genome.fa.s18.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  139  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45340214--45340251	13	2.9	13	80	11	51	57	5	0	36	1.21
45348022--45348066	19	2.4	19	84	0	54	73	2	0	24	0.95
45349324--45349354	16	1.9	16	93	0	53	35	19	9	35	1.85
45350478--45350580	33	3.2	33	63	25	83	44	4	15	34	1.68
45350467--45350594	64	2.0	64	98	0	247	46	4	16	32	1.68
45351644--45351904	35	7.5	35	76	8	230	19	11	28	40	1.86
45351658--45351849	102	1.9	102	85	2	269	21	10	27	40	1.86
45359364--45359619	35	7.3	35	85	0	314	19	14	27	38	1.91
45361387--45361414	14	2.0	14	100	0	56	35	7	0	57	1.26
45365731--45365807	29	2.6	30	83	4	111	24	25	14	35	1.93
45365669--45365861	29	6.5	29	72	10	99	22	25	13	38	1.91
45365864--45365935	28	2.6	28	86	0	108	23	18	20	37	1.94
45368846--45368903	25	2.3	25	90	0	89	27	18	20	32	1.97
45370255--45370289	10	3.5	10	100	0	70	11	22	28	37	1.89
45370245--45370290	20	2.3	21	81	11	60	19	21	23	34	1.96
45374239--45374276	17	2.3	16	90	4	58	26	2	2	68	1.16
45374247--45374284	20	2.0	20	89	5	60	23	7	2	65	1.32
45374361--45374401	20	2.0	22	85	9	59	21	12	2	63	1.40
45379768--45380386	45	13.8	45	75	8	440	27	15	25	30	1.96
45379763--45380060	134	2.2	134	86	2	393	26	15	26	31	1.96
45380034--45380386	134	2.6	133	84	2	456	28	15	24	30	1.96
45379813--45380284	224	2.1	224	86	2	653	27	15	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45380472--45380611	44	3.2	44	85	0	190	27	20	23	27	1.99
45380869--45381154	44	6.6	44	76	10	255	30	23	21	24	1.99
45380738--45381101	129	2.8	129	86	1	489	30	22	20	26	1.98
45380913--45381201	88	3.3	87	85	4	325	31	21	21	25	1.98
45380784--45381149	129	2.8	129	87	2	493	31	22	19	25	1.98
45380913--45381202	44	6.7	43	75	8	232	31	21	21	25	1.98
45382988--45383173	3	62.3	3	71	10	62	26	7	3	61	1.40
45386352--45386644	50	5.8	50	90	0	460	20	30	23	26	1.98
45388233--45388271	20	2.1	18	90	9	60	71	2	0	25	0.98
45388245--45388269	13	1.9	13	100	0	50	80	0	0	20	0.72
45398472--45398529	24	2.4	24	88	0	80	29	22	12	36	1.90
45399467--45399528	6	10.5	6	75	14	58	1	17	0	80	0.79
45399467--45399528	24	2.6	24	81	0	79	1	17	0	80	0.79
45404681--45404705	13	1.9	13	100	0	50	80	0	0	20	0.72
45406937--45406975	2	19.5	2	100	0	78	0	48	0	51	1.00
45407595--45407633	20	2.0	20	94	0	69	48	0	2	48	1.15
45407733--45407770	20	1.9	20	100	0	76	44	15	7	31	1.75
45408791--45408824	17	2.0	17	100	0	68	29	23	0	47	1.52
45410091--45410120	15	1.9	16	93	6	53	73	0	16	10	1.09
45413801--45413943	74	1.9	74	91	0	232	26	23	25	24	2.00
45423222--45423259	16	2.4	16	86	0	58	60	2	23	13	1.45
45423429--45423467	20	2.0	20	84	0	51	20	2	23	53	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45424673--45424861	47	4.0	47	79	6	195	25	14	26	32	1.95
45424647--45424860	95	2.3	96	80	8	242	26	15	26	30	1.96
45433957--45433981	13	1.9	13	100	0	50	52	0	0	48	1.00
45433955--45433999	17	2.6	17	85	0	54	46	4	0	48	1.22
45435257--45435302	24	1.9	24	100	0	92	52	0	17	30	1.45
45436842--45436871	16	1.9	16	93	6	53	50	20	0	30	1.49
45439126--45439192	32	2.1	31	83	2	80	50	2	4	41	1.37
45452038--45452071	17	2.1	15	89	10	50	11	0	11	76	1.02
45452895--45452934	21	1.9	21	84	0	53	17	35	22	25	1.95
45453468--45453562	37	2.5	37	83	8	104	20	12	38	28	1.89
45466597--45466644	12	4.4	11	78	17	55	27	0	2	70	0.98
45468180--45468234	15	3.6	14	77	15	56	14	1	5	78	1.02
45468201--45468256	23	2.5	23	85	8	71	16	0	8	75	1.05
45482619--45482647	2	15.0	2	92	7	51	48	0	0	51	1.00
45492916--45492968	6	8.8	6	91	4	63	13	0	56	30	1.37
45496474--45496563	45	2.0	45	93	0	153	37	14	21	26	1.92
45499636--45499664	14	2.1	14	100	0	58	51	27	0	20	1.47
45503485--45503549	13	5.5	13	72	20	70	43	0	9	47	1.35
45503485--45503551	23	2.9	23	91	4	109	43	0	10	46	1.38
45503672--45503736	13	5.5	13	72	20	70	43	0	9	47	1.35
45503672--45503738	23	2.9	23	91	4	109	43	0	10	46	1.38
45503405--45503779	187	2.0	187	100	0	750	46	4	8	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45507421--45507457	18	2.0	20	89	10	60	29	8	32	29	1.86
45507624--45507687	31	2.1	31	87	0	92	34	9	18	37	1.83
45512732--45512946	90	2.4	92	85	3	292	27	17	21	33	1.96
45517812--45517856	19	2.3	20	84	3	56	62	4	6	26	1.39
45521278--45521333	20	2.8	19	89	7	85	23	30	17	28	1.97
45528582--45528807	40	5.7	40	89	4	289	26	21	26	26	2.00
45540940--45541171	79	2.9	80	81	7	276	26	21	25	26	2.00
45540940--45541164	40	5.7	40	87	5	271	25	21	25	26	2.00
45540947--45541197	79	3.2	78	79	12	253	27	20	25	26	1.99
45548924--45549182	120	2.2	120	82	7	296	26	21	26	25	1.99
45548924--45549149	40	5.7	40	90	4	298	25	21	26	26	2.00
45560210--45560389	50	3.6	50	81	3	168	23	29	20	26	1.99
45560259--45560404	50	2.9	50	82	0	184	22	30	21	26	1.99
45562536--45562658	33	3.7	33	75	8	124	26	26	18	28	1.98
45562551--45562693	66	2.1	67	88	2	207	28	25	16	29	1.97
45565925--45566154	76	3.0	76	83	1	246	30	20	22	26	1.98
45571812--45571907	39	2.5	39	85	0	129	44	9	11	34	1.73
45577250--45577276	4	6.8	4	100	0	54	77	22	0	0	0.76
45584026--45584172	51	2.9	50	88	5	215	34	12	14	39	1.83
45585751--45585839	28	3.2	28	87	1	117	32	24	21	21	1.98
45585947--45586053	26	4.1	26	88	0	160	36	23	21	18	1.95
45586217--45586518	27	11.3	27	83	6	314	19	19	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45586217--45586518	81	3.8	80	79	7	346	19	19	21	40	1.92
45594163--45594208	23	2.0	23	86	0	65	67	13	0	19	1.23
45594431--45594503	19	3.8	19	96	0	137	36	16	9	36	1.81
45594408--45594503	38	2.4	39	89	6	140	38	16	8	36	1.79
45595223--45595521	44	6.9	44	69	13	172	27	23	19	29	1.98
45595106--45595532	217	2.0	218	90	1	669	26	23	20	29	1.99
45595885--45596048	44	3.7	43	86	4	186	29	26	16	26	1.97
45597301--45597352	6	8.3	6	85	10	61	0	21	0	78	0.74
45597299--45597344	17	2.6	18	89	3	67	0	21	0	78	0.76
45597292--45597354	24	2.6	24	85	7	83	0	25	0	74	0.82
45597299--45597351	17	3.1	17	84	10	63	0	22	0	77	0.77
45597307--45597354	13	3.9	12	86	10	62	0	20	0	79	0.74
45597357--45597390	11	3.1	11	100	0	68	17	17	0	64	1.29
45599503--45599542	21	1.9	21	100	0	80	17	25	10	47	1.78
45602600--45602691	19	4.8	19	94	0	166	38	16	8	36	1.79
45602577--45602691	38	2.9	38	93	5	185	39	16	7	36	1.78
45603466--45603505	18	2.3	18	86	4	55	42	2	2	52	1.28
45605638--45605751	57	2.0	57	91	0	183	35	20	21	21	1.96
45605638--45605743	29	3.7	29	78	3	108	36	19	21	21	1.95
45605709--45605791	40	2.1	40	90	0	130	30	19	27	22	1.98
45605765--45605865	28	3.6	28	75	12	91	33	17	24	23	1.96
45605749--45606055	57	5.4	57	78	4	298	32	17	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45605656--45605844	97	1.9	97	88	0	279	33	20	24	21	1.97
45605765--45605925	28	5.7	27	72	10	90	34	17	24	23	1.96
45605749--45605953	29	7.2	29	70	15	131	33	17	25	23	1.96
45609113--45609234	23	5.3	23	87	2	183	22	19	27	31	1.98
45609438--45609485	23	2.0	25	84	8	64	39	0	22	37	1.55
45622283--45622343	30	2.0	30	100	0	122	39	6	32	21	1.79
45627088--45627182	31	3.1	29	79	14	79	46	14	15	23	1.83
45627737--45627772	18	2.0	18	89	10	56	69	0	0	30	0.89
45627732--45627774	18	2.5	17	82	14	52	67	2	0	30	1.03
45629352--45629437	44	2.0	44	90	0	136	29	18	20	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208