genome.fa.s18.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  84  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29428144--29428197	20	2.7	20	85	5	65	35	7	1	55	1.39
29428600--29428637	18	2.1	18	90	0	58	31	0	5	63	1.17
29436684--29436742	5	11.8	5	75	13	59	74	0	1	23	0.91
29443237--29443270	17	2.0	17	88	0	50	14	26	2	55	1.53
29449382--29449426	21	2.1	21	87	0	63	20	4	20	55	1.60
29450133--29450171	18	2.3	18	86	8	55	43	12	5	38	1.65
29450328--29450358	15	2.1	15	100	0	62	22	32	6	38	1.80
29453720--29453749	15	2.0	15	93	0	51	23	46	6	23	1.75
29454491--29454529	18	2.3	18	86	8	55	43	12	5	38	1.65
29454686--29454716	15	2.1	15	100	0	62	22	32	6	38	1.80
29464246--29464314	33	2.1	33	94	5	122	42	37	7	13	1.71
29471284--29471315	15	2.1	15	94	0	55	31	15	0	53	1.43
29471459--29471497	14	2.8	14	84	0	51	35	12	23	28	1.91
29472062--29472097	18	1.9	18	88	5	54	58	2	0	38	1.13
29476691--29476795	27	3.9	27	82	0	129	23	29	13	33	1.93
29476660--29476778	54	2.2	54	81	3	150	22	30	15	31	1.95
29480730--29480769	21	1.9	21	84	0	53	55	2	10	32	1.47
29480820--29480865	18	2.7	16	83	12	56	54	2	6	36	1.39
29484217--29484259	22	2.0	22	90	0	68	9	13	27	48	1.73
29484331--29484684	43	8.4	42	86	6	439	31	23	20	24	1.98
29484331--29484685	83	4.2	84	85	6	441	31	23	20	24	1.98
29485116--29485184	21	3.3	21	89	0	102	1	43	20	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29490638--29490698	16	3.7	16	78	8	68	31	1	21	45	1.61
29490638--29490736	9	11.6	9	73	18	77	29	3	20	47	1.65
29490649--29490736	16	5.1	17	72	12	65	28	3	20	47	1.66
29490638--29490723	25	3.4	25	77	6	86	29	3	20	46	1.67
29490803--29490853	12	4.6	11	90	9	70	29	0	15	54	1.41
29490803--29490871	24	3.0	24	85	8	83	26	2	17	53	1.57
29490810--29490856	12	4.1	12	89	5	71	29	0	17	53	1.44
29491153--29491245	34	2.6	36	81	5	100	55	2	5	36	1.35
29492844--29492943	45	2.2	44	84	3	128	36	10	32	22	1.87
29494116--29494174	7	8.3	7	83	3	64	44	42	0	13	1.44
29494541--29494918	115	3.3	114	82	4	499	29	21	19	29	1.97
29501233--29501312	30	2.7	30	90	0	124	48	6	18	26	1.71
29501237--29501290	15	3.6	15	73	9	56	48	7	16	27	1.73
29510523--29510553	3	10.7	3	93	6	55	70	0	0	29	0.87
29510464--29511615	571	2.0	581	87	3	1650	41	26	9	21	1.84
29513132--29513158	12	2.2	12	100	0	54	74	0	7	18	1.05
29514927--29514984	13	4.5	13	77	16	66	39	20	6	32	1.79
29517648--29517701	26	2.1	26	86	13	76	40	12	18	27	1.87
29523155--29523190	18	1.9	19	88	5	56	8	0	33	58	1.28
29524984--29525073	42	2.2	42	97	2	173	33	23	7	35	1.84
29528164--29528211	20	2.5	20	76	10	55	39	10	2	47	1.49
29529256--29529323	30	2.3	29	90	7	111	42	7	5	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29529263--29529323	30	2.1	30	96	3	115	42	6	6	44	1.56
29531752--29531858	26	4.1	26	87	2	144	39	22	18	19	1.93
29534389--29534525	65	2.1	65	84	6	181	21	22	26	29	1.99
29535157--29535201	6	7.7	6	80	19	51	80	0	15	4	0.87
29535151--29535201	17	3.1	16	83	8	66	78	0	15	5	0.93
29535157--29535201	17	2.6	17	89	10	74	80	0	15	4	0.87
29541962--29542002	21	2.0	21	85	0	55	21	2	19	56	1.54
29543756--29543796	18	2.3	18	86	0	55	60	12	2	24	1.43
29544044--29544080	19	1.9	19	94	0	65	43	2	10	43	1.53
29546176--29546234	3	19.7	3	92	0	100	37	0	0	62	0.95
29546514--29546550	14	2.6	14	86	0	56	43	16	0	40	1.48
29555960--29556008	20	2.5	20	83	9	57	67	2	18	12	1.32
29556911--29556944	6	5.7	6	100	0	68	70	0	14	14	1.17
29558162--29558410	129	1.9	129	92	1	419	30	21	25	22	1.99
29558166--29558410	43	5.7	43	92	0	375	31	21	24	22	1.99
29558572--29558934	44	8.3	44	73	8	121	30	18	24	26	1.98
29564934--29564982	20	2.5	20	83	9	57	67	2	18	12	1.32
29565884--29565917	6	5.7	6	100	0	68	70	0	14	14	1.17
29567136--29567384	129	1.9	129	92	1	419	30	21	25	22	1.99
29567140--29567384	43	5.7	43	92	0	375	31	21	24	22	1.99
29567546--29567908	44	8.3	44	73	8	121	30	18	24	26	1.98
29577349--29577420	34	2.1	35	89	2	110	22	9	16	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29601566--29601817	43	5.9	42	79	5	220	25	24	21	29	1.99
29601571--29601820	130	1.9	127	82	5	306	23	24	21	31	1.98
29603937--29604009	25	2.9	24	71	15	67	32	1	20	45	1.60
29604029--29604191	16	10.0	16	64	23	56	33	1	18	46	1.60
29604089--29604501	9	47.4	9	65	18	128	34	2	17	45	1.63
29604115--29604495	25	16.4	25	70	14	205	33	2	17	45	1.64
29604091--29604325	113	2.1	112	87	5	334	33	2	18	45	1.65
29604195--29604255	20	3.1	20	81	9	72	36	0	14	49	1.44
29604355--29604424	21	3.1	21	73	15	77	34	0	12	52	1.40
29604518--29604600	42	2.0	42	83	9	107	51	1	3	43	1.26
29604562--29604606	23	2.0	22	86	4	63	46	0	6	46	1.29
29604555--29604615	30	2.0	30	84	6	79	47	0	6	45	1.28
29606662--29606711	22	2.3	22	100	0	100	44	18	16	22	1.87
29607523--29607714	105	1.9	105	89	5	302	28	10	12	48	1.73
29607657--29607696	21	1.9	21	94	0	71	27	0	0	72	0.85
29607505--29607725	105	2.1	102	83	4	291	28	12	12	45	1.79
29607667--29607939	137	2.0	137	88	4	408	25	14	15	44	1.84
29608263--29608304	15	2.9	15	82	3	50	33	45	4	16	1.69
29608138--29608718	296	2.0	289	82	9	707	40	27	3	28	1.71
29608740--29609400	115	5.8	114	85	2	857	28	26	21	24	1.99
29608732--29609400	229	2.9	228	88	2	952	28	26	21	24	1.99
29625273--29625395	44	3.0	42	67	9	108	31	22	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29632056--29632100	23	2.0	23	91	8	74	22	13	11	53	1.71
29634360--29634425	21	3.1	22	74	8	66	21	31	19	27	1.97
29636867--29637011	72	2.0	70	82	5	175	26	21	21	30	1.98
29641177--29641208	15	2.1	16	88	11	50	15	0	6	78	0.95
29653186--29653263	40	2.0	38	80	9	86	43	1	1	53	1.16
29656398--29656424	6	4.5	6	100	0	54	33	0	0	66	0.92
29658397--29658457	29	2.1	29	90	0	95	14	16	29	39	1.88
29674069--29674175	30	3.4	30	78	15	108	28	16	26	28	1.97
29674072--29674251	66	2.7	66	82	3	220	27	15	25	31	1.95
29694369--29694424	27	2.1	27	86	0	76	62	0	30	7	1.22
29694417--29694456	18	2.2	18	86	0	53	65	2	25	7	1.32
29700427--29700489	30	2.1	31	90	3	101	34	0	36	28	1.58
29702384--29702478	42	2.2	43	83	10	124	30	16	21	31	1.95
29702384--29702496	43	2.7	42	79	9	131	28	15	23	31	1.96
29703280--29703562	22	12.9	22	81	3	273	27	8	20	43	1.81
29703280--29703562	66	4.3	67	84	6	301	27	8	20	43	1.81
29703278--29703562	88	3.2	88	86	3	369	27	8	20	43	1.81
29703453--29703556	33	3.2	33	70	15	97	28	5	20	45	1.74
29711084--29711160	38	2.0	38	92	0	127	28	1	40	29	1.65
29721449--29721674	43	5.3	41	83	2	209	30	21	23	24	1.99
29721470--29721676	85	2.4	84	84	4	256	30	21	23	25	1.99
29722121--29722184	21	3.0	21	79	0	74	4	43	17	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29727659--29728382	9	80.1	9	69	22	223	38	0	13	47	1.48
29727664--29727783	16	7.9	16	67	19	87	35	2	17	45	1.62
29727678--29727832	25	6.2	25	75	11	120	38	1	15	44	1.58
29727736--29728014	34	8.5	34	75	13	155	38	0	15	45	1.49
29727839--29727887	16	3.1	16	100	0	98	30	0	24	44	1.54
29727735--29728061	25	12.6	26	73	19	147	38	0	15	45	1.51
29727766--29728402	31	20.5	31	81	12	690	39	0	12	48	1.43
29727911--29728382	22	23.3	20	67	25	157	38	0	11	49	1.42
29727998--29728030	16	2.1	16	100	0	66	30	0	24	45	1.53
29730110--29730162	24	2.2	25	82	3	63	24	3	43	28	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208