genome.fa.s18.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  92  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31594098--31594187	35	2.4	37	80	12	94	36	11	4	47	1.59
31594369--31594395	6	4.5	6	100	0	54	14	0	0	85	0.61
31594370--31594421	18	2.8	19	80	5	54	21	1	1	75	1.00
31596243--31596285	19	2.3	18	84	15	52	20	23	13	41	1.88
31598329--31598373	6	7.0	6	85	14	63	80	2	17	0	0.82
31600934--31601609	50	13.7	48	76	7	550	31	21	19	27	1.98
31600782--31601546	294	2.6	293	86	5	1025	31	21	20	26	1.98
31600782--31601590	100	8.2	99	86	5	1051	31	21	20	27	1.98
31613586--31613628	19	2.3	18	84	15	52	20	23	13	41	1.88
31615671--31615715	6	7.0	6	85	14	63	80	2	17	0	0.82
31618192--31618949	50	15.3	49	74	11	589	31	21	19	27	1.97
31618130--31618949	100	8.2	100	88	3	1142	31	21	20	27	1.98
31619201--31620058	44	19.8	44	73	11	422	30	20	22	26	1.98
31619368--31619570	87	2.4	85	78	4	194	27	21	23	28	1.99
31619201--31620054	217	3.9	217	81	5	1021	30	20	22	26	1.98
31619724--31620009	128	2.2	129	89	1	441	31	20	22	25	1.98
31619850--31620248	174	2.3	174	80	6	432	30	19	23	26	1.98
31624432--31624771	9	39.8	9	71	14	247	31	2	20	45	1.66
31624459--31624703	59	4.1	58	83	9	228	31	3	20	45	1.67
31624599--31624637	19	2.1	19	85	9	53	30	0	17	51	1.46
31624421--31624771	25	13.7	26	74	13	243	31	2	19	45	1.65
31624741--31624835	39	2.5	39	77	3	104	36	2	15	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31624936--31624982	20	2.3	20	82	10	60	55	2	2	40	1.24
31626910--31626936	11	2.5	11	100	0	54	55	0	18	25	1.43
31627815--31627866	27	1.9	27	84	0	68	48	9	0	42	1.36
31627932--31627968	10	3.9	10	79	13	51	43	13	0	43	1.44
31629807--31629903	41	2.4	41	80	3	115	31	21	27	18	1.97
31629913--31630026	41	2.8	40	83	2	138	37	22	21	17	1.94
31629806--31630000	106	1.8	106	88	2	302	33	21	26	18	1.96
31630072--31630199	40	3.2	39	73	6	114	17	25	21	35	1.95
31635769--31635908	43	3.3	43	88	0	217	22	27	21	28	1.99
31636291--31636343	28	1.9	27	96	0	88	54	11	13	20	1.69
31636415--31636476	25	2.4	26	89	2	90	40	1	14	43	1.55
31636415--31636486	17	4.2	17	72	13	58	40	1	13	44	1.53
31636582--31636665	34	2.3	36	82	8	100	34	0	17	47	1.48
31636590--31636760	46	3.6	46	72	13	148	33	0	18	46	1.54
31636582--31636667	17	4.8	17	67	20	50	34	0	17	47	1.48
31639775--31640462	199	3.5	199	88	0	1011	28	24	16	30	1.97
31640611--31640709	47	2.1	48	84	1	128	44	0	10	45	1.37
31640705--31640747	21	2.0	21	86	4	59	18	2	0	79	0.85
31640715--31640739	12	2.1	12	100	0	50	16	0	0	84	0.63
31640733--31640781	9	5.4	9	88	9	73	30	8	0	61	1.25
31640731--31640786	17	3.2	18	87	10	80	33	7	0	58	1.25
31640743--31640786	8	5.2	8	86	13	54	34	9	0	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31640775--31640829	21	2.7	20	71	23	51	41	5	3	49	1.43
31640878--31641053	89	2.0	90	94	1	309	42	28	1	27	1.65
31641034--31641063	14	2.1	14	100	0	60	26	60	0	13	1.34
31640935--31641225	104	2.8	104	85	1	397	41	28	1	27	1.66
31640954--31641238	103	2.8	101	83	4	356	42	27	1	28	1.65
31641270--31641294	12	2.1	12	100	0	50	32	52	0	16	1.44
31641271--31641313	14	3.2	13	84	12	52	37	41	0	20	1.53
31641336--31641368	14	2.3	15	94	5	59	36	33	0	30	1.58
31641922--31642243	114	2.8	114	88	0	475	26	25	22	25	2.00
31643118--31643259	25	5.7	25	77	5	126	32	15	28	23	1.95
31647591--31647661	22	3.2	23	76	15	69	74	0	2	22	0.94
31647591--31647661	13	5.3	13	75	21	67	74	0	2	22	0.94
31647631--31647664	6	5.5	6	96	3	59	79	0	0	20	0.73
31647592--31647663	12	5.7	13	73	12	53	76	0	2	20	0.91
31654003--31654058	28	2.2	24	76	17	58	57	8	1	32	1.40
31655577--31656400	44	19.0	43	71	14	363	27	22	20	29	1.98
31655578--31656408	218	3.8	218	93	0	1358	27	22	20	29	1.98
31671958--31671999	20	2.2	20	87	8	61	52	7	2	38	1.42
31677208--31677261	21	2.5	22	84	3	65	61	7	1	29	1.34
31677733--31677775	4	10.8	4	100	0	86	51	23	0	25	1.49
31686120--31686206	42	2.1	42	93	0	147	24	20	32	22	1.98
31687386--31687422	15	2.4	16	90	9	67	32	8	10	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31687497--31687537	19	2.2	20	82	13	59	41	4	2	51	1.36
31687330--31688023	174	3.9	173	88	5	935	36	4	6	51	1.50
31687778--31687827	24	2.1	24	85	7	66	36	8	4	52	1.50
31687843--31687895	19	2.8	18	74	8	52	37	5	3	52	1.43
31691107--31691303	107	1.8	109	81	6	249	31	22	14	30	1.94
31693497--31693603	49	2.3	46	81	4	124	41	7	13	38	1.72
31695261--31695317	29	1.9	30	85	3	80	54	14	1	29	1.50
31706322--31706352	16	1.9	16	93	0	53	9	9	9	70	1.33
31708503--31708853	113	3.1	113	94	0	612	26	24	21	27	1.99
31709108--31709169	8	7.1	8	76	16	61	37	0	4	58	1.20
31709116--31709183	19	3.6	20	79	16	83	38	0	5	55	1.24
31711547--31711577	16	1.9	16	93	0	53	35	25	6	32	1.82
31713095--31713134	14	2.9	14	96	0	71	55	5	0	40	1.22
31719067--31719208	66	2.2	66	89	5	216	38	19	28	14	1.91
31719204--31719253	21	2.4	21	79	0	55	34	16	42	8	1.77
31719461--31719490	14	2.1	14	100	0	60	13	0	33	53	1.40
31719573--31720017	43	10.4	43	82	4	391	27	22	27	23	1.99
31719573--31720017	86	5.2	86	81	4	431	27	22	27	23	1.99
31719617--31720017	171	2.3	171	81	3	441	27	22	27	22	1.99
31722824--31722875	25	2.0	26	82	17	65	42	1	5	50	1.37
31727587--31727756	83	2.0	83	90	0	268	18	10	20	50	1.77
31730293--31730340	21	2.3	21	85	0	60	16	39	18	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31730302--31730342	21	2.0	21	90	0	64	12	36	24	26	1.91
31735349--31735385	18	2.1	18	94	0	65	24	0	24	51	1.49
31735731--31735817	39	2.2	39	87	2	129	36	4	22	35	1.75
31737822--31737867	3	15.3	3	81	0	56	58	8	0	32	1.28
31737826--31737866	6	6.8	6	97	0	64	56	9	0	34	1.32
31738993--31739221	43	5.3	43	88	2	316	25	28	20	24	1.99
31738990--31739231	86	2.8	86	89	0	358	26	28	21	24	1.99
31740356--31740388	17	1.9	17	100	0	66	51	6	0	42	1.26
31748659--31748698	16	2.6	15	88	7	62	5	7	2	85	0.83
31748718--31748746	10	2.9	10	100	0	58	10	17	10	62	1.54
31753616--31753669	25	2.2	25	86	6	74	44	1	5	48	1.37
31754409--31754444	18	2.0	18	88	0	54	41	25	13	19	1.88
31755263--31755291	11	2.6	11	100	0	58	48	6	0	44	1.29
31763541--31763830	18	16.3	18	68	17	103	45	9	11	33	1.73
31763541--31763637	17	5.6	17	74	6	97	47	9	12	30	1.73
31764298--31764378	8	9.9	8	74	18	60	1	14	1	82	0.79
31764296--31764378	9	9.8	9	70	18	54	1	15	1	81	0.81
31764308--31764357	15	3.3	15	78	10	57	0	18	0	82	0.68
31764299--31764357	24	2.5	23	88	5	82	0	15	1	83	0.74
31765448--31765519	30	2.4	30	83	0	90	45	1	16	36	1.56
31765840--31766356	76	6.7	76	86	4	641	35	19	15	29	1.93
31765840--31766356	154	3.4	150	84	5	626	35	19	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31765840--31766356	230	2.2	230	85	6	672	35	19	15	29	1.93
31767228--31767292	18	3.7	18	87	4	80	0	0	18	81	0.69
31767239--31767302	6	10.7	6	90	9	96	0	0	15	84	0.63
31777376--31777628	18	14.3	17	69	13	120	44	10	12	33	1.76
31778096--31778166	8	8.8	8	77	13	65	0	15	1	83	0.73
31778103--31778167	14	4.5	15	72	18	57	0	16	0	83	0.66
31778095--31778164	23	2.9	24	85	10	90	0	17	1	81	0.77
31778103--31778171	12	5.9	11	77	17	68	0	17	0	82	0.67
31778095--31778169	16	4.6	16	78	15	75	0	16	1	82	0.73
31778103--31778171	24	2.9	25	87	12	101	0	17	0	82	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208