genome.fa.s18.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  109  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35909183--35909297	38	2.9	38	88	5	158	38	14	9	37	1.79
35909504--35909831	44	7.4	44	69	14	137	31	25	16	27	1.96
35909617--35909961	44	7.8	44	66	9	166	30	24	17	27	1.97
35909529--35910316	132	6.0	132	89	2	1217	29	25	17	27	1.98
35909546--35910316	265	2.9	264	92	1	1244	29	25	17	27	1.98
35909529--35910316	397	2.0	396	89	2	1217	29	25	17	27	1.98
35911566--35911609	6	7.7	6	87	12	58	2	0	9	88	0.59
35914737--35914916	85	2.1	85	96	2	335	39	12	19	28	1.88
35915230--35915424	98	2.0	98	94	0	345	36	24	10	28	1.89
35916483--35916566	19	4.4	19	89	0	132	35	14	11	38	1.83
35916460--35916566	38	2.7	38	85	5	133	38	14	10	37	1.80
35920180--35920719	70	7.7	70	79	4	527	23	16	26	33	1.96
35920198--35920722	210	2.5	210	81	2	595	23	16	26	33	1.96
35922674--35922770	30	3.2	30	75	2	106	28	15	26	28	1.96
35924268--35924315	20	2.5	20	82	3	62	27	27	8	37	1.85
35928931--35928955	9	2.8	9	100	0	50	48	0	32	20	1.50
35946185--35946595	188	2.2	189	90	1	655	32	24	12	30	1.92
35947431--35947455	7	3.6	7	100	0	50	76	0	24	0	0.80
35948343--35948368	11	2.4	11	100	0	52	38	0	0	61	0.96
35949923--35949955	17	1.9	17	100	0	66	36	30	12	21	1.90
35957640--35957731	13	7.1	13	80	9	116	36	25	5	32	1.79
35957640--35957731	39	2.4	39	100	0	184	36	25	5	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35964640--35964697	19	3.0	19	85	12	66	44	0	10	44	1.38
35967492--35967554	25	2.5	25	82	5	74	44	17	11	26	1.82
35977411--35978330	458	2.0	459	95	0	1662	24	17	26	32	1.96
35982415--35982513	17	5.7	17	77	3	81	38	29	18	14	1.90
35982414--35982513	34	2.9	33	79	8	110	38	29	18	15	1.90
35987845--35988276	211	2.1	205	85	9	574	30	24	20	24	1.98
35988749--35988791	22	2.0	21	90	4	68	16	2	30	51	1.57
35988872--35988934	21	3.0	22	75	13	69	22	3	30	44	1.68
35989061--35989090	15	2.0	15	93	0	51	63	0	3	33	1.11
35989284--35989321	20	1.9	20	94	0	67	34	0	7	57	1.28
35989819--35989863	19	2.4	19	80	0	54	33	37	2	26	1.69
35995722--35995978	43	6.0	43	78	5	277	29	19	27	23	1.98
35995722--35995958	129	1.8	129	85	1	332	30	19	26	23	1.98
35999219--35999279	17	3.6	16	80	6	59	34	29	16	19	1.94
36001137--36001284	57	2.5	60	82	9	187	22	24	22	30	1.99
36006525--36006566	21	2.0	22	90	4	68	38	26	4	30	1.77
36008595--36008721	42	3.0	42	79	5	123	31	25	16	25	1.96
36014341--36014413	20	3.7	20	75	8	69	31	1	2	64	1.16
36014352--36014430	29	2.8	28	76	5	79	32	1	2	63	1.16
36014340--36014443	27	3.6	30	70	18	87	33	0	1	63	1.12
36014639--36014791	82	1.9	81	86	1	216	34	9	12	43	1.76
36014576--36014811	82	2.9	78	77	11	195	35	11	12	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36014660--36014830	82	2.1	81	80	7	191	35	9	13	40	1.78
36019270--36019324	27	2.1	27	82	3	67	60	9	5	25	1.49
36024256--36024295	19	2.2	18	86	4	53	10	5	7	77	1.11
36025317--36025385	29	2.4	28	76	7	75	46	5	13	34	1.67
36025714--36025759	24	1.9	24	86	0	65	50	4	0	45	1.21
36027807--36027866	28	2.1	28	100	0	120	38	21	20	20	1.94
36030062--36030099	3	12.7	3	100	0	76	34	0	0	65	0.93
36033699--36033763	30	2.2	30	86	5	87	26	0	10	63	1.27
36033969--36034018	23	2.2	23	96	0	91	10	24	12	54	1.67
36035088--36035121	15	2.3	15	100	0	68	38	23	14	23	1.92
36042094--36042128	14	2.5	14	90	0	52	45	5	0	48	1.26
36042297--36042336	21	1.9	21	89	0	62	37	27	5	30	1.78
36050755--36050867	56	2.0	56	83	8	140	29	18	7	44	1.78
36050869--36050893	10	2.5	10	100	0	50	12	20	8	60	1.57
36060869--36061195	41	8.0	41	82	2	370	18	20	30	29	1.97
36060885--36061197	123	2.5	123	86	1	430	19	20	30	29	1.97
36061843--36061871	15	1.9	15	100	0	58	20	0	34	44	1.52
36061916--36061947	15	2.2	15	94	5	57	21	0	40	37	1.54
36061837--36061968	7	18.6	7	72	6	50	21	0	34	43	1.58
36066033--36066273	43	5.6	43	83	2	277	21	14	28	34	1.94
36066033--36066273	87	2.8	85	82	3	277	21	14	28	34	1.94
36067771--36068111	50	6.8	50	86	1	425	21	28	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36072618--36072649	12	2.7	12	95	0	55	12	25	37	25	1.91
36077133--36077165	17	1.9	17	93	0	57	18	9	12	60	1.57
36082812--36082878	21	3.1	22	76	8	66	49	1	5	43	1.36
36082835--36082891	22	2.6	22	83	2	62	52	0	5	42	1.24
36084479--36084573	44	2.2	44	84	7	122	26	23	21	29	1.99
36084554--36085560	50	20.2	50	71	6	626	23	21	22	31	1.98
36084569--36085572	100	10.1	100	88	2	1390	23	21	23	32	1.98
36085600--36085810	44	4.7	45	70	9	164	21	23	26	28	1.99
36085577--36085794	45	4.9	44	71	11	133	20	23	27	28	1.99
36085577--36085810	89	2.6	88	88	2	326	20	23	25	29	1.99
36087916--36087981	31	2.3	29	87	10	91	37	7	16	37	1.77
36087925--36087985	31	2.0	31	96	0	113	39	8	18	34	1.80
36092162--36092204	3	14.0	3	82	4	50	58	0	2	39	1.11
36098697--36098725	6	5.0	6	95	4	51	82	0	0	17	0.66
36098697--36098731	11	3.1	11	88	8	52	80	2	0	17	0.84
36110073--36110134	17	3.7	16	72	10	52	17	20	29	32	1.96
36113095--36113215	36	3.4	36	85	0	134	25	12	34	27	1.92
36114501--36114611	34	3.3	33	80	2	114	22	18	27	30	1.98
36114519--36114611	17	5.5	17	70	10	73	22	19	27	30	1.98
36122248--36122343	21	4.5	21	66	29	60	62	4	3	30	1.29
36122882--36122918	18	2.1	18	85	14	51	78	10	8	2	1.06
36123880--36124161	50	5.7	49	71	5	217	23	22	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36123705--36124223	100	5.2	100	84	4	602	24	23	21	30	1.99
36123847--36124211	50	7.3	50	70	6	211	23	24	23	29	1.99
36125628--36125656	15	2.0	15	93	6	51	13	20	0	65	1.26
36125659--36125694	15	2.4	15	90	0	54	5	22	0	72	1.05
36126166--36126238	10	6.8	10	76	13	56	1	13	4	80	0.92
36126168--36126238	21	3.3	22	80	7	74	1	14	4	80	0.93
36131215--36131275	3	20.0	3	76	15	54	60	6	1	31	1.32
36131289--36131329	14	2.9	14	83	16	50	75	4	0	19	0.98
36131299--36131329	14	2.1	14	94	5	53	77	6	0	16	0.97
36131286--36131329	20	2.2	20	84	8	54	75	4	0	20	0.98
36131852--36131884	17	1.9	17	88	11	50	75	12	9	3	1.14
36156397--36156500	55	1.9	55	85	0	145	11	21	11	55	1.66
36156392--36156511	55	2.2	55	80	3	134	10	22	11	55	1.67
36156475--36156536	25	2.5	25	76	10	72	8	19	16	56	1.64
36156520--36156570	20	2.5	20	87	0	66	7	23	13	54	1.65
36156525--36156602	5	15.6	5	75	0	57	7	19	16	56	1.64
36156508--36156602	10	9.5	10	71	0	55	8	17	16	56	1.64
36159877--36159908	10	3.2	10	95	0	55	9	3	21	65	1.35
36159897--36159942	15	3.1	15	80	0	56	6	13	17	63	1.50
36159885--36159938	25	2.2	25	86	6	74	7	9	18	64	1.45
36164879--36164964	42	2.0	42	97	0	163	23	3	18	54	1.59
36169778--36169844	30	2.2	29	82	10	73	47	2	1	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36170004--36170055	13	4.0	13	82	0	68	36	25	5	32	1.80
36177555--36177591	19	1.9	19	100	0	74	40	10	0	48	1.38
36177669--36177711	18	2.4	18	88	0	59	48	4	0	46	1.22
36179164--36179193	9	3.3	9	100	0	60	63	0	10	26	1.26
36179492--36179548	21	2.7	21	91	0	96	42	8	10	38	1.71
36180057--36180115	25	2.4	23	75	13	55	18	3	3	74	1.10
36180153--36180210	27	2.1	27	84	9	73	27	0	5	67	1.12
36185035--36185118	32	2.6	33	85	9	120	28	1	19	51	1.54
36186200--36186295	46	2.1	46	90	0	147	28	8	21	41	1.82
36186649--36186885	125	1.9	125	92	1	404	29	14	22	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208