genome.fa.s18.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  136  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44358641--44358793	83	1.8	83	88	2	236	31	29	13	25	1.94
44358640--44358814	56	3.1	55	88	2	233	32	30	13	24	1.93
44373077--44373133	28	2.1	28	78	15	66	5	21	1	71	1.14
44376334--44376365	10	3.2	10	95	0	55	62	21	0	15	1.32
44386844--44386886	20	2.2	20	100	0	86	48	4	30	16	1.66
44391208--44391385	27	6.6	27	82	5	180	29	28	15	26	1.96
44391229--44391384	82	1.9	81	88	3	233	29	28	15	26	1.96
44393905--44393944	22	1.9	22	90	10	66	50	15	10	25	1.74
44397642--44397853	40	5.3	39	79	5	228	26	28	20	24	1.99
44397642--44397853	80	2.7	80	88	0	309	26	28	20	24	1.99
44405583--44405612	15	2.0	15	100	0	60	53	13	6	26	1.64
44405667--44405878	40	5.3	39	81	5	246	26	28	21	23	1.99
44405667--44405878	80	2.7	80	90	0	327	26	28	21	23	1.99
44413979--44414050	30	2.4	30	100	0	144	69	5	2	22	1.22
44421605--44421699	20	4.5	22	70	7	72	23	13	13	49	1.78
44421619--44421698	22	3.8	22	72	8	67	23	15	12	48	1.78
44421599--44421699	42	2.4	42	83	1	141	22	12	13	50	1.76
44434970--44435064	46	2.1	46	97	0	181	41	22	3	33	1.69
44442847--44442880	17	2.0	17	100	0	68	23	11	23	41	1.87
44442850--44442888	17	2.3	17	90	0	60	28	12	23	35	1.91
44451109--44451149	20	2.0	20	95	0	73	24	21	14	39	1.91
44460250--44460306	30	1.9	30	88	0	87	33	8	26	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44462615--44462666	17	3.1	17	94	0	86	26	11	21	40	1.87
44462623--44462673	17	3.0	17	94	0	84	27	11	21	39	1.88
44462643--44462681	17	2.3	17	86	0	51	28	12	23	35	1.91
44466862--44466910	26	1.9	26	87	4	73	26	30	8	34	1.86
44466853--44466912	25	2.3	25	80	11	68	26	30	10	33	1.89
44475483--44475548	27	2.4	27	89	0	96	40	13	21	24	1.89
44475534--44475758	27	8.5	27	81	3	251	32	19	23	25	1.97
44475507--44475758	54	4.7	54	83	3	278	32	19	22	25	1.97
44475776--44475933	24	6.6	24	85	0	190	29	8	18	43	1.79
44475868--44475933	13	5.4	13	73	14	68	28	7	16	46	1.74
44475881--44475923	11	3.7	11	76	11	50	25	6	16	51	1.69
44476002--44476061	27	2.2	27	85	11	79	20	25	23	31	1.98
44476015--44476067	27	2.0	27	81	7	63	22	26	20	30	1.98
44476082--44476202	32	3.8	32	86	4	172	23	19	19	38	1.93
44482337--44482394	9	6.4	9	85	0	80	41	20	10	27	1.85
44482328--44482394	27	2.5	27	90	4	91	43	19	8	28	1.81
44495426--44495563	47	2.8	49	76	6	136	33	23	16	26	1.96
44498018--44498066	19	2.6	18	81	9	62	69	6	2	22	1.21
44500365--44500417	26	2.0	26	100	0	106	26	11	28	33	1.91
44504881--44504931	9	5.6	9	75	13	50	70	1	3	23	1.14
44504880--44504933	27	2.0	27	85	7	74	66	3	3	25	1.25
44505767--44505818	16	3.3	15	78	5	50	34	1	9	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44507265--44507360	31	3.1	31	95	3	174	31	9	13	45	1.75
44507873--44507994	47	2.8	44	87	12	180	63	11	14	10	1.53
44513522--44513617	31	3.1	31	90	3	156	31	9	13	45	1.75
44513921--44513951	4	8.0	4	92	7	55	25	0	0	74	0.82
44521505--44521688	91	2.0	91	100	0	368	48	14	10	26	1.76
44523451--44523530	28	2.8	29	86	3	99	36	26	13	23	1.92
44523593--44523663	29	2.4	30	75	17	78	38	21	16	23	1.93
44523397--44523670	30	9.5	29	70	8	96	35	20	16	28	1.94
44531682--44531728	23	2.0	23	88	8	69	59	2	6	31	1.34
44539158--44539214	15	3.6	15	72	11	51	43	3	1	50	1.29
44542643--44542694	25	2.0	26	85	3	70	40	7	11	40	1.70
44544964--44545107	50	2.9	50	81	1	155	28	22	27	22	1.99
44549709--44549733	12	2.1	12	100	0	50	28	16	24	32	1.96
44550095--44550160	27	2.4	27	84	0	96	33	15	18	33	1.92
44551308--44551336	5	5.8	5	100	0	58	82	0	0	17	0.66
44553951--44554010	18	3.3	18	100	0	120	36	6	16	40	1.75
44553938--44554010	36	2.0	36	86	5	103	38	5	19	36	1.75
44555298--44555414	62	1.9	59	84	5	153	41	4	3	50	1.38
44568424--44568474	25	2.0	25	100	0	102	31	7	23	37	1.83
44568961--44569174	48	4.5	48	91	1	335	27	21	28	22	1.99
44568961--44569223	141	1.8	142	81	2	330	26	20	29	23	1.99
44568961--44569223	96	2.8	94	85	1	285	26	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44571476--44571646	64	2.7	63	78	3	162	28	8	28	35	1.86
44573318--44573406	46	1.9	46	93	4	153	43	6	12	37	1.69
44573705--44573741	16	2.3	16	86	13	58	40	8	10	40	1.70
44580736--44580771	18	1.9	19	88	5	56	38	2	11	47	1.54
44581063--44581101	19	2.2	17	86	13	53	23	20	5	51	1.67
44587284--44587386	35	3.0	34	76	7	109	18	11	31	38	1.87
44591872--44591898	9	3.0	9	100	0	54	33	22	11	33	1.89
44593948--44593972	13	1.9	13	100	0	50	0	12	0	88	0.53
44597746--44597987	50	4.7	50	79	5	184	24	27	22	26	2.00
44604094--44604212	41	2.8	42	89	5	179	40	22	9	27	1.84
44605378--44605418	21	2.0	21	85	0	55	17	24	41	17	1.89
44606128--44606174	24	2.0	24	91	0	76	42	6	0	51	1.27
44606230--44606296	27	2.5	27	92	0	107	29	29	25	14	1.95
44606339--44606467	4	32.0	4	74	20	85	70	0	28	0	0.93
44606372--44606537	34	4.7	34	80	12	167	69	0	30	0	0.89
44606388--44606463	29	2.7	29	85	6	93	72	0	27	0	0.85
44606343--44606474	18	7.3	18	72	16	87	69	0	29	0	0.94
44606390--44606486	18	5.3	18	71	20	85	70	0	29	0	0.88
44606403--44606499	18	5.3	18	72	20	69	71	0	28	0	0.87
44613030--44613071	19	2.1	21	86	8	61	71	7	0	21	1.09
44613092--44613131	11	3.7	11	86	6	64	0	30	0	70	0.88
44613092--44613132	10	3.9	10	90	9	64	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44613142--44613181	3	13.3	3	100	0	80	0	32	0	67	0.91
44613248--44613305	27	2.1	27	96	0	107	17	31	29	22	1.96
44613355--44613426	28	2.6	28	91	2	119	47	1	9	41	1.45
44620563--44620596	17	2.1	17	88	5	52	38	0	2	58	1.13
44622900--44623084	51	3.7	49	78	7	196	23	18	28	29	1.98
44623008--44623088	26	3.2	26	64	22	71	23	16	28	32	1.96
44625402--44625428	8	3.4	8	100	0	54	74	0	0	25	0.83
44630593--44630642	20	2.5	20	96	0	91	0	18	26	56	1.42
44634978--44635146	40	4.2	40	89	3	225	26	27	20	25	1.99
44634978--44635202	80	2.8	79	80	7	231	26	27	20	25	1.99
44642160--44642331	40	4.3	40	85	4	197	26	26	20	26	1.99
44642160--44642384	80	2.8	78	76	7	202	26	26	20	26	1.99
44642316--44642393	40	1.9	41	82	10	97	26	28	20	24	1.99
44647804--44648438	47	13.1	49	93	3	992	32	8	29	29	1.87
44647804--44648438	339	1.9	338	94	1	1128	32	8	29	29	1.87
44648557--44648635	37	2.1	37	88	0	113	25	18	30	25	1.98
44650955--44650984	13	2.3	13	100	0	60	6	10	50	33	1.62
44661849--44661886	16	2.4	16	90	0	58	34	2	36	26	1.71
44661868--44661956	44	2.0	46	88	4	137	28	5	30	35	1.80
44661868--44661973	39	2.5	43	83	10	121	31	4	30	33	1.78
44662118--44662154	16	2.2	17	86	13	51	59	0	0	40	0.97
44662111--44662150	14	2.9	15	82	14	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44662146--44662175	15	1.9	16	93	6	53	50	6	0	43	1.28
44662240--44662274	18	2.0	17	88	5	52	54	0	0	45	0.99
44662266--44662295	15	1.9	16	93	6	53	50	6	0	43	1.28
44662359--44662393	18	2.0	17	88	5	52	54	0	0	45	0.99
44662106--44662456	119	2.9	120	98	0	677	50	3	2	43	1.34
44662385--44662414	15	1.9	16	93	6	53	50	6	0	43	1.28
44663565--44663589	13	1.9	13	100	0	50	8	28	16	48	1.74
44691911--44692182	109	2.5	109	84	3	350	38	16	20	24	1.92
44691911--44692182	73	3.7	71	77	7	294	38	16	20	24	1.92
44691917--44692199	36	7.9	35	80	6	280	38	16	20	24	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208