genome.fa.s18.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  105  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35059911--35059945	17	2.1	17	88	0	52	25	2	0	71	1.00
35059890--35059949	27	2.2	27	84	0	84	26	1	3	68	1.15
35064378--35064562	96	1.9	95	87	3	273	12	27	10	48	1.75
35064394--35064589	96	2.1	94	79	6	207	14	26	11	46	1.79
35065045--35065090	3	15.0	3	86	4	65	36	0	60	2	1.09
35067737--35067777	16	2.6	16	80	0	55	39	7	21	31	1.81
35070960--35071013	16	3.4	16	86	0	81	38	3	31	25	1.74
35070995--35071087	44	2.1	44	82	6	107	34	4	25	35	1.76
35071245--35071429	59	3.1	59	72	17	200	52	3	1	42	1.26
35071246--35071433	61	3.1	61	74	9	222	52	3	1	43	1.26
35071295--35071338	22	2.0	23	90	4	72	63	2	0	34	1.07
35071412--35071452	21	2.0	21	100	0	82	56	9	0	34	1.32
35071286--35071469	59	3.1	58	68	17	144	52	3	1	42	1.29
35073438--35073506	34	2.0	34	97	0	129	49	13	8	28	1.71
35076935--35077065	67	2.0	67	81	3	156	34	17	25	22	1.96
35079601--35079635	16	2.2	16	100	0	70	11	11	11	65	1.47
35087310--35087613	27	11.3	27	80	4	233	34	23	15	27	1.95
35087306--35087613	81	3.8	81	77	2	291	34	23	15	27	1.95
35087337--35087613	54	5.2	54	78	2	299	32	22	15	28	1.95
35091307--35091381	35	2.1	36	95	2	134	37	17	2	42	1.63
35098200--35098424	27	8.4	27	88	1	310	16	16	22	44	1.86
35105509--35105551	20	2.1	21	83	8	54	39	2	4	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35105535--35105572	15	2.4	16	86	4	51	50	2	2	44	1.30
35105535--35105577	15	2.7	15	85	7	50	48	2	2	46	1.27
35110758--35110844	44	2.0	44	88	0	129	27	11	13	47	1.78
35111270--35111326	29	2.0	29	85	0	78	36	5	10	47	1.61
35132921--35132963	21	2.0	21	86	8	61	34	0	6	58	1.25
35132956--35133108	58	2.7	57	81	7	159	43	2	3	50	1.32
35133275--35133345	16	4.4	16	84	10	83	29	21	7	42	1.79
35133275--35133346	32	2.3	31	90	4	108	29	20	6	43	1.78
35133808--35133846	20	2.0	19	85	14	53	53	5	15	25	1.62
35134127--35134160	8	4.0	8	85	14	50	35	5	0	58	1.22
35134110--35134168	31	1.9	31	86	6	84	35	6	0	57	1.25
35136671--35136725	21	2.6	21	88	0	74	16	32	29	21	1.95
35142891--35142964	31	2.4	31	82	8	87	31	1	0	67	0.99
35142906--35142982	33	2.4	32	87	6	111	33	1	0	64	1.01
35143263--35143302	19	2.2	19	95	4	73	52	2	5	40	1.37
35145330--35145363	17	1.9	18	88	5	52	73	2	2	20	1.09
35146645--35146691	22	2.1	22	100	0	94	31	12	31	23	1.92
35148201--35148394	50	3.9	50	84	2	221	27	21	28	21	1.99
35151727--35151791	23	3.0	22	76	13	71	41	24	18	15	1.89
35153212--35153279	25	2.8	24	70	12	59	54	1	7	36	1.37
35153427--35153462	12	3.0	12	91	0	63	55	0	11	33	1.35
35153427--35153483	24	2.4	24	82	5	62	57	1	8	31	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35154092--35154131	18	2.2	18	86	0	53	85	2	5	7	0.83
35154312--35154344	17	1.9	17	88	11	50	6	21	12	60	1.53
35155021--35155288	44	6.2	43	72	5	191	29	24	17	28	1.98
35155276--35155787	128	4.0	128	91	0	808	24	23	19	31	1.98
35156952--35156992	7	6.0	7	82	5	57	17	9	0	73	1.09
35156952--35156992	20	2.0	20	95	0	73	17	9	0	73	1.09
35157856--35157920	30	2.2	29	81	7	78	13	10	4	70	1.30
35157893--35157938	22	2.1	21	84	4	56	6	6	8	78	1.10
35157923--35157955	6	5.7	6	89	7	50	12	0	15	72	1.12
35162853--35162896	15	2.6	17	82	13	56	63	4	0	31	1.14
35162919--35162954	12	3.0	12	91	0	63	55	0	11	33	1.35
35168333--35168374	17	2.5	16	79	20	50	9	7	2	80	0.97
35168340--35168384	19	2.3	20	81	11	58	8	6	4	80	1.03
35168333--35168384	27	1.9	26	84	7	68	9	5	3	80	0.99
35171435--35171473	15	2.6	15	92	8	62	66	2	5	25	1.25
35177659--35177705	24	2.0	24	83	8	60	29	0	17	53	1.44
35188500--35188560	26	2.3	27	83	11	72	34	1	3	60	1.23
35191252--35191291	19	2.1	19	100	0	80	25	15	20	40	1.90
35200924--35201223	24	12.8	24	68	13	142	54	5	6	34	1.49
35201013--35201206	70	2.8	69	74	6	176	55	5	6	33	1.47
35201973--35202042	19	3.6	19	82	5	88	12	32	4	50	1.60
35207950--35208113	82	2.0	82	100	0	328	21	17	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35209598--35209657	20	3.3	18	69	17	52	35	1	0	63	1.05
35210236--35210293	30	1.9	30	100	0	116	27	6	22	43	1.79
35217694--35217718	13	1.9	13	100	0	50	12	24	32	32	1.91
35218155--35218196	15	2.7	16	82	14	52	45	0	2	52	1.13
35218146--35218187	15	2.9	15	82	10	52	47	0	0	52	1.00
35218299--35218333	18	2.0	17	88	5	52	45	0	0	54	0.99
35218130--35218439	157	2.0	157	96	0	575	47	4	2	44	1.38
35218479--35218588	45	2.6	43	76	11	111	32	28	5	33	1.80
35218569--35218620	16	3.2	16	91	0	86	34	36	0	28	1.58
35218767--35218803	17	2.2	17	90	9	58	56	0	0	43	0.99
35219494--35219535	19	2.2	19	83	8	50	19	0	9	71	1.13
35219536--35219568	11	2.9	12	86	13	52	66	0	0	33	0.92
35222452--35222476	9	2.8	9	100	0	50	68	8	0	24	1.16
35223906--35224273	44	8.4	43	70	10	185	26	22	20	30	1.98
35223982--35224338	85	4.1	89	70	11	231	26	22	21	30	1.98
35223934--35224338	129	3.1	129	86	2	560	26	21	20	30	1.98
35224344--35225078	50	14.7	50	73	0	527	25	19	22	32	1.97
35224338--35224975	100	6.4	100	90	0	871	26	20	21	31	1.98
35225249--35225581	44	7.6	43	67	20	181	27	24	17	29	1.98
35225092--35225655	132	4.3	132	89	1	841	27	23	18	30	1.97
35225870--35226883	100	10.1	100	89	0	1362	25	19	22	32	1.97
35225870--35226883	50	20.3	50	72	1	657	25	19	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35227026--35227490	44	10.6	43	65	20	185	27	24	18	29	1.98
35226869--35227503	132	4.8	132	89	1	940	27	23	18	30	1.98
35228736--35228825	7	12.7	7	78	10	60	1	21	1	76	0.91
35228738--35228822	37	2.4	34	83	13	100	1	22	1	75	0.94
35228754--35228822	27	2.6	26	81	9	77	0	23	0	76	0.78
35228754--35228825	10	7.6	10	77	10	71	0	22	0	77	0.76
35228731--35228821	20	4.7	20	75	15	84	1	23	1	74	0.95
35234039--35234070	3	10.7	3	100	0	64	68	31	0	0	0.90
35236208--35236237	12	2.5	12	94	0	51	73	3	16	6	1.18
35238669--35238702	17	2.0	17	94	0	59	32	11	20	35	1.89
35238847--35239057	108	2.0	108	88	0	314	19	19	32	28	1.96
35240307--35240346	19	2.1	19	85	0	53	80	0	20	0	0.72
35241277--35241330	19	2.8	19	88	0	81	38	9	14	37	1.79
35242820--35243014	98	2.0	98	95	0	354	27	10	25	36	1.89
35253772--35253810	20	2.0	20	90	5	62	48	5	10	35	1.59
35262719--35262758	17	2.3	17	86	4	53	7	17	0	75	1.03
35262727--35262771	17	2.5	17	85	7	54	6	22	0	71	1.09
35262791--35262826	7	5.1	7	100	0	72	0	27	0	72	0.85
35263367--35263424	30	1.9	31	92	3	100	18	0	18	62	1.34
35266183--35266208	11	2.4	11	100	0	52	38	7	0	53	1.30
35266224--35266255	11	2.8	12	95	4	57	43	3	0	53	1.16
35266994--35267131	72	1.9	73	81	1	170	25	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35267038--35267183	72	2.0	72	80	6	161	25	21	26	26	2.00
35267690--35267752	7	8.9	7	76	10	56	15	1	46	36	1.56
35267902--35267951	20	2.5	20	84	9	66	14	0	38	48	1.44
35268081--35268134	14	3.9	14	79	9	58	16	3	33	46	1.65
35268089--35268155	28	2.4	28	82	7	82	20	2	28	47	1.65
35269357--35269699	173	2.0	169	89	5	521	22	38	10	27	1.87
35271337--35271699	9	40.6	9	67	17	170	44	17	1	36	1.59
35271412--35271646	16	14.8	16	69	19	109	45	18	0	35	1.56
35271400--35271699	25	12.6	25	67	19	108	43	18	1	37	1.56
35271464--35271739	110	2.5	109	82	11	271	43	18	1	36	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208