genome.fa.s18.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  172  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55011804--55011838	14	2.5	14	80	0	52	60	0	0	40	0.97
55016874--55016945	37	1.9	38	86	8	103	50	6	26	16	1.71
55028583--55028795	41	5.2	41	74	2	178	24	36	18	20	1.95
55028583--55028828	41	6.1	41	73	4	176	23	35	19	21	1.96
55031570--55031619	26	1.9	26	95	0	91	16	22	32	30	1.95
55031598--55031833	33	6.8	33	70	23	135	21	20	26	31	1.98
55031594--55031769	75	2.4	74	90	2	271	21	18	27	32	1.97
55039012--55039184	41	4.3	41	73	2	152	24	35	19	21	1.96
55039156--55039213	24	2.4	24	88	0	80	24	37	18	18	1.94
55049555--55049727	41	4.3	41	71	5	138	24	36	17	20	1.95
55052499--55052649	33	4.5	33	74	22	129	19	19	27	33	1.96
55052522--55052695	74	2.4	73	88	5	260	20	18	28	32	1.96
55063966--55064003	19	2.0	19	100	0	76	26	26	21	26	1.99
55069228--55069257	15	2.0	15	100	0	60	46	20	26	6	1.75
55075726--55075757	15	2.1	15	94	0	55	6	9	12	71	1.29
55075708--55075762	20	2.8	20	88	0	74	7	12	12	67	1.42
55075942--55076002	15	4.3	14	79	10	61	36	39	8	16	1.78
55077076--55077125	3	16.7	3	100	0	100	32	0	0	68	0.90
55077278--55077307	15	1.9	15	93	6	51	36	0	0	63	0.95
55079562--55079588	8	3.4	8	100	0	54	25	0	0	74	0.83
55079928--55079966	21	1.9	20	94	5	69	38	0	0	61	0.96
55082819--55082911	20	4.7	20	68	2	71	37	13	8	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55082877--55082919	20	2.2	20	87	4	61	44	6	6	41	1.58
55082983--55083030	20	2.4	20	80	13	55	35	6	8	50	1.58
55083000--55083072	20	3.6	21	78	10	64	36	10	8	43	1.70
55083218--55083312	20	4.8	20	68	17	54	33	9	14	42	1.78
55083357--55083499	20	7.1	20	72	7	92	38	11	9	40	1.74
55083357--55083500	40	3.6	39	82	5	135	38	11	9	40	1.74
55083564--55083614	20	2.5	20	80	0	57	33	11	15	39	1.84
55086159--55086222	32	2.0	32	100	0	128	34	12	15	37	1.85
55092093--55092150	22	2.6	23	78	10	66	37	5	3	53	1.40
55092708--55092850	42	3.4	42	79	9	157	49	16	20	13	1.79
55096865--55096907	19	2.2	20	87	4	61	55	0	4	39	1.20
55096899--55096988	33	2.9	31	88	11	123	46	0	0	53	1.00
55096909--55097002	33	3.1	29	80	11	84	44	1	0	54	1.07
55097023--55097092	29	2.3	29	85	4	86	22	14	15	47	1.82
55097869--55097974	17	5.9	17	79	16	108	45	0	0	52	1.13
55097876--55097968	9	10.3	9	70	19	61	44	1	1	53	1.14
55097866--55097974	9	11.9	10	70	20	55	44	0	0	53	1.13
55097994--55098056	17	3.6	16	76	16	63	50	0	1	47	1.10
55098007--55098053	9	5.2	9	77	10	51	57	0	2	40	1.11
55098007--55098046	19	2.1	19	85	0	53	60	0	2	37	1.11
55098004--55098206	81	2.5	79	78	15	213	52	3	3	39	1.38
55105706--55105735	13	2.3	13	100	0	60	70	10	0	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55115039--55115066	6	4.7	6	100	0	56	17	0	0	82	0.68
55118731--55118990	54	4.8	54	80	7	197	30	23	29	16	1.96
55118820--55119029	57	3.7	57	85	3	257	27	26	31	14	1.95
55118792--55118990	27	7.3	27	88	3	281	28	25	30	16	1.96
55119737--55119805	21	3.5	19	79	11	68	28	1	5	63	1.26
55120536--55120583	22	2.2	22	88	0	69	29	25	0	45	1.53
55124101--55124452	126	2.8	125	92	3	575	32	22	16	28	1.95
55125273--55125303	16	1.9	16	93	0	53	16	3	6	74	1.16
55125519--55125544	9	2.9	9	100	0	52	57	0	0	42	0.98
55126348--55126393	24	1.9	24	82	8	58	47	0	8	43	1.34
55126797--55126853	24	2.4	24	77	8	62	26	10	7	56	1.59
55128078--55128176	23	4.3	23	88	0	144	31	24	22	22	1.98
55128078--55128175	46	2.1	46	92	0	160	31	24	22	21	1.98
55129641--55129700	22	2.6	23	76	12	61	40	5	0	55	1.22
55133409--55133447	16	2.4	16	86	0	60	61	2	0	35	1.10
55133897--55133939	20	2.1	21	91	4	70	51	9	4	34	1.55
55137093--55137132	20	2.0	20	90	0	62	50	12	10	27	1.72
55137080--55137147	34	2.0	35	91	2	111	45	13	8	32	1.74
55137271--55137304	16	2.1	16	88	0	50	32	0	2	64	1.08
55143162--55143208	24	2.0	24	91	0	76	36	6	0	57	1.24
55143321--55143464	4	36.0	4	75	18	88	68	0	31	0	0.90
55143321--55143471	26	6.2	25	70	23	92	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55143322--55143499	43	4.2	42	80	16	172	68	0	31	0	0.90
55143354--55143524	49	3.4	48	78	12	143	69	0	30	0	0.89
55143311--55143500	83	2.4	81	85	9	245	67	0	32	0	0.91
55143322--55143528	83	2.6	81	82	11	241	69	0	30	0	0.89
55143315--55143528	62	3.5	60	71	10	164	67	0	32	0	0.91
55149114--55149158	18	2.5	18	88	0	72	15	48	6	28	1.70
55149838--55149958	63	1.9	63	85	8	165	44	11	4	38	1.62
55150008--55150036	3	9.7	3	100	0	58	68	31	0	0	0.89
55150381--55150425	22	2.0	22	95	0	81	53	0	8	37	1.32
55151188--55151229	10	4.2	10	80	19	52	66	0	33	0	0.92
55151187--55151229	14	3.1	14	81	18	54	65	0	34	0	0.93
55151258--55151330	11	6.5	11	72	12	51	72	0	24	2	0.98
55151275--55151317	6	7.2	6	80	19	54	65	0	32	2	1.06
55153171--55153231	26	2.4	26	81	10	72	60	9	6	22	1.51
55160031--55160116	42	2.0	42	90	0	136	31	20	23	24	1.98
55159977--55160185	111	1.9	111	83	2	276	32	23	22	22	1.98
55160073--55160393	69	4.7	69	77	1	302	33	22	22	21	1.97
55160088--55160393	138	2.2	138	81	2	346	33	23	21	21	1.97
55177659--55177756	20	4.9	20	82	0	106	12	28	21	37	1.89
55177673--55177756	40	2.1	40	97	0	159	9	29	22	38	1.86
55180425--55180471	24	2.0	24	83	8	60	29	6	21	42	1.77
55180623--55180839	33	6.5	33	79	7	163	29	6	21	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55180620--55180839	17	13.2	17	75	7	173	28	6	21	43	1.77
55180620--55180830	50	4.2	50	77	6	187	29	6	21	43	1.77
55180615--55180829	117	1.8	117	90	0	349	29	6	21	43	1.76
55180945--55180999	26	2.1	26	89	0	83	25	16	25	32	1.96
55181080--55181152	36	2.0	36	94	0	128	34	23	17	24	1.96
55191339--55191378	3	13.3	3	83	0	53	5	2	30	62	1.29
55196204--55196229	7	3.7	7	100	0	52	73	0	0	26	0.84
55199818--55199853	19	1.9	19	88	5	56	41	5	5	47	1.50
55199840--55199896	20	2.9	20	81	2	71	35	0	7	57	1.26
55222864--55222908	23	2.0	23	86	8	65	20	4	6	68	1.29
55232536--55232603	32	2.1	34	86	5	95	38	2	1	57	1.23
55236113--55236213	43	2.3	43	94	0	175	17	16	26	38	1.92
55236113--55236262	43	3.5	43	83	5	151	20	17	25	36	1.94
55238482--55238521	22	2.0	21	85	14	57	27	12	20	40	1.88
55238581--55238640	22	2.7	22	73	2	66	35	15	20	30	1.93
55252940--55252984	23	2.0	23	86	8	65	20	4	6	68	1.29
55256579--55256603	11	2.3	11	100	0	50	80	0	20	0	0.72
55264771--55264811	21	2.0	21	85	9	57	53	0	7	39	1.29
55266073--55266140	10	7.4	9	72	11	50	32	2	1	63	1.18
55266061--55266140	19	4.3	19	77	15	87	32	3	2	61	1.27
55266719--55266757	12	3.1	12	85	7	51	61	0	0	38	0.96
55267445--55267492	8	5.5	8	77	18	51	39	2	0	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55271077--55271134	19	2.7	22	84	10	68	36	8	17	37	1.80
55271090--55271147	23	2.7	23	78	7	59	37	5	17	39	1.72
55271230--55271262	15	2.2	15	100	0	66	36	21	6	36	1.78
55272794--55272844	16	3.2	16	85	0	75	27	19	15	37	1.92
55277998--55278518	132	4.0	132	84	2	663	30	18	23	26	1.98
55278370--55278468	44	2.2	45	76	5	103	29	18	22	30	1.97
55277996--55278518	262	2.0	264	86	3	741	30	18	23	26	1.98
55278650--55278765	44	2.6	44	79	5	153	32	18	21	26	1.97
55278650--55278782	44	3.0	43	77	8	142	32	21	19	27	1.97
55278900--55279000	51	2.0	51	88	0	148	31	15	22	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208