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33868063--33868108	23	2.1	23	84	8	60	43	15	4	36	1.66
33868063--33868121	22	2.7	22	82	7	66	40	16	5	37	1.71
33872372--33872481	39	2.8	38	81	2	130	49	8	5	37	1.56
33876343--33876380	4	9.0	4	94	5	58	23	0	2	73	0.95
33878725--33878763	18	2.2	18	85	0	51	61	2	23	12	1.43
33880155--33880183	12	2.3	13	94	5	51	24	0	0	75	0.80
33880143--33880196	21	2.5	20	74	11	54	27	0	3	68	1.06
33882331--33882443	19	6.1	18	70	21	83	42	3	2	51	1.33
33882480--33882534	16	3.5	16	85	5	76	49	0	0	50	1.00
33882417--33882531	57	1.9	62	84	8	159	44	3	2	49	1.33
33885004--33885045	17	2.4	18	88	4	59	21	26	7	45	1.77
33885816--33885846	12	2.6	12	100	0	62	35	41	0	22	1.54
33885657--33886207	224	2.5	221	88	8	791	41	19	3	35	1.68
33886382--33886455	39	2.0	36	89	7	112	33	4	0	62	1.14
33909734--33909846	19	6.1	18	71	21	83	51	2	3	42	1.33
33911809--33911854	16	2.8	17	80	9	60	73	4	0	21	1.00
33911809--33911851	15	2.8	16	86	10	54	76	2	0	20	0.89
33915584--33915638	22	2.5	22	75	16	60	69	3	0	27	1.05
33915593--33915626	4	8.0	4	90	9	50	73	2	0	23	0.97
33923861--33923918	19	2.7	22	84	10	68	36	8	17	37	1.80
33923887--33923932	21	2.1	22	84	8	58	36	4	15	43	1.66
33923874--33923932	22	2.7	23	79	7	61	37	5	16	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33926783--33926897	55	2.1	53	85	7	151	33	20	20	25	1.97
33927045--33927102	21	2.7	21	83	5	71	62	1	6	29	1.31
33927287--33927567	49	5.7	49	78	5	255	25	24	19	29	1.99
33928051--33928201	47	3.1	48	80	4	171	34	19	23	23	1.96
33928695--33928914	49	4.6	48	79	7	216	25	22	20	32	1.98
33929691--33929743	21	2.5	22	77	17	67	66	0	33	0	0.92
33929831--33930204	199	1.9	195	83	7	486	24	1	14	59	1.44
33929831--33930204	99	3.8	99	85	4	456	24	1	14	59	1.44
33933224--33933259	18	2.0	18	100	0	72	22	27	16	33	1.95
33933824--33933866	11	4.1	10	81	18	52	74	4	0	20	1.00
33933853--33934891	110	9.6	108	83	7	1220	58	14	1	25	1.45
33933853--33934891	323	3.2	316	82	9	1251	58	14	1	25	1.45
33933853--33934891	213	4.8	208	79	11	1063	58	14	1	25	1.45
33934523--33934683	51	3.1	50	70	18	150	60	16	0	23	1.36
33934621--33934895	51	5.0	57	63	25	158	60	14	1	24	1.41
33935263--33935853	96	6.1	98	83	6	737	42	2	16	38	1.62
33935231--33935853	289	2.1	292	84	7	802	43	2	16	37	1.62
33935265--33935853	194	3.1	193	90	5	899	42	2	16	38	1.62
33935893--33936177	126	2.3	126	89	2	421	34	18	19	27	1.95
33936766--33936944	96	1.9	96	89	4	281	39	15	1	43	1.57
33936759--33936984	95	2.4	94	82	7	280	39	17	2	41	1.62
33936981--33937022	16	2.6	16	81	7	50	54	30	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33940108--33940183	40	1.9	40	86	5	109	22	27	26	23	1.99
33955897--33955946	19	2.6	19	83	0	73	2	6	10	82	0.92
33956453--33956506	18	3.1	18	89	2	74	57	29	1	11	1.44
33956453--33956506	17	3.1	17	86	2	63	57	29	1	11	1.44
33961834--33961877	16	2.8	16	71	0	52	11	0	34	54	1.36
33962050--33962471	202	2.1	202	90	0	657	33	9	13	43	1.78
33970118--33970169	13	4.0	12	74	16	50	67	0	1	30	1.02
33970124--33970184	26	2.3	28	83	10	76	65	0	1	32	1.02
33973226--33973269	18	2.5	17	78	10	52	40	0	40	18	1.50
33975595--33975625	16	1.9	16	93	0	53	48	6	9	35	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208