genome.fa.s18.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  134  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43909352--43909631	44	6.5	44	73	8	252	30	18	22	28	1.97
43909346--43909544	85	2.3	85	94	0	344	30	19	21	28	1.98
43909579--43909712	67	2.0	67	95	0	241	36	17	18	26	1.94
43909450--43909841	196	2.0	196	88	2	581	32	18	20	28	1.96
43909646--43910174	44	12.3	43	70	11	228	32	19	19	28	1.97
43909666--43910169	85	5.9	85	68	13	232	30	20	19	29	1.97
43909646--43910213	129	4.4	129	83	2	642	32	19	19	27	1.97
43913719--43913758	21	2.0	20	85	5	53	55	0	35	10	1.34
43914481--43914511	15	2.0	16	93	6	55	29	0	0	70	0.87
43915471--43915532	29	2.3	27	81	15	74	48	1	1	48	1.21
43919181--43919214	9	3.7	9	84	7	50	29	38	0	32	1.58
43919179--43919219	19	2.2	19	100	0	82	31	34	0	34	1.58
43919754--43919823	21	3.4	21	78	3	72	37	21	28	12	1.90
43919771--43919883	42	2.7	42	82	5	138	43	17	23	15	1.87
43919811--43919878	21	3.2	20	72	15	66	45	17	19	17	1.86
43922007--43922055	20	2.5	20	93	0	80	36	30	4	28	1.76
43924082--43924118	6	5.8	6	90	9	56	45	16	16	21	1.84
43924093--43924247	45	3.4	45	86	1	231	41	20	18	20	1.91
43924102--43924274	45	4.2	39	79	10	134	38	21	19	20	1.93
43925258--43925283	11	2.4	11	100	0	52	0	42	7	50	1.31
43931591--43931626	6	5.7	6	90	9	54	47	13	16	22	1.82
43931601--43931755	45	3.4	45	89	0	247	41	21	18	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43931610--43931782	45	4.2	39	81	10	143	38	21	19	19	1.93
43931959--43932043	40	2.2	40	82	6	102	41	20	5	32	1.76
43932764--43932789	11	2.4	11	100	0	52	0	42	7	50	1.31
43935277--43935304	4	7.0	4	100	0	56	75	0	0	25	0.81
43936633--43936677	23	2.0	23	100	0	90	37	26	22	13	1.91
43938472--43938545	36	2.1	36	89	0	112	40	17	20	21	1.91
43950217--43950256	18	2.2	18	86	8	55	37	10	40	12	1.77
43950937--43951527	207	2.9	207	78	2	630	30	17	23	28	1.97
43959029--43959078	26	1.9	26	84	8	66	30	6	6	58	1.46
43959835--43959905	29	2.5	28	77	20	69	46	5	2	45	1.41
43962033--43962136	49	2.1	49	91	3	165	31	7	9	50	1.63
43963517--43963559	21	2.0	21	82	8	52	34	2	6	55	1.39
43963525--43963710	103	1.8	101	88	4	284	40	1	6	51	1.39
43963646--43963784	38	3.7	35	72	12	116	41	2	7	48	1.44
43963623--43963787	76	2.2	76	93	1	278	40	2	7	50	1.43
43963769--43963804	18	2.0	18	100	0	72	33	0	0	66	0.92
43963906--43964251	102	3.4	102	97	0	656	42	2	5	49	1.39
43963701--43964127	119	3.7	117	90	6	632	41	2	5	50	1.40
43964383--43964475	44	2.1	44	86	9	127	36	26	4	32	1.76
43964730--43964772	21	2.0	21	86	0	59	39	2	23	34	1.67
43965209--43965334	26	4.9	26	84	3	139	16	27	20	34	1.94
43965455--43965514	25	2.4	25	76	13	70	16	26	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43968333--43968383	24	2.0	26	85	11	70	3	15	3	76	1.08
43969105--43969131	7	3.9	7	100	0	54	25	0	0	74	0.83
43973689--43973726	7	5.0	8	81	12	53	65	0	21	13	1.26
43973689--43973726	15	2.5	15	91	8	60	65	0	21	13	1.26
43975217--43975370	49	3.1	49	72	7	168	28	23	23	24	1.99
43975171--43975575	98	4.3	94	81	9	417	27	23	27	21	1.99
43975238--43975489	49	5.3	49	72	12	156	28	22	27	21	1.99
43989962--43990000	8	5.1	8	81	12	55	66	0	20	12	1.24
43989961--43990000	15	2.7	15	88	11	64	65	0	20	15	1.28
43991313--43992108	99	8.1	99	88	3	1098	28	23	26	21	1.99
43991661--43991799	44	3.0	44	71	13	118	29	24	25	20	1.99
43991318--43992074	50	15.5	49	66	11	302	28	23	26	21	1.99
43993013--43993062	24	2.0	26	85	14	70	6	14	4	76	1.13
43993017--43993050	17	1.9	18	88	5	52	5	11	2	79	1.02
43993521--43993564	21	2.1	21	87	8	63	29	2	6	61	1.34
43993707--43993822	7	15.1	7	72	15	79	28	6	1	62	1.30
43993790--43993835	21	2.2	21	84	7	58	34	0	0	65	0.93
43998236--43998340	52	2.0	52	94	0	183	43	19	22	14	1.87
43999638--43999686	25	2.0	25	83	0	62	24	20	16	38	1.92
43999645--43999706	25	2.5	25	83	0	70	25	17	19	37	1.94
44001234--44001267	11	2.8	13	91	8	54	44	11	8	35	1.72
44002313--44002517	103	2.0	103	95	0	365	20	18	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44002418--44002593	76	2.3	76	99	0	343	18	17	28	35	1.94
44002453--44002591	43	3.5	43	73	18	163	20	15	28	35	1.93
44002311--44002731	179	2.4	178	93	1	716	20	19	27	33	1.96
44002494--44002696	103	2.0	103	96	0	370	19	19	28	33	1.96
44007845--44007907	17	3.5	17	71	12	63	36	3	9	50	1.51
44007923--44007990	9	7.6	9	86	0	91	29	8	16	45	1.77
44007915--44007990	18	4.2	18	87	0	98	28	7	18	44	1.78
44007923--44007990	27	2.5	27	90	0	109	29	8	16	45	1.77
44009824--44009859	18	2.1	17	89	5	54	19	0	8	72	1.10
44010539--44010576	18	2.2	17	86	13	51	0	15	2	81	0.80
44013715--44013782	36	1.9	35	82	8	84	42	1	2	52	1.25
44013762--44013801	20	2.1	19	95	4	71	42	0	0	57	0.98
44013711--44013878	58	2.9	58	77	11	157	41	2	3	52	1.31
44013711--44013857	57	2.5	58	80	8	156	40	1	4	53	1.28
44022654--44022764	41	2.7	41	85	2	134	35	22	18	24	1.96
44026467--44026719	69	3.7	69	84	2	247	18	21	23	36	1.95
44026467--44026892	138	3.1	135	77	4	361	19	21	23	36	1.95
44026533--44026897	69	5.3	69	79	4	297	20	20	23	35	1.96
44027273--44027328	18	2.8	21	79	17	57	53	3	0	42	1.18
44027309--44027394	11	8.5	11	70	23	64	59	0	1	39	1.05
44027319--44027360	17	2.5	17	96	0	75	57	0	0	42	0.99
44027336--44027413	41	1.9	41	92	5	131	62	0	1	35	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44034488--44034544	12	4.5	12	74	20	53	49	1	1	47	1.22
44034948--44035036	27	3.1	29	72	19	80	44	1	3	50	1.25
44034778--44035140	197	1.8	199	85	3	500	38	6	7	47	1.58
44035016--44035330	156	2.0	156	82	9	386	37	10	8	43	1.69
44034779--44035203	197	2.1	199	82	7	488	39	7	7	46	1.59
44035424--44035461	20	2.0	18	90	10	58	36	0	7	55	1.29
44051490--44051606	40	2.9	40	87	2	155	30	17	32	19	1.95
44063953--44064158	43	4.8	43	81	3	200	27	29	18	24	1.98
44064179--44064223	20	2.2	20	80	11	56	42	0	4	53	1.21
44068429--44068510	21	3.9	21	82	3	92	36	39	0	24	1.56
44068453--44068482	14	2.1	14	93	0	51	26	50	0	23	1.50
44068509--44068542	7	4.7	7	85	7	50	41	32	0	26	1.56
44068505--44068542	14	2.7	15	84	12	53	44	28	0	26	1.54
44068776--44068930	7	21.9	7	68	12	57	45	33	1	20	1.59
44068777--44068816	21	2.0	21	95	5	73	52	30	0	17	1.45
44068855--44068930	14	5.4	14	78	9	73	47	32	1	18	1.57
44069152--44069268	40	2.9	40	82	3	101	30	28	17	23	1.97
44069182--44069268	40	2.1	41	89	6	133	31	31	17	20	1.96
44069371--44069449	40	2.0	40	87	7	115	21	26	18	32	1.97
44069438--44069462	12	2.1	12	100	0	50	44	32	16	8	1.76
44072435--44072470	13	2.8	13	86	0	54	2	16	0	80	0.83
44072831--44072870	21	1.9	21	85	10	55	50	2	5	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44072853--44073309	152	3.0	148	82	7	548	42	3	10	43	1.56
44073087--44073140	20	2.6	20	76	5	54	35	1	5	57	1.33
44073806--44073836	16	2.0	16	93	6	55	19	6	3	70	1.22
44074497--44074531	13	2.6	14	81	9	54	71	2	0	25	1.00
44085331--44085439	31	3.6	30	71	12	82	29	17	12	40	1.87
44087856--44087902	20	2.3	21	81	7	60	12	21	21	44	1.85
44091530--44091593	21	3.0	20	86	4	83	46	17	25	10	1.80
44097717--44097761	22	2.0	21	83	16	54	73	2	0	24	0.95
44099091--44099582	162	3.0	162	94	1	840	33	17	16	32	1.93
44105569--44105595	14	1.9	14	100	0	54	44	22	3	29	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208