genome.fa.s18.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  197  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61062840--61063010	34	5.1	33	78	16	147	66	0	33	0	0.97
61063698--61063749	19	2.7	19	87	0	68	25	0	7	67	1.17
61063785--61063852	27	2.5	27	95	4	120	41	10	0	48	1.37
61068566--61068603	18	2.1	18	95	0	67	13	47	5	34	1.65
61068569--61068610	18	2.3	18	87	0	66	19	50	2	28	1.60
61069261--61069312	26	2.0	26	100	0	104	46	0	3	50	1.20
61069367--61069416	3	16.7	3	100	0	100	66	0	0	34	0.92
61069591--61069616	8	3.2	8	100	0	52	0	23	0	76	0.78
61069780--61069812	17	1.9	17	100	0	66	3	6	6	84	0.84
61069815--61069881	28	2.4	27	80	5	80	47	2	7	41	1.47
61072611--61072644	16	2.1	16	88	0	50	17	11	17	52	1.73
61080922--61080992	18	3.9	18	84	0	79	35	15	21	28	1.94
61080918--61080996	36	2.2	36	83	0	104	34	15	20	30	1.93
61082673--61082724	25	2.1	25	100	0	104	34	23	11	30	1.90
61085251--61085306	21	2.7	21	94	0	94	28	8	33	28	1.87
61086258--61086307	25	2.0	25	96	0	91	42	28	14	16	1.86
61091931--61092054	30	4.1	30	92	1	194	25	23	6	44	1.77
61091941--61092048	15	7.2	15	67	12	69	25	21	7	45	1.78
61096625--61096748	30	4.1	30	94	1	212	25	23	6	44	1.77
61096628--61096742	15	7.7	15	69	12	85	26	21	6	45	1.77
61099251--61099285	18	1.9	18	88	0	52	28	11	14	45	1.79
61099333--61099369	18	2.1	18	89	0	56	48	8	8	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61099617--61099647	16	1.9	16	93	0	53	35	6	9	48	1.62
61100462--61100537	34	2.2	34	86	4	100	26	13	15	44	1.83
61104033--61104181	33	4.5	33	77	9	124	24	21	20	33	1.97
61104033--61104177	66	2.2	66	82	2	175	24	22	20	32	1.98
61104171--61104257	36	2.4	36	90	0	129	35	21	16	26	1.94
61105031--61105056	11	2.4	11	100	0	52	61	7	0	30	1.24
61105160--61105190	16	1.9	16	93	0	53	45	6	0	48	1.28
61105949--61106024	34	2.2	34	83	4	91	28	13	14	43	1.83
61109250--61109325	34	2.2	34	80	0	89	28	26	19	25	1.99
61109294--61109410	33	3.5	33	76	7	103	25	22	20	31	1.98
61112224--61112274	7	7.6	7	91	4	79	45	39	0	15	1.47
61112224--61112276	13	4.0	13	88	11	81	45	37	0	16	1.48
61112500--61112567	16	4.1	18	75	11	65	72	0	0	27	0.85
61114813--61114859	21	2.2	22	92	3	78	21	38	19	21	1.94
61125011--61125054	3	14.7	3	100	0	88	31	0	0	68	0.90
61133016--61133076	30	2.0	30	93	0	104	22	22	32	21	1.98
61133674--61133701	6	4.7	6	100	0	56	14	14	0	71	1.15
61135544--61135600	30	1.9	30	88	0	87	24	35	29	10	1.89
61137877--61137967	37	2.5	37	94	0	155	16	10	39	32	1.84
61141946--61142005	22	2.5	23	81	13	68	50	8	16	25	1.73
61149527--61149572	21	2.2	21	96	0	83	21	13	6	58	1.57
61150813--61150876	30	2.2	29	80	8	76	35	7	4	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61151224--61151269	17	2.7	17	75	0	56	45	10	6	36	1.65
61157255--61157284	15	2.0	15	93	0	51	50	16	0	33	1.46
61160799--61160848	24	2.2	23	89	7	75	26	22	10	42	1.84
61160805--61160851	24	2.0	24	100	0	94	25	17	10	46	1.79
61160912--61161001	42	2.2	41	78	4	92	23	10	12	54	1.67
61164715--61164778	26	2.7	23	75	17	67	50	7	0	42	1.31
61180966--61181027	29	2.2	29	80	8	74	69	0	3	27	1.04
61183552--61183595	18	2.4	18	88	0	61	45	9	27	18	1.79
61184242--61184267	7	3.7	7	100	0	52	57	15	0	26	1.38
61185444--61185489	11	4.2	11	85	0	65	47	2	26	23	1.63
61186251--61186293	18	2.2	20	84	8	54	69	6	4	18	1.29
61188641--61188725	41	2.1	41	84	4	109	40	12	23	23	1.89
61207282--61207326	19	2.4	19	88	7	65	71	0	4	24	1.05
61207249--61207346	30	3.1	30	71	14	72	65	1	4	29	1.18
61207578--61207615	16	2.2	18	90	9	62	26	0	0	73	0.83
61207885--61207963	27	2.9	27	72	12	72	29	2	1	67	1.12
61207895--61207974	10	8.7	9	78	14	65	28	2	1	67	1.11
61208872--61208924	21	2.5	21	90	0	79	30	35	9	24	1.87
61214139--61214800	218	3.0	218	95	0	1184	30	15	24	28	1.96
61217620--61218245	89	7.0	89	90	0	941	31	15	23	29	1.95
61247568--61247613	17	2.6	19	83	16	71	60	6	8	23	1.49
61248599--61248673	28	2.5	30	81	16	86	60	2	2	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61248612--61248654	20	2.1	21	86	4	61	62	2	0	34	1.08
61248627--61248692	10	7.0	9	70	16	53	60	3	3	33	1.27
61248493--61248692	9	21.7	9	65	19	67	60	2	3	34	1.27
61248782--61248816	17	2.0	18	94	5	63	25	0	0	74	0.82
61249091--61249211	9	13.6	9	75	13	67	32	2	2	62	1.21
61249092--61249211	19	6.7	19	69	27	61	32	2	2	62	1.22
61249104--61249155	19	2.7	19	88	8	70	40	1	3	53	1.30
61250592--61250908	96	3.3	95	88	2	465	40	17	1	41	1.57
61258248--61258277	4	7.8	4	92	7	53	76	0	0	23	0.78
61261108--61261138	7	4.4	7	100	0	62	16	0	38	45	1.47
61264462--61264526	31	2.1	31	97	0	121	43	9	12	35	1.74
61265955--61266349	193	2.0	193	96	0	720	44	5	15	34	1.70
61267145--61267170	13	2.0	13	100	0	52	69	0	30	0	0.89
61268023--61268063	4	10.2	4	100	0	82	24	0	24	51	1.49
61268589--61268620	13	2.4	14	90	10	50	65	0	0	34	0.93
61268914--61268952	18	2.2	18	85	0	51	35	20	0	43	1.52
61269996--61270034	20	2.0	20	85	10	53	38	17	7	35	1.79
61278057--61278111	4	13.5	4	92	3	92	25	0	27	47	1.52
61279614--61279638	7	3.6	7	100	0	50	16	12	40	32	1.84
61281894--61281932	21	1.9	20	89	5	60	25	2	5	66	1.25
61287165--61287195	15	2.1	15	100	0	62	54	6	6	32	1.51
61287609--61287664	26	2.1	27	83	6	71	53	5	3	37	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61293153--61293208	14	3.9	14	76	23	62	60	8	5	25	1.47
61296768--61296830	30	2.1	30	88	5	92	28	4	11	55	1.55
61298622--61298681	30	2.0	30	96	0	111	10	6	18	65	1.45
61301084--61301193	29	3.8	29	75	3	87	32	24	6	36	1.81
61301739--61301816	10	7.7	10	73	21	56	78	0	17	3	0.90
61301730--61301799	22	3.3	22	74	16	67	75	0	22	1	0.88
61301741--61301808	13	4.9	13	74	15	57	77	0	19	2	0.89
61302192--61302221	16	1.9	16	93	6	53	36	3	0	60	1.14
61309285--61310614	83	16.5	81	85	7	1596	28	16	18	35	1.93
61309280--61310614	244	5.5	243	86	6	1704	28	16	18	36	1.93
61309285--61310614	164	8.2	161	83	9	1487	28	16	18	35	1.93
61310788--61310819	8	3.9	8	92	8	55	84	3	0	12	0.74
61310816--61310941	30	4.2	29	72	8	83	32	21	5	40	1.76
61311460--61311537	10	7.7	10	73	21	56	78	0	16	5	0.93
61311451--61311520	22	3.3	22	74	16	67	75	0	21	2	0.93
61311451--61311499	12	4.2	12	84	12	57	77	0	20	2	0.87
61311462--61311505	13	3.2	13	83	6	52	77	0	18	4	0.94
61311912--61311944	15	2.2	15	89	10	50	39	3	0	57	1.14
61314828--61314983	42	3.7	43	76	17	157	30	26	17	25	1.97
61328550--61328597	21	2.4	18	80	13	51	58	2	0	39	1.10
61329188--61329229	22	1.9	22	90	9	68	61	4	2	30	1.29
61329244--61329556	134	2.3	137	83	7	379	43	11	8	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61335781--61335823	15	2.8	15	86	13	61	34	4	0	60	1.17
61335858--61335913	29	1.9	29	88	0	85	35	1	5	57	1.32
61337214--61337285	29	2.4	29	93	4	117	37	18	11	33	1.86
61342484--61342516	15	2.2	15	89	10	50	18	15	0	66	1.25
61342660--61342733	38	1.9	39	88	2	114	62	0	1	36	1.04
61343410--61343461	22	2.4	22	84	9	63	65	3	1	28	1.21
61345066--61345109	21	2.1	21	83	8	54	27	4	0	68	1.09
61345557--61345607	20	2.6	20	85	14	63	58	7	0	33	1.27
61345586--61345632	23	2.0	24	87	4	69	55	2	0	42	1.12
61346269--61346323	27	2.0	27	96	0	101	23	34	18	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208