genome.fa.s18.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  123  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40481618--40482048	129	3.3	129	86	2	515	29	20	18	30	1.97
40481850--40482091	85	2.8	88	77	6	251	31	21	18	28	1.97
40481885--40482088	89	2.3	89	80	5	220	30	21	18	29	1.97
40481547--40482091	44	12.4	45	69	7	242	29	19	19	31	1.97
40482257--40482744	45	11.0	45	77	4	479	23	23	22	29	1.99
40482254--40482744	89	5.5	89	83	0	624	23	23	23	29	1.99
40482253--40482744	177	2.8	176	85	3	646	23	23	23	29	1.99
40483836--40483913	7	10.7	7	78	13	68	0	19	0	80	0.71
40483835--40483927	20	4.8	19	76	18	86	1	19	0	79	0.79
40483835--40483917	16	5.1	16	74	20	75	0	20	0	79	0.73
40483849--40483925	9	8.4	9	76	15	61	1	19	0	79	0.81
40483836--40483932	26	3.8	24	78	18	83	2	17	0	80	0.81
40483836--40483934	43	2.3	43	80	13	105	2	17	0	80	0.80
40489768--40489819	25	2.1	25	85	0	68	42	13	0	44	1.44
40493072--40493136	26	2.4	28	84	7	80	36	0	0	63	0.95
40493043--40493130	40	2.2	41	82	6	110	31	1	0	67	0.99
40503312--40503353	18	2.5	18	81	11	54	33	0	4	61	1.17
40506994--40507030	18	2.0	19	89	5	58	51	0	2	45	1.15
40507130--40507228	9	10.4	9	71	20	60	63	2	3	31	1.21
40507130--40507228	28	3.5	27	78	13	83	63	2	3	31	1.21
40507130--40507229	10	10.4	10	68	12	50	64	2	3	31	1.20
40507195--40507243	20	2.4	20	82	3	53	61	0	6	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40513447--40513539	44	2.1	44	84	9	118	35	26	4	33	1.76
40513528--40513560	16	2.1	16	100	0	66	24	33	6	36	1.80
40516795--40516826	13	2.4	14	85	15	50	62	12	0	25	1.30
40516805--40516911	39	2.8	39	94	1	180	47	12	9	30	1.72
40522277--40522308	13	2.4	14	85	15	50	62	12	0	25	1.30
40522287--40522401	39	3.0	38	83	8	135	48	12	6	33	1.65
40527219--40527288	33	2.1	34	92	5	117	40	15	7	37	1.75
40529033--40529071	18	2.2	18	90	9	62	5	20	2	71	1.17
40532293--40532463	28	5.5	32	69	13	117	23	8	10	56	1.61
40532293--40532399	33	3.4	33	79	8	98	23	8	8	59	1.53
40534419--40534504	38	2.3	38	95	2	156	55	8	6	29	1.55
40535069--40535093	6	4.2	6	100	0	50	32	52	0	16	1.44
40541552--40541610	29	2.0	29	96	0	109	32	20	15	32	1.93
40547368--40547429	30	2.1	30	93	0	106	37	20	24	17	1.94
40551488--40553055	524	3.0	524	97	0	2915	30	17	23	29	1.97
40555745--40555802	28	2.1	28	96	0	107	20	5	32	41	1.75
40556836--40556868	13	2.8	12	90	9	50	36	9	15	39	1.79
40558070--40558405	51	6.6	50	74	4	296	28	14	26	30	1.95
40558066--40558407	102	3.4	102	93	0	567	29	14	26	29	1.95
40565213--40565252	21	1.9	21	84	0	53	55	0	17	27	1.43
40574229--40574364	49	2.8	49	80	5	159	28	23	25	22	1.99
40612417--40612663	50	4.8	52	80	8	274	26	23	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40615502--40615590	45	2.0	45	97	0	169	22	24	14	38	1.92
40616660--40620406	759	4.9	760	89	1	5459	29	25	11	33	1.91
40627279--40627430	27	5.6	27	93	3	241	26	13	28	30	1.94
40627279--40627430	55	2.8	55	94	0	259	26	13	28	30	1.94
40631756--40631904	78	1.9	77	91	1	244	23	10	22	43	1.84
40637443--40637468	5	5.2	5	100	0	52	42	19	19	19	1.90
40637558--40637583	10	2.6	10	100	0	52	46	19	11	23	1.82
40638228--40638287	30	2.0	31	90	3	95	38	0	41	20	1.52
40638476--40638512	9	4.1	9	85	0	56	32	10	10	45	1.74
40639330--40639381	20	2.6	20	87	0	77	53	0	25	21	1.45
40639331--40639387	20	2.8	19	84	10	69	50	0	28	21	1.48
40653845--40653993	71	2.1	71	87	0	208	33	19	17	29	1.95
40659903--40659927	13	1.9	13	100	0	50	4	32	8	56	1.47
40662706--40662758	13	4.1	13	75	0	52	32	28	7	32	1.85
40663111--40663136	11	2.4	11	100	0	52	30	15	7	46	1.74
40682536--40682621	42	2.0	43	91	6	140	24	22	2	51	1.60
40683098--40683302	68	3.0	68	92	1	340	18	30	14	37	1.90
40687169--40687267	39	2.5	39	93	0	162	28	4	22	45	1.70
40693356--40693474	59	2.0	59	100	0	238	52	8	7	31	1.60
40702181--40702205	7	3.6	7	100	0	50	0	28	0	72	0.86
40705023--40705061	20	2.0	20	85	10	53	58	2	0	38	1.12
40705198--40705236	20	2.0	20	85	10	53	58	2	0	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40704904--40705438	176	3.0	176	99	0	1063	46	6	7	40	1.57
40705374--40705412	20	2.0	20	85	10	53	58	2	0	38	1.12
40709784--40710086	40	7.6	40	89	2	405	27	27	20	24	1.99
40717770--40718032	40	6.6	40	88	3	325	26	27	20	24	1.99
40720202--40720253	26	2.1	24	85	7	68	44	1	1	51	1.23
40720332--40720366	18	2.0	17	88	5	52	45	0	0	54	0.99
40720332--40720386	16	3.4	16	80	16	53	49	0	1	49	1.11
40720488--40720522	18	2.0	17	88	5	52	45	0	0	54	0.99
40720320--40720635	156	2.0	157	96	0	580	48	5	3	42	1.41
40720758--40720793	16	2.2	16	100	0	72	38	36	0	25	1.56
40723234--40723260	13	2.1	13	100	0	54	44	7	7	40	1.60
40729135--40729172	17	2.3	17	86	13	53	28	7	0	63	1.23
40729954--40730005	27	1.9	27	84	0	68	55	3	0	40	1.18
40730192--40730291	31	3.3	31	87	5	125	19	13	14	54	1.72
40730213--40730292	29	2.7	30	88	3	108	22	12	12	52	1.72
40730192--40730317	31	4.1	30	81	10	121	19	12	15	52	1.74
40732680--40732704	13	1.9	13	100	0	50	40	28	0	32	1.57
40736537--40736595	30	2.0	30	87	6	86	54	0	0	45	0.99
40736575--40736665	37	2.5	37	88	0	128	48	2	1	48	1.21
40736782--40736835	16	3.4	16	76	0	63	33	20	1	44	1.62
40736930--40736964	14	2.5	14	85	0	52	48	8	0	42	1.33
40737041--40737093	25	2.0	27	82	7	65	75	3	16	3	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40738702--40738730	15	1.9	15	100	0	58	72	0	0	27	0.85
40738703--40738739	15	2.4	15	90	4	56	75	0	0	24	0.80
40738898--40738955	17	3.3	18	79	11	59	63	1	0	34	1.04
40738898--40738947	16	3.0	16	83	11	64	64	2	0	34	1.05
40739786--40739876	41	2.2	41	90	1	139	31	19	5	42	1.74
40747876--40747913	12	3.2	12	85	3	51	44	18	0	36	1.50
40759716--40759791	21	3.5	22	85	5	102	32	6	25	35	1.82
40760438--40760522	42	2.0	42	100	0	170	34	16	21	28	1.95
40762498--40762549	26	2.0	27	88	3	79	42	42	3	11	1.59
40762930--40762998	20	3.6	19	77	11	61	5	21	4	68	1.29
40763681--40763726	24	1.9	24	81	0	56	34	8	4	52	1.52
40763992--40764070	30	2.7	29	85	11	108	31	11	1	55	1.43
40776511--40777047	174	3.1	175	91	2	864	32	19	19	28	1.96
40777035--40777219	100	1.9	100	81	6	232	32	22	19	25	1.97
40777057--40777219	50	3.3	50	74	5	141	33	21	20	24	1.97
40777431--40777471	16	2.5	17	80	11	50	75	7	0	17	1.02
40777441--40777486	21	2.1	23	84	8	60	76	4	0	19	0.96
40777558--40777608	26	1.9	27	92	4	86	41	41	3	13	1.63
40778741--40778786	24	1.9	24	81	0	56	34	8	4	52	1.52
40779051--40779128	28	2.8	28	82	7	95	30	11	2	55	1.49
40783577--40783754	27	6.6	27	84	3	205	29	28	15	26	1.96
40783598--40783753	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40791635--40791812	27	6.6	27	84	3	205	29	28	15	26	1.96
40791656--40791811	82	1.9	81	88	3	233	29	28	15	26	1.96
40794783--40794832	12	4.1	12	76	5	55	46	6	16	32	1.71
40794899--40794936	18	2.1	18	85	9	51	60	7	15	15	1.57
40796260--40796319	22	3.0	20	83	13	72	73	0	8	18	1.08
40797957--40798102	73	2.0	73	95	0	265	18	20	18	42	1.89
40800922--40800971	12	4.1	12	76	5	55	46	6	16	32	1.71
40801038--40801075	18	2.1	18	85	9	51	60	7	15	15	1.57
40803664--40803791	30	4.3	29	84	9	136	34	25	3	37	1.72
40803664--40803788	60	2.1	59	89	5	189	34	25	2	37	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208