genome.fa.s18.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  132  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43301618--43301679	31	2.1	30	82	17	76	45	8	17	29	1.77
43302010--43302064	24	2.2	25	81	12	60	16	9	21	52	1.71
43302449--43302952	250	2.0	249	91	2	807	22	18	26	31	1.97
43309764--43309843	30	2.7	30	84	0	115	22	27	11	38	1.88
43309822--43309983	30	5.5	30	72	13	120	26	26	12	34	1.92
43309794--43309998	60	3.4	59	75	8	184	24	25	13	36	1.92
43309797--43309983	59	3.2	58	71	8	153	25	26	12	35	1.92
43311257--43311316	24	2.5	24	94	2	104	23	13	30	33	1.93
43311099--43311315	93	2.3	92	92	0	362	29	11	25	33	1.92
43313334--43313401	25	2.7	25	78	17	70	29	19	26	25	1.98
43317325--43317377	28	1.9	28	84	3	72	43	7	1	47	1.42
43319947--43320188	50	4.8	50	86	3	317	26	22	30	20	1.98
43326700--43326949	81	3.1	81	83	4	310	44	17	19	19	1.88
43326700--43326950	27	9.3	26	77	10	245	43	17	19	19	1.88
43327124--43327200	26	3.0	26	88	0	109	14	23	24	37	1.92
43327311--43327401	28	3.2	28	83	7	121	23	24	24	28	1.99
43327311--43327394	30	2.9	30	87	3	127	23	25	23	27	2.00
43331685--43331765	28	3.0	26	80	10	74	29	13	9	46	1.75
43331685--43331766	27	3.0	27	79	12	78	29	13	9	47	1.75
43332975--43333008	11	3.4	10	88	11	52	67	5	0	26	1.13
43333009--43333056	20	2.5	20	78	21	57	33	10	8	47	1.68
43336595--43336675	28	3.0	26	80	10	74	29	13	9	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43336595--43336676	27	3.0	27	79	12	78	29	13	9	47	1.75
43338572--43339126	136	4.1	136	88	2	826	45	6	8	40	1.59
43338572--43339126	273	2.0	274	91	1	907	45	6	8	40	1.59
43340489--43340682	51	3.8	51	75	4	196	24	16	27	30	1.96
43340491--43340683	102	1.9	101	88	3	289	24	16	27	31	1.97
43344179--43344355	77	2.3	77	86	6	236	34	8	7	49	1.62
43344179--43344378	77	2.6	77	81	10	207	32	8	8	50	1.63
43347366--43347409	22	1.9	24	86	9	65	47	2	9	40	1.48
43351338--43351375	3	12.7	3	100	0	76	31	0	34	34	1.58
43352409--43352461	20	2.7	20	84	0	79	49	9	7	33	1.64
43354517--43354560	22	1.9	24	86	9	65	50	0	9	40	1.34
43359615--43359666	18	2.7	20	82	8	54	21	3	34	40	1.71
43362878--43362914	12	3.1	12	88	0	56	16	27	35	21	1.94
43365349--43365410	13	4.8	13	87	0	88	29	8	27	35	1.85
43365637--43365681	19	2.4	19	85	7	56	55	0	2	42	1.12
43367672--43367723	27	1.9	27	88	0	77	57	7	28	5	1.50
43375216--43375248	14	2.4	14	94	0	57	72	0	9	18	1.10
43375873--43375944	26	2.8	26	85	2	101	34	23	26	15	1.94
43375900--43375959	26	2.3	26	82	5	68	35	23	23	18	1.96
43380487--43380532	21	2.2	21	96	0	83	45	17	13	23	1.83
43383892--43384076	101	1.8	102	91	3	311	23	15	28	31	1.95
43383888--43384074	51	3.7	51	82	4	227	24	15	28	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43383998--43384078	26	3.2	26	61	22	62	23	12	29	34	1.91
43389104--43389160	27	2.1	27	100	0	96	28	7	28	36	1.83
43391902--43391933	16	1.9	17	93	6	57	40	6	0	53	1.26
43394452--43394561	30	3.7	30	77	6	100	21	18	23	36	1.95
43398689--43398747	18	3.2	18	65	21	50	50	16	11	20	1.76
43398686--43398757	37	1.9	37	97	0	135	48	16	11	23	1.78
43406552--43406642	48	1.9	47	88	2	137	19	14	25	40	1.89
43410336--43410388	24	2.2	24	87	9	74	62	1	30	5	1.29
43410430--43410505	38	2.0	38	89	2	118	30	39	0	30	1.57
43411717--43411772	27	2.1	27	89	0	85	32	10	14	42	1.80
43422274--43422302	14	2.1	14	100	0	58	58	13	0	27	1.36
43423829--43423863	15	2.3	15	100	0	70	54	0	8	37	1.31
43424475--43424520	22	2.1	22	84	8	58	67	0	2	30	1.03
43424457--43424520	31	2.2	29	88	8	94	65	0	1	32	1.02
43424484--43424526	22	2.0	21	82	8	52	65	4	0	30	1.13
43438171--43438232	25	2.5	25	86	0	79	24	24	24	27	2.00
43444069--43444246	27	6.6	27	80	5	180	30	28	14	26	1.95
43452290--43452467	27	6.6	27	81	5	189	30	28	14	26	1.95
43452310--43452466	82	1.9	81	88	3	235	30	28	14	26	1.95
43461142--43461317	50	3.5	50	80	3	185	22	25	22	29	1.99
43467453--43467497	22	2.0	22	87	8	65	26	2	20	51	1.59
43477852--43477968	62	1.9	62	83	11	154	49	5	5	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43477947--43478034	19	4.8	18	70	20	58	51	1	2	45	1.21
43479625--43479834	43	4.9	43	84	2	251	32	26	17	24	1.97
43485486--43485528	21	2.1	20	91	4	68	41	37	0	20	1.53
43485892--43486156	41	6.5	40	78	8	185	31	27	16	23	1.96
43485908--43486150	82	3.0	81	84	4	319	31	30	16	22	1.95
43485915--43486156	123	2.0	121	82	6	292	31	30	16	21	1.95
43486200--43486250	25	2.0	26	88	3	77	33	25	13	27	1.94
43492851--43492901	25	2.0	25	100	0	102	45	19	7	27	1.78
43493375--43493488	49	2.3	49	78	1	120	19	28	24	27	1.98
43493461--43493516	29	1.9	29	96	0	103	23	25	23	28	1.99
43507870--43507909	19	2.2	19	86	4	55	32	2	12	52	1.52
43532315--43532456	60	2.4	60	80	2	151	38	18	16	26	1.92
43532358--43532444	40	2.2	40	82	0	102	36	14	18	29	1.91
43532270--43532450	100	1.8	100	84	2	247	35	18	18	26	1.94
43532368--43532442	20	3.8	20	70	0	78	34	17	20	28	1.95
43535037--43535301	27	9.9	27	78	9	141	38	20	18	23	1.93
43535037--43535180	53	2.7	53	81	5	148	41	20	18	19	1.90
43535106--43535172	26	2.5	27	85	2	91	41	26	14	16	1.87
43535160--43535300	53	2.6	54	87	2	203	36	19	17	26	1.94
43535160--43535311	80	1.9	80	84	2	207	36	18	19	26	1.94
43535357--43535412	24	2.3	24	81	6	69	17	7	28	46	1.75
43535585--43535799	32	6.7	33	79	6	219	20	20	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43535582--43535799	96	2.3	96	83	3	287	19	20	22	37	1.95
43535816--43535875	22	2.7	21	75	14	59	16	20	18	45	1.86
43538770--43538818	14	3.5	14	85	0	71	30	20	8	40	1.81
43541890--43542085	50	3.8	49	75	6	160	25	25	20	28	1.99
43544444--43544494	20	2.6	21	78	12	63	11	23	5	58	1.55
43544742--43544847	49	2.1	50	85	1	151	20	30	22	26	1.98
43556071--43556110	19	2.1	19	90	4	62	40	27	17	15	1.89
43556200--43556282	20	4.2	20	73	11	71	37	19	18	25	1.94
43563848--43563906	21	3.0	20	75	7	66	40	23	25	10	1.86
43563902--43564049	42	3.5	41	79	4	161	41	17	22	18	1.91
43571524--43571589	19	3.4	18	80	15	71	56	7	0	36	1.28
43575041--43575233	85	2.3	86	80	4	212	29	29	15	26	1.96
43575033--43575233	43	4.7	43	81	3	208	29	29	15	25	1.96
43575406--43575642	118	2.0	118	100	0	474	48	6	15	29	1.70
43576902--43576941	20	2.0	20	100	0	80	65	10	0	25	1.24
43577490--43577568	39	2.0	39	87	0	113	35	22	10	31	1.88
43578965--43579375	205	2.0	206	94	2	729	37	7	4	50	1.52
43579649--43579692	14	3.2	13	81	12	52	38	25	0	36	1.56
43579974--43580012	7	5.4	7	81	6	51	33	38	0	28	1.57
43579974--43580013	15	2.7	15	88	3	55	35	37	0	27	1.57
43579879--43580020	21	6.7	21	67	8	72	37	38	2	21	1.69
43580364--43580522	82	2.0	81	87	3	230	28	31	18	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43580371--43580522	41	3.7	40	82	3	196	28	32	18	19	1.96
43580977--43581115	70	2.0	70	91	0	224	34	11	23	30	1.90
43586479--43586514	16	2.2	16	100	0	72	22	19	38	19	1.93
43587231--43587520	120	2.4	120	91	3	485	42	3	4	50	1.37
43587361--43587416	15	4.1	14	78	14	55	41	0	0	58	0.98
43587292--43587478	61	3.1	61	67	20	183	40	3	6	49	1.44
43587472--43587506	18	2.0	17	88	5	52	45	0	0	54	0.99
43587460--43587734	147	1.9	149	96	1	509	47	2	3	46	1.33
43587619--43587653	18	2.0	17	88	5	52	45	0	0	54	0.99
43587815--43587909	45	2.1	45	88	1	138	34	26	5	33	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208