genome.fa.s18.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  135  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44107336--44107461	50	2.5	50	84	3	164	26	21	30	22	1.99
44107734--44107773	12	3.3	12	92	0	62	50	7	22	20	1.73
44107747--44107785	20	2.0	20	90	10	62	56	5	23	15	1.59
44112770--44112807	20	1.9	20	94	0	67	47	13	21	18	1.82
44115129--44115306	27	6.6	27	84	3	205	29	28	15	26	1.96
44115150--44115305	82	1.9	81	88	3	233	29	28	15	26	1.96
44118721--44118941	43	5.1	43	89	0	334	31	32	16	19	1.94
44119140--44119199	18	3.4	18	64	13	52	40	10	6	43	1.64
44123725--44123783	7	8.4	7	79	7	57	33	47	0	18	1.49
44123705--44123776	21	3.4	21	76	1	63	37	43	0	19	1.51
44124312--44124357	20	2.4	19	85	7	58	65	4	4	26	1.30
44124364--44124685	41	7.7	41	81	5	376	28	25	22	23	1.99
44124723--44124858	40	3.4	40	82	5	159	22	21	22	34	1.97
44130260--44130476	40	5.6	39	85	7	246	23	20	27	28	1.99
44130330--44130511	79	2.3	80	81	1	215	25	20	27	26	1.99
44138161--44138383	40	5.6	40	91	1	306	23	20	28	27	1.99
44138161--44138418	80	3.2	80	84	3	236	24	20	28	26	1.99
44144567--44144646	40	2.0	40	85	0	106	32	23	15	28	1.95
44152661--44153143	114	4.2	114	82	3	571	31	18	23	25	1.97
44152718--44153143	227	1.9	228	90	2	678	31	18	23	26	1.98
44153022--44153285	142	1.9	142	89	1	413	33	17	23	25	1.96
44152909--44153403	255	1.9	255	80	4	570	32	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44155833--44155879	18	2.5	19	83	16	62	44	0	4	51	1.21
44156453--44157300	36	23.5	37	78	12	648	49	15	1	33	1.55
44156474--44157168	27	25.6	27	83	10	792	50	14	1	33	1.54
44156453--44157168	63	11.4	63	84	6	886	50	14	1	33	1.53
44157194--44157258	25	2.6	25	83	9	71	46	21	0	32	1.52
44157264--44157309	7	6.0	7	90	9	56	52	17	0	30	1.45
44162810--44162875	21	3.1	21	84	0	87	33	19	43	3	1.66
44162840--44162887	12	4.2	12	74	15	57	37	20	41	0	1.53
44163321--44163576	43	6.0	42	85	4	289	26	21	19	32	1.97
44163336--44163576	42	5.6	42	87	2	284	25	20	19	34	1.96
44163336--44163575	85	2.8	82	83	7	291	25	20	19	34	1.96
44166426--44166523	37	2.6	38	73	4	90	30	25	19	24	1.98
44166430--44166565	41	3.4	41	72	9	120	35	24	16	24	1.95
44167539--44167579	5	8.2	5	94	0	73	56	0	2	41	1.13
44167576--44167625	11	4.5	11	97	0	91	44	8	0	48	1.32
44183607--44183912	42	7.3	41	86	4	371	26	32	18	22	1.97
44183607--44183872	127	2.1	127	88	3	385	25	32	19	22	1.97
44188217--44188269	17	2.8	20	83	11	67	54	18	13	13	1.70
44188422--44188528	21	5.0	21	74	7	54	45	31	0	22	1.53
44188525--44188558	15	2.3	15	94	0	59	44	38	0	17	1.49
44188698--44188831	66	2.0	66	95	0	241	40	7	5	46	1.57
44189079--44189195	40	2.9	40	85	7	157	22	22	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44206861--44206936	29	2.6	29	83	6	82	42	3	3	50	1.39
44207767--44207903	49	2.8	48	87	8	138	52	8	3	35	1.48
44207790--44207903	49	2.3	49	95	3	201	50	7	4	37	1.52
44207929--44207990	30	2.0	31	84	9	83	37	0	0	62	0.95
44209712--44209760	18	2.7	17	81	6	53	38	18	2	40	1.62
44210692--44210727	17	2.1	18	94	5	65	13	38	30	16	1.88
44215240--44215269	3	10.0	3	100	0	60	66	0	0	33	0.92
44216157--44216233	19	3.7	21	80	13	68	40	16	6	36	1.75
44216157--44216214	22	2.6	22	81	7	64	41	17	5	36	1.72
44216193--44216246	19	2.8	19	97	0	99	35	14	11	38	1.82
44216809--44216918	44	2.5	45	77	11	120	33	20	17	28	1.95
44217055--44217574	44	12.7	44	81	13	518	29	26	19	25	1.99
44217030--44217501	78	5.7	83	77	14	413	29	25	19	25	1.99
44217055--44217571	122	4.2	125	81	12	532	29	26	19	25	1.99
44217055--44217576	166	3.2	166	88	4	773	28	26	19	25	1.99
44217432--44217532	34	3.0	34	97	2	186	26	25	23	23	2.00
44218587--44218624	20	1.9	20	88	0	58	15	5	10	68	1.36
44219704--44219769	25	2.6	25	83	9	71	59	4	16	19	1.54
44221707--44221777	35	2.0	35	100	0	142	29	19	19	30	1.97
44222555--44222602	3	16.0	3	95	0	87	64	0	2	33	1.05
44222777--44222819	23	1.9	22	90	4	68	53	2	9	34	1.46
44223506--44223563	22	2.6	22	78	7	55	39	15	5	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44223544--44223616	19	3.7	19	89	7	119	35	15	12	36	1.84
44234517--44234615	50	2.0	51	91	2	164	33	18	8	40	1.80
44236419--44236455	18	2.1	18	89	0	56	81	0	5	13	0.86
44236780--44236839	29	2.1	29	84	3	77	40	15	8	36	1.77
44237386--44237430	23	2.0	23	100	0	90	62	6	4	26	1.39
44237983--44238014	16	2.0	16	93	0	55	28	0	0	71	0.86
44237999--44238028	11	2.8	11	95	5	53	36	0	0	63	0.95
44237959--44238075	50	2.3	51	89	2	173	34	2	0	63	1.08
44237991--44238111	40	3.2	37	73	24	92	32	0	0	66	0.97
44238049--44238074	11	2.4	11	100	0	52	38	0	0	61	0.96
44237992--44238099	12	8.5	13	69	17	50	31	0	0	67	0.97
44238006--44238098	12	7.2	12	69	15	53	30	1	0	68	0.96
44238482--44238685	105	1.9	105	98	0	399	42	18	4	34	1.71
44247910--44247944	12	3.0	11	88	12	52	22	0	25	51	1.48
44264340--44264390	25	2.0	25	100	0	102	25	11	31	31	1.92
44264827--44264944	26	4.3	26	79	10	110	41	8	27	22	1.83
44264872--44264937	31	2.1	31	97	0	123	39	10	24	25	1.87
44266200--44266252	25	2.1	25	85	0	70	26	24	20	28	1.99
44266961--44267168	43	4.9	42	83	2	218	25	28	18	26	1.98
44266961--44267185	85	2.6	84	79	5	254	26	28	18	26	1.98
44268799--44268989	86	2.2	86	89	0	283	43	18	6	31	1.76
44271585--44271639	22	2.3	24	81	12	69	41	3	36	18	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44272801--44272983	14	12.9	14	69	14	79	45	31	2	20	1.63
44272872--44272983	7	15.7	7	69	14	59	48	28	0	22	1.57
44272900--44272969	22	3.2	22	73	16	65	45	27	1	25	1.62
44273290--44273478	82	2.3	80	87	4	272	32	25	19	22	1.97
44273290--44273524	41	5.8	41	77	6	194	31	28	18	22	1.97
44273294--44273524	82	2.9	81	83	3	243	32	28	17	22	1.96
44273559--44273637	39	2.0	40	80	7	90	24	24	18	32	1.97
44273756--44273792	18	2.1	18	89	0	56	24	8	29	37	1.84
44277426--44277481	29	1.9	29	100	0	112	32	16	17	33	1.92
44283526--44283596	22	3.2	21	79	16	72	36	0	1	61	1.05
44283868--44283905	16	2.4	17	86	8	53	57	0	5	36	1.21
44284152--44284181	15	1.9	16	93	6	53	43	0	0	56	0.99
44287056--44287134	28	2.8	28	78	14	83	49	11	11	27	1.73
44290308--44290342	15	2.2	16	95	5	63	5	20	0	74	1.02
44290324--44290403	20	4.1	19	74	7	63	7	16	3	72	1.22
44290324--44290417	41	2.3	41	83	8	122	6	18	3	72	1.20
44306903--44306983	39	2.1	39	97	0	153	40	14	7	37	1.74
44310857--44310922	34	1.9	34	96	0	123	36	22	7	33	1.83
44319010--44319101	38	2.4	38	82	5	107	28	29	22	19	1.98
44319270--44319315	23	2.0	24	82	4	58	30	28	0	41	1.56
44319454--44319482	3	9.7	3	100	0	58	65	0	0	34	0.93
44319751--44319796	10	4.8	10	82	17	62	13	10	2	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44320266--44320307	9	4.8	9	77	16	52	54	0	2	42	1.13
44326415--44326441	13	2.1	13	100	0	54	14	29	48	7	1.71
44327417--44327466	17	2.8	18	76	17	50	24	4	4	68	1.24
44327438--44327475	17	2.2	17	86	9	51	21	0	2	76	0.91
44331700--44331728	6	4.8	6	100	0	58	13	0	0	86	0.58
44348705--44348736	10	3.2	10	95	0	55	62	21	0	15	1.32
44350513--44350665	28	5.5	28	91	1	229	31	29	13	25	1.94
44350513--44350665	83	1.8	83	88	2	236	31	29	13	25	1.94
44350512--44350686	56	3.1	55	88	2	233	32	30	13	24	1.93
44358641--44358793	28	5.5	28	91	1	229	31	29	13	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208