genome.fa.s18.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  153  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49695310--49695402	28	3.5	28	79	18	85	35	0	5	59	1.21
49706833--49706881	25	1.9	26	91	4	82	14	18	10	57	1.65
49708133--49708432	44	6.9	44	69	11	168	30	20	21	27	1.98
49708132--49708709	209	2.7	209	85	3	789	29	20	21	28	1.98
49708561--49708714	44	3.6	40	75	10	110	27	20	21	30	1.98
49708694--49708804	43	2.6	43	77	1	123	31	20	22	25	1.98
49710474--49710553	27	2.9	27	79	17	92	32	0	5	62	1.17
49710486--49710550	29	2.2	28	83	10	76	33	0	4	61	1.16
49728727--49728822	31	3.1	31	95	3	174	31	9	13	45	1.75
49729126--49729160	4	9.0	4	87	6	54	25	0	2	71	1.00
49734232--49734326	31	3.1	31	98	0	181	31	9	13	45	1.76
49734635--49734692	29	2.1	27	81	18	66	25	6	0	67	1.16
49739497--49739758	39	6.6	39	87	4	318	25	22	27	24	2.00
49746331--49746380	26	1.9	26	87	0	73	42	6	10	42	1.63
49748453--49748502	26	1.9	26	95	0	91	46	6	10	38	1.62
49750496--49750545	26	1.9	26	100	0	100	44	6	12	38	1.66
49754431--49754478	24	1.9	26	87	8	73	41	8	10	39	1.69
49756525--49756574	26	1.9	26	95	0	91	42	8	12	38	1.71
49758700--49758749	26	1.9	26	95	0	91	42	8	12	38	1.71
49760812--49760861	26	1.9	26	95	0	91	42	8	12	38	1.71
49762922--49762971	26	1.9	26	95	0	91	42	8	12	38	1.71
49765032--49765081	26	1.9	26	95	0	91	42	8	12	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49777220--49777283	22	2.7	22	73	9	56	17	12	28	42	1.85
49779636--49779713	33	2.4	33	82	4	95	48	19	17	14	1.81
49789119--49789174	27	2.1	27	82	0	67	41	16	17	25	1.89
49789158--49789210	26	2.0	27	88	3	81	24	20	22	32	1.98
49794664--49794707	22	2.0	22	86	0	61	56	4	0	38	1.20
49794715--49794753	20	1.9	21	85	15	55	46	0	2	51	1.14
49797516--49797591	13	5.8	13	77	14	84	31	19	3	44	1.69
49802688--49802752	33	2.0	33	93	0	112	35	9	29	26	1.87
49816338--49816389	23	2.3	22	75	21	54	9	23	1	65	1.32
49819087--49819821	370	2.0	370	90	1	1168	35	11	21	32	1.89
49821296--49821346	24	2.1	24	100	0	102	52	11	3	31	1.56
49824403--49824449	13	3.8	12	89	10	76	23	10	0	65	1.23
49824403--49824452	26	2.0	25	96	4	91	26	12	0	62	1.30
49827511--49827550	18	2.2	18	86	4	53	12	27	0	60	1.33
49828605--49828652	13	3.8	12	86	13	69	22	10	0	66	1.22
49828605--49828655	26	2.0	26	96	0	93	25	11	0	62	1.29
49830993--49831025	16	2.1	16	88	5	50	9	3	3	84	0.82
49831704--49831731	12	2.3	12	100	0	56	64	14	0	21	1.29
49832599--49832642	14	3.2	13	90	3	61	34	9	9	47	1.67
49835437--49835506	35	2.0	35	88	0	104	31	28	12	27	1.93
49835775--49835809	16	2.1	18	89	10	56	40	17	5	37	1.73
49844530--49844791	39	6.7	40	87	7	319	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49865561--49865609	24	2.2	24	85	10	68	36	10	6	46	1.63
49866311--49866377	32	2.1	32	85	0	89	19	7	32	40	1.79
49866635--49866674	20	2.0	21	90	5	64	45	20	2	32	1.64
49873417--49873473	28	2.0	29	82	3	71	50	3	17	28	1.62
49873986--49874114	43	3.0	43	74	17	142	23	17	27	31	1.97
49873986--49874106	42	2.8	42	79	13	131	23	19	26	30	1.98
49874948--49875051	24	4.4	23	73	4	91	25	19	13	41	1.88
49874964--49875048	24	3.6	24	75	3	100	25	20	14	40	1.90
49874948--49875051	47	2.2	47	98	0	199	25	19	13	41	1.88
49875015--49875088	36	2.1	36	97	0	139	21	18	18	40	1.91
49874968--49875124	83	1.9	83	88	2	235	24	17	17	40	1.91
49877852--49877883	16	2.0	16	100	0	64	56	25	6	12	1.59
49878344--49878375	11	2.9	11	90	0	55	9	6	28	56	1.55
49880953--49880977	13	1.9	13	100	0	50	40	28	8	24	1.83
49884227--49884276	25	2.0	26	88	4	75	34	16	12	38	1.85
49896649--49896716	4	17.0	4	93	0	118	27	25	0	47	1.53
49896714--49896739	2	13.0	2	100	0	52	50	0	0	50	1.00
49896739--49896771	2	16.5	2	93	0	57	54	0	45	0	0.99
49901855--49902036	49	3.7	49	77	5	197	23	15	31	30	1.95
49901854--49902038	98	1.9	98	85	2	255	23	15	30	29	1.96
49903612--49903908	50	5.8	50	81	3	283	23	28	20	26	1.99
49907102--49907134	9	3.7	9	91	0	57	24	12	24	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49907100--49907134	18	1.9	18	100	0	70	28	11	22	37	1.89
49907271--49907329	29	2.0	29	93	0	100	20	38	1	38	1.63
49907372--49907429	29	2.0	30	89	3	91	20	43	0	36	1.52
49911101--49911139	7	5.6	7	96	0	69	12	15	0	71	1.14
49911110--49911244	58	2.3	58	87	5	184	25	20	6	47	1.74
49911112--49911221	57	2.0	54	87	5	132	28	19	7	45	1.76
49913206--49913262	28	2.0	28	100	0	114	35	7	3	54	1.45
49919370--49919409	16	2.5	16	83	0	53	37	5	0	57	1.21
49927810--49927938	54	2.4	54	83	5	163	20	28	24	26	1.99
49929718--49929797	42	1.9	42	86	0	115	18	31	23	26	1.98
49929697--49929813	42	2.8	39	78	7	108	17	33	23	25	1.96
49929824--49930026	104	1.9	105	85	4	275	22	30	23	23	1.99
49931496--49931603	42	2.6	41	85	8	137	17	34	22	25	1.96
49933475--49933522	20	2.4	20	86	6	62	31	10	18	39	1.85
49942167--49942243	40	1.9	41	84	7	104	45	1	7	45	1.40
49942253--49942306	4	12.8	4	78	18	56	72	3	20	3	1.16
49943159--49943293	40	3.4	40	75	9	134	26	17	23	31	1.97
49943159--49943263	37	2.7	38	82	5	122	25	17	23	33	1.96
49943448--49943502	15	3.6	16	77	20	55	32	1	23	41	1.65
49946410--49946476	20	3.3	20	73	19	59	47	0	1	50	1.10
49947516--49947626	23	5.0	23	79	7	97	18	20	23	36	1.95
49947528--49947625	21	4.5	21	80	8	90	16	20	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49947527--49947625	44	2.3	41	77	10	99	16	20	25	38	1.92
49959180--49959580	31	13.0	31	72	11	236	43	15	7	33	1.75
49959200--49959602	61	6.6	59	71	14	207	43	15	7	33	1.75
49959200--49959591	92	4.3	92	80	3	407	42	15	7	33	1.76
49963898--49964094	33	5.4	33	67	21	124	36	27	15	20	1.93
49963888--49964098	75	2.8	76	90	2	334	34	27	16	21	1.95
49964073--49964125	27	2.0	27	92	0	88	28	30	24	16	1.97
49963998--49964198	102	2.0	102	89	2	305	33	26	18	21	1.97
49978074--49978206	61	2.1	63	87	2	189	28	19	6	45	1.76
49978751--49978813	33	1.9	33	100	0	126	33	23	7	34	1.84
49994165--49994533	125	3.0	125	94	0	621	28	15	23	32	1.95
49997711--49997798	45	2.0	45	90	4	142	51	11	0	37	1.38
50000097--50000170	22	3.3	22	87	9	98	40	0	35	24	1.55
50000113--50000170	11	5.2	11	93	2	98	43	0	36	20	1.52
50000095--50000171	33	2.3	33	80	14	95	41	0	33	24	1.55
50012669--50012711	21	2.0	21	86	8	61	60	2	0	37	1.10
50012680--50012740	11	6.0	11	72	14	51	59	1	0	39	1.08
50012687--50012741	28	1.9	29	89	10	87	58	1	0	40	1.09
50013102--50013140	19	2.1	19	90	9	62	35	0	5	58	1.20
50013106--50013147	19	2.2	19	87	8	59	40	0	2	57	1.12
50015738--50015859	50	2.5	50	97	1	228	43	9	2	44	1.50
50018147--50018244	11	9.3	11	65	16	55	45	2	29	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50019678--50019732	21	2.6	21	85	0	74	7	45	14	32	1.72
50019717--50019859	66	2.2	66	84	5	182	13	26	18	41	1.88
50025301--50025406	34	3.2	34	67	17	105	33	8	13	45	1.73
50025293--50025425	65	2.0	65	100	0	266	35	7	13	43	1.72
50027850--50027880	16	1.9	16	93	0	53	32	6	25	35	1.82
50028292--50030097	795	2.2	798	91	4	2886	38	16	9	35	1.82
50030710--50030858	40	3.7	38	76	12	138	18	20	22	38	1.93
50030710--50030858	79	1.9	79	82	10	187	18	20	22	38	1.93
50033899--50033950	17	2.7	19	71	17	54	38	19	17	25	1.93
50035377--50035425	20	2.3	21	75	6	55	48	2	2	46	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208