genome.fa.s18.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  171  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54824388--54824423	17	2.1	17	100	0	72	16	5	5	72	1.23
54824392--54824428	17	2.2	17	90	4	58	21	2	5	70	1.20
54831764--54831821	25	2.4	25	97	2	109	25	13	3	56	1.53
54836549--54836922	175	2.1	175	91	0	606	32	18	19	29	1.96
54836613--54836892	85	3.2	85	73	8	285	32	18	19	29	1.95
54836993--54837087	44	2.2	44	94	0	163	29	24	22	24	1.99
54842114--54842595	105	4.6	104	83	2	547	36	15	15	32	1.89
54842114--54842595	208	2.3	208	85	1	635	36	15	15	32	1.89
54842542--54842624	37	2.2	37	91	0	139	43	18	6	32	1.74
54842436--54842858	142	3.0	142	84	1	546	37	15	15	32	1.89
54842678--54842774	37	2.6	37	88	0	131	38	15	14	31	1.88
54842910--54842940	10	3.1	10	100	0	62	29	12	0	58	1.35
54850962--54850995	12	2.7	13	86	4	52	29	8	17	44	1.79
54853595--54853727	69	1.9	70	90	1	214	31	15	16	36	1.90
54855191--54855752	47	12.0	47	88	0	818	32	11	29	26	1.92
54855312--54855387	23	3.2	25	62	24	63	28	13	34	23	1.92
54855642--54855716	23	3.1	25	63	24	61	29	13	33	24	1.93
54855915--54856066	37	4.1	37	86	0	205	23	20	31	25	1.98
54857766--54857846	41	2.0	41	95	0	144	51	3	12	32	1.57
54860837--54860866	15	2.1	14	93	6	51	26	6	13	53	1.64
54862703--54862759	7	7.9	7	79	13	53	21	0	0	78	0.74
54862701--54862759	15	4.0	15	73	10	59	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54862706--54862773	18	3.5	20	77	15	81	25	0	0	75	0.81
54862696--54862772	37	2.1	38	85	7	104	23	1	0	75	0.88
54862703--54862772	36	1.9	36	88	2	104	22	0	0	77	0.78
54867086--54867114	7	4.1	7	100	0	58	13	0	41	44	1.44
54869956--54870076	34	3.7	34	75	16	137	46	4	5	42	1.49
54870251--54870292	21	2.0	21	85	0	57	4	26	40	28	1.76
54871858--54871914	11	5.2	11	81	14	64	47	0	31	21	1.51
54871871--54871917	11	4.4	10	87	12	67	51	0	29	19	1.47
54879529--54879722	41	4.7	41	79	5	214	16	22	22	38	1.93
54879527--54879722	82	2.4	82	96	1	358	16	22	21	38	1.92
54879862--54880038	82	2.2	82	97	0	336	28	15	20	35	1.93
54880938--54880974	10	3.7	10	92	0	65	43	0	13	43	1.44
54881042--54881093	27	1.9	27	88	0	77	40	0	9	50	1.35
54883958--54884104	74	2.0	74	98	0	285	50	1	6	41	1.37
54884161--54884282	18	6.4	18	67	25	74	44	18	1	35	1.60
54884142--54884599	26	18.1	26	88	6	683	47	20	0	32	1.55
54884334--54884630	19	15.6	19	67	22	87	47	20	0	31	1.53
54884540--54884627	18	4.4	18	70	25	61	45	20	0	34	1.51
54884591--54884644	9	5.7	10	79	20	55	42	20	0	37	1.52
54884565--54884630	18	3.6	18	84	10	89	46	18	0	34	1.49
54890092--54890162	21	3.4	21	80	0	79	33	18	45	2	1.64
54890386--54890419	14	2.4	14	95	0	59	17	8	20	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54890573--54890858	42	6.8	42	91	1	450	23	22	21	32	1.98
54890487--54890856	167	2.2	167	86	2	519	27	21	21	30	1.98
54890487--54890858	83	4.5	84	86	2	464	26	20	20	31	1.98
54890570--54890858	125	2.3	125	91	1	454	24	21	21	32	1.98
54897434--54897625	50	3.8	50	83	2	233	21	29	22	26	1.99
54897434--54897625	100	1.9	101	86	3	271	21	29	22	26	1.99
54897601--54897649	24	2.0	24	100	0	98	24	26	24	24	2.00
54897551--54897699	74	2.0	74	98	0	289	22	30	22	25	1.99
54897795--54897825	13	2.4	13	94	0	53	54	12	0	32	1.38
54898038--54898095	30	1.9	30	89	0	89	31	24	3	41	1.71
54917146--54917176	13	2.4	13	94	0	53	54	12	0	32	1.38
54917389--54917446	30	1.9	30	89	0	89	31	24	3	41	1.71
54936147--54936195	24	2.0	24	100	0	98	6	12	57	24	1.58
54936749--54936808	20	2.9	21	73	22	54	45	1	1	51	1.21
54936749--54936811	22	2.9	23	69	17	55	44	1	1	52	1.20
54936685--54936911	127	1.8	124	94	2	400	40	3	3	51	1.37
54939521--54939651	51	2.6	51	78	0	118	25	25	16	32	1.96
54939633--54939675	21	2.0	21	95	0	77	23	34	4	37	1.76
54939800--54939896	45	2.2	45	88	0	140	28	26	16	27	1.97
54939869--54940231	132	2.8	129	88	1	519	25	24	20	29	1.99
54941221--54941255	18	1.9	18	100	0	70	60	11	5	22	1.52
54943311--54943344	10	3.5	10	92	4	52	82	5	0	11	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54943341--54943466	30	4.3	27	73	15	90	37	16	4	41	1.70
54943341--54943487	59	2.5	59	79	7	154	34	16	6	42	1.73
54943825--54943863	16	2.5	15	87	8	51	79	0	20	0	0.73
54943938--54943973	19	1.9	19	88	5	56	75	8	11	5	1.19
54944171--54944212	21	2.0	22	90	4	68	78	0	21	0	0.75
54952779--54952812	16	2.1	16	94	0	59	47	14	5	32	1.69
54956600--54956636	14	2.6	14	86	0	56	45	32	5	16	1.70
54956746--54956798	20	2.7	20	84	0	61	41	47	7	3	1.50
54956627--54956903	138	2.0	139	93	0	475	41	36	5	16	1.72
54960348--54960411	30	2.1	30	82	0	74	50	7	1	40	1.41
54964770--54964806	19	2.0	19	85	15	51	32	16	5	45	1.70
54966684--54966744	29	2.1	28	84	3	77	21	0	24	54	1.45
54972542--54972592	21	2.4	21	87	6	68	17	41	5	35	1.74
54975810--54975877	32	2.1	33	91	8	113	38	4	7	50	1.51
54976155--54976205	25	2.1	25	82	7	61	52	1	1	43	1.23
54976311--54976373	22	2.8	22	77	15	67	57	1	3	38	1.24
54980652--54980703	25	2.1	25	96	0	95	23	9	15	51	1.72
54981579--54981629	25	2.1	25	82	7	61	52	1	1	43	1.23
54981734--54981797	22	2.8	24	75	17	73	54	1	4	39	1.31
54988413--54988453	21	1.9	21	85	5	55	68	2	0	29	1.03
54988411--54988611	9	21.8	9	67	23	57	63	5	1	29	1.26
54988506--54988538	9	3.8	9	96	4	59	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54988567--54988592	13	2.0	13	100	0	52	76	7	0	15	0.99
54988547--54988614	32	2.1	32	91	0	109	67	8	0	23	1.18
54988546--54988611	19	3.8	19	69	22	63	65	9	0	25	1.22
54991210--54991265	24	2.3	24	84	6	69	51	1	10	35	1.47
54992178--54992362	9	20.6	9	66	17	75	32	2	4	60	1.28
54992297--54992354	25	2.2	25	85	11	73	34	0	3	62	1.12
54993424--54993551	40	3.2	39	75	6	114	36	21	22	19	1.95
54993617--54993769	41	3.8	41	81	2	184	22	20	24	32	1.98
54993612--54993769	82	1.9	81	85	3	219	21	21	25	31	1.98
54994057--54994090	15	2.2	16	94	5	61	20	0	32	47	1.51
54994517--54994589	21	3.3	22	81	12	62	23	1	39	35	1.63
54994536--54994589	23	2.4	22	87	3	72	22	1	44	31	1.63
54994941--54994979	19	2.1	18	85	4	51	76	2	5	15	1.06
54994905--54995057	83	1.9	80	93	4	261	58	4	9	27	1.50
54995018--54995056	16	2.5	15	84	8	51	79	2	5	12	1.00
54999122--54999155	12	2.8	12	86	0	50	47	14	8	29	1.75
54999195--54999306	16	7.2	16	65	15	74	43	23	3	29	1.70
54999198--54999272	29	2.6	29	97	0	141	46	22	2	28	1.65
54999316--54999406	31	3.0	31	72	15	100	45	13	3	38	1.60
54999552--54999671	9	14.2	9	77	13	121	47	18	1	32	1.58
54999556--54999671	16	6.9	17	74	16	100	47	18	1	32	1.59
54999552--54999671	25	4.8	25	86	0	177	47	18	1	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54999525--54999671	50	2.9	50	83	4	179	50	17	2	30	1.57
55005192--55005363	66	2.6	65	81	4	193	39	18	27	14	1.89
55005350--55005445	21	4.6	21	82	2	104	34	15	43	6	1.72
55005808--55005920	44	2.6	43	81	1	127	29	17	27	25	1.98
55005788--55006049	43	6.0	43	76	6	233	23	16	29	30	1.96
55005788--55006049	87	3.0	86	84	2	310	23	16	29	30	1.96
55005899--55006083	86	2.1	87	87	1	264	24	17	29	28	1.97
55010606--55010637	16	1.9	17	93	6	57	53	18	9	18	1.71
55010870--55010911	21	2.0	21	86	9	59	47	4	45	2	1.36
55011806--55011831	7	3.7	7	100	0	52	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208