genome.fa.s18.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  157  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51128695--51128850	20	7.8	20	70	7	102	38	4	17	39	1.70
51131771--51131822	20	2.6	20	84	0	68	40	0	19	40	1.51
51131836--51131875	20	2.0	20	90	0	62	37	2	17	42	1.63
51131935--51131988	20	2.7	21	80	8	67	50	3	11	35	1.56
51131974--51132082	41	2.7	39	73	14	105	41	7	12	38	1.71
51132122--51132175	21	2.7	20	80	5	63	44	5	11	38	1.63
51132420--51132488	32	2.1	33	89	7	106	55	8	8	27	1.60
51135245--51135310	29	2.3	29	83	0	87	51	1	0	46	1.10
51135246--51135309	16	4.1	15	75	18	60	51	1	0	46	1.10
51135264--51135307	13	3.2	13	76	17	52	50	2	0	47	1.13
51136122--51136201	42	1.9	42	92	0	133	45	25	18	11	1.83
51139121--51139163	20	2.2	20	86	0	59	48	0	6	44	1.29
51141611--51141659	3	16.3	3	80	16	57	32	0	2	65	1.04
51141681--51141712	14	2.1	16	88	11	50	37	0	12	50	1.41
51146967--51146999	15	2.3	15	89	5	50	75	6	12	6	1.16
51148289--51148957	131	5.1	132	89	3	922	27	17	24	29	1.98
51148544--51148912	44	8.4	44	72	10	238	27	17	25	29	1.98
51148289--51148957	263	2.5	263	87	4	931	27	17	24	29	1.98
51150195--51150240	3	15.3	3	78	17	51	32	0	2	65	1.05
51150262--51150293	14	2.1	16	88	11	50	37	0	12	50	1.41
51153789--51153819	16	1.9	16	100	0	62	12	41	32	12	1.81
51153790--51153827	16	2.4	16	90	0	58	15	44	26	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51157725--51157785	32	1.9	32	83	12	81	49	1	4	44	1.33
51157744--51157785	20	2.1	20	86	0	57	47	0	7	45	1.30
51181510--51181560	23	2.2	23	82	6	59	58	5	21	13	1.56
51184418--51184485	16	4.2	16	92	0	118	27	0	36	35	1.58
51184720--51184754	18	2.0	17	88	5	52	54	0	0	45	0.99
51184864--51184905	15	2.9	15	82	10	52	50	0	0	50	1.00
51184608--51184921	155	2.0	156	93	1	542	44	3	4	47	1.41
51184853--51185150	120	2.5	120	89	6	451	49	5	2	42	1.38
51184974--51185025	15	3.6	15	80	12	56	53	3	0	42	1.19
51185198--51185341	47	3.1	46	67	16	127	51	4	1	43	1.29
51185093--51185373	91	3.0	93	82	9	304	49	3	2	44	1.33
51185166--51185373	91	2.3	91	90	2	310	48	3	2	45	1.35
51185147--51185333	44	4.1	43	70	16	128	49	3	2	44	1.30
51185216--51185354	47	3.0	47	69	17	146	50	4	1	43	1.30
51188474--51188513	19	2.1	19	100	0	80	40	0	20	40	1.52
51188450--51188593	51	3.0	48	75	15	181	49	2	15	33	1.56
51188893--51188917	13	1.9	13	100	0	50	20	16	8	56	1.65
51191726--51191828	27	3.8	26	87	5	143	19	13	21	45	1.84
51191726--51191830	54	1.9	54	90	7	169	19	14	21	44	1.86
51192467--51192517	24	2.1	23	82	10	66	25	43	0	31	1.55
51193341--51193379	17	2.2	18	86	4	53	74	10	7	7	1.22
51198044--51198203	28	5.7	28	82	2	160	26	21	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51198044--51198208	56	2.9	56	79	1	179	27	21	24	27	1.99
51198590--51198753	27	6.1	27	79	5	172	18	19	19	42	1.89
51200571--51200730	28	5.7	28	82	2	160	26	21	25	26	2.00
51200571--51200735	56	2.9	56	79	1	179	27	21	24	27	1.99
51201118--51201251	27	5.0	27	80	7	148	17	19	21	41	1.91
51202860--51202989	28	4.6	28	84	0	143	25	20	25	28	1.99
51203376--51203512	27	5.1	27	82	7	154	17	18	21	42	1.89
51203743--51203784	20	2.2	19	91	4	66	19	42	21	16	1.89
51206172--51206364	38	5.1	38	84	2	226	16	17	29	37	1.91
51206172--51206364	76	2.5	76	84	3	255	16	17	29	37	1.91
51216693--51216770	40	2.0	40	89	0	120	52	3	24	19	1.62
51220290--51220778	47	10.4	47	94	0	825	28	30	8	32	1.88
51222205--51222350	37	4.0	37	91	1	233	25	21	16	36	1.94
51222314--51222582	46	5.6	46	84	10	331	28	22	14	34	1.93
51222357--51222576	52	4.3	52	84	8	290	27	23	13	35	1.92
51222314--51222582	98	2.7	98	92	0	448	28	22	14	34	1.93
51227248--51227430	40	4.6	40	80	6	194	24	26	22	26	2.00
51227738--51227816	29	2.7	29	86	5	106	27	32	15	24	1.95
51227798--51227943	43	3.4	43	96	0	274	26	34	15	23	1.94
51229799--51229873	37	2.0	37	87	5	107	26	30	21	21	1.98
51229996--51230390	47	8.4	47	94	0	673	28	30	8	31	1.88
51242264--51242327	30	2.1	29	81	13	76	43	14	3	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51243864--51243962	38	2.6	38	78	0	99	35	13	19	32	1.90
51251601--51251801	75	2.7	75	84	4	280	34	27	16	20	1.95
51251776--51251825	26	1.9	26	91	0	82	30	30	22	18	1.97
51251879--51251913	18	1.9	18	88	0	52	34	34	0	31	1.58
51259004--51259131	33	3.6	33	69	20	105	35	25	18	19	1.95
51258925--51259135	75	2.8	76	89	2	320	33	26	19	21	1.97
51259214--51259252	18	2.2	18	90	0	60	35	28	0	35	1.58
51259489--51259546	30	1.9	30	85	0	80	32	22	6	37	1.81
51282353--51282391	11	3.4	12	89	10	64	66	0	5	28	1.12
51288421--51288473	27	2.0	26	82	10	63	18	11	5	64	1.46
51288621--51288959	108	3.1	109	91	2	549	32	16	16	34	1.91
51294222--51294660	44	9.9	45	71	8	272	30	24	21	22	1.99
51294269--51294665	44	9.0	44	73	8	338	30	26	21	21	1.98
51294224--51294665	89	5.0	89	83	2	539	30	25	21	22	1.98
51294224--51294665	177	2.5	177	85	2	591	30	25	21	22	1.98
51294775--51295134	45	8.0	45	76	8	340	27	15	26	30	1.96
51294768--51295134	134	2.7	135	79	7	431	27	15	26	30	1.96
51294812--51295017	44	4.6	44	74	1	169	28	16	26	28	1.97
51294775--51295134	89	4.0	89	81	3	384	27	15	26	30	1.96
51295147--51295444	44	6.8	44	74	7	212	30	20	21	27	1.98
51296907--51296949	14	2.9	15	83	12	54	34	6	0	58	1.25
51296909--51296949	11	3.4	12	80	19	50	34	7	0	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51297546--51297874	109	3.0	109	93	1	554	32	16	17	34	1.92
51298420--51298551	50	2.6	52	76	8	137	38	12	15	33	1.85
51303282--51303357	30	2.4	32	82	10	93	52	7	11	27	1.65
51305555--51305599	20	2.2	20	85	14	58	28	4	13	53	1.59
51306868--51306928	27	2.3	27	83	8	72	73	0	9	16	1.08
51306867--51306927	26	2.3	26	78	8	70	73	0	8	18	1.07
51307962--51308021	30	2.1	27	81	9	66	63	5	26	5	1.36
51320230--51320263	18	1.9	18	94	5	61	26	8	11	52	1.67
51322839--51322882	9	4.8	9	84	13	54	27	4	2	65	1.23
51322838--51322882	19	2.4	18	82	13	56	26	4	2	66	1.22
51323106--51323327	86	2.5	86	81	8	261	36	10	19	34	1.86
51325249--51325305	17	3.2	18	80	14	73	35	14	7	43	1.72
51325253--51325306	19	3.0	17	86	8	72	35	14	7	42	1.74
51326414--51326532	50	2.3	52	91	2	188	31	16	13	38	1.88
51327079--51327130	27	1.9	27	96	0	95	40	15	23	21	1.91
51327787--51327836	21	2.2	24	86	10	70	24	14	16	46	1.83
51329830--51329875	20	2.3	20	84	0	56	36	19	19	23	1.95
51329839--51329886	20	2.4	20	96	0	87	33	14	25	27	1.94
51333216--51333337	45	2.8	42	82	9	140	10	23	0	64	1.30
51333293--51333387	18	5.4	17	69	11	59	7	25	0	67	1.16
51333270--51333360	6	14.7	6	75	11	58	7	23	0	69	1.14
51335855--51335904	20	2.5	20	86	0	73	32	10	24	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51337653--51337678	13	2.0	13	100	0	52	46	7	0	46	1.31
51338068--51338106	20	1.9	21	89	5	62	35	12	28	23	1.91
51339380--51339431	18	2.9	18	80	8	61	17	17	5	59	1.56
51339436--51339534	6	16.0	6	72	8	74	5	20	2	72	1.13
51340482--51340533	10	5.1	10	81	4	59	15	3	1	78	0.98
51341688--51341713	13	2.0	13	100	0	52	46	7	0	46	1.31
51342103--51342141	20	1.9	21	89	5	62	35	12	28	23	1.91
51343645--51343693	18	2.9	17	82	17	66	40	16	18	24	1.90
51347547--51347588	15	3.1	13	83	16	50	71	0	23	4	1.05
51349033--51349104	36	2.0	36	94	0	126	29	11	19	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208