genome.fa.s18.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  73  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26627628--26627653	13	2.0	13	100	0	52	38	0	0	61	0.96
26634530--26634569	20	2.0	20	85	9	55	55	25	17	2	1.55
26634703--26634728	13	2.0	13	100	0	52	15	0	7	76	0.99
26637864--26637907	19	2.3	20	84	7	56	27	22	11	38	1.88
26642749--26642975	44	5.2	44	64	10	149	28	23	22	25	2.00
26642793--26643019	44	5.2	44	66	12	169	26	21	24	27	1.99
26642745--26643172	88	4.9	88	91	2	573	29	22	22	25	1.99
26643356--26643770	44	9.7	42	70	8	257	31	21	21	25	1.98
26643524--26643816	87	3.4	87	94	2	497	30	21	22	24	1.99
26643352--26643816	174	2.7	170	83	7	557	31	21	21	25	1.98
26643530--26643754	43	5.2	43	72	10	224	31	24	20	24	1.98
26644598--26644637	20	2.0	20	85	9	55	55	25	17	2	1.55
26644772--26644797	13	2.0	13	100	0	52	15	0	7	76	0.99
26645538--26645572	3	11.7	3	100	0	70	31	0	0	68	0.90
26651041--26651105	11	6.0	11	75	15	64	55	1	1	41	1.18
26651075--26651106	6	5.5	6	92	7	57	53	0	0	46	1.00
26651041--26651105	23	3.0	22	73	10	64	55	1	1	41	1.18
26651500--26651606	52	2.1	50	87	3	151	47	5	6	40	1.53
26652505--26652529	12	2.1	12	100	0	50	56	0	0	44	0.99
26658016--26658052	20	1.9	19	89	10	58	54	5	5	35	1.47
26659709--26659763	27	2.0	28	83	13	71	50	3	7	38	1.48
26660420--26660458	18	2.1	19	85	4	53	76	0	7	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26663618--26663661	19	2.3	19	88	7	63	61	2	4	31	1.28
26663797--26663845	15	3.1	15	76	5	53	67	4	6	22	1.30
26665359--26665398	20	2.0	20	90	5	62	25	0	5	70	1.08
26665359--26665398	21	1.9	22	90	10	66	25	0	5	70	1.08
26665378--26665451	25	2.8	27	82	10	73	31	0	5	63	1.17
26665378--26665451	28	2.8	26	80	13	71	31	0	5	63	1.17
26673554--26673736	41	4.5	41	84	2	172	20	29	20	29	1.98
26673595--26673753	41	3.9	41	85	3	212	20	29	22	27	1.98
26676176--26676214	18	2.2	18	85	0	51	53	2	0	43	1.14
26677527--26677578	22	2.2	24	86	6	72	65	7	3	23	1.35
26677724--26677842	29	4.1	28	79	13	125	32	18	5	43	1.72
26678092--26678141	10	5.2	10	80	7	59	70	0	30	0	0.88
26678095--26678137	19	2.3	19	88	11	63	69	0	30	0	0.88
26678403--26678434	17	1.9	16	93	6	55	65	18	15	0	1.27
26678529--26678619	23	4.1	23	80	8	100	78	1	20	0	0.82
26678546--26678615	8	8.8	8	78	12	72	81	0	18	0	0.69
26678544--26678617	15	4.9	15	83	3	96	81	0	18	0	0.70
26678529--26678620	38	2.4	39	83	7	109	77	1	21	0	0.84
26679158--26679200	22	2.0	22	86	8	63	53	16	4	25	1.62
26679192--26679358	17	9.5	17	77	10	158	29	13	10	47	1.75
26679192--26679358	35	4.8	34	79	8	167	29	13	10	47	1.75
26687822--26688496	81	8.3	81	89	6	1001	28	17	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26687841--26688454	161	3.8	161	92	3	1050	28	17	20	33	1.95
26687839--26688451	329	1.9	327	97	0	1154	28	17	20	33	1.95
26688670--26688769	29	3.4	29	90	1	155	34	18	6	42	1.74
26689041--26689090	10	5.2	10	78	7	50	70	0	28	2	0.99
26689044--26689086	19	2.4	17	84	11	50	69	0	27	2	1.00
26689156--26689223	3	22.3	3	93	3	118	69	0	30	0	0.89
26689334--26689394	18	3.4	18	76	10	63	75	14	4	4	1.14
26689334--26689411	18	4.5	17	73	12	61	71	16	6	5	1.25
26689539--26689630	15	6.4	14	81	7	105	80	0	19	0	0.71
26689539--26689630	7	12.9	7	79	8	105	80	0	19	0	0.71
26689537--26689633	8	12.2	8	78	10	85	79	0	20	0	0.73
26689539--26689630	29	3.2	29	83	4	107	80	0	19	0	0.71
26689541--26689628	42	2.1	42	85	8	117	79	0	20	0	0.73
26690171--26690212	21	2.1	21	86	8	61	52	16	4	26	1.63
26690203--26690372	18	9.6	18	78	9	188	28	12	10	48	1.74
26690208--26690372	35	4.7	35	84	2	206	29	12	10	47	1.75
26690333--26690459	35	3.4	37	71	17	111	35	10	11	42	1.76
26690238--26690462	70	3.1	70	78	15	194	32	12	11	44	1.77
26704325--26704377	25	2.2	25	80	12	58	30	11	1	56	1.45
26704621--26704653	14	2.4	14	94	0	57	45	6	0	48	1.27
26704817--26705164	175	2.0	175	100	0	696	29	15	17	37	1.91
26706084--26706517	114	3.8	113	92	3	685	33	14	15	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26706624--26706655	16	2.1	15	94	5	55	0	15	0	84	0.63
26707029--26707203	84	2.1	84	81	13	204	46	1	3	49	1.26
26707099--26707160	31	2.0	30	84	9	81	43	0	6	50	1.28
26708220--26708249	5	6.0	5	96	0	51	0	23	60	16	1.36
26709060--26709101	21	2.0	20	86	4	57	38	2	4	54	1.34
26711363--26711487	41	3.0	41	89	2	189	17	18	27	36	1.93
26711363--26711530	82	2.0	82	81	10	191	19	19	25	35	1.95
26711919--26711988	16	4.4	16	67	16	56	27	1	21	50	1.57
26711921--26712001	23	3.5	23	72	22	80	23	1	24	50	1.56
26716130--26716197	21	3.2	21	85	0	91	35	16	42	5	1.72
26721713--26721748	18	1.9	19	88	5	56	50	0	5	44	1.25
26728802--26728857	29	1.9	29	85	0	76	58	3	0	37	1.15
26728784--26728852	21	3.4	21	70	9	63	60	4	0	34	1.16
26741296--26741344	21	2.5	19	80	9	53	53	2	4	40	1.32
26746376--26746410	17	2.0	18	88	5	54	57	0	11	31	1.34
26751251--26751360	45	2.6	41	77	9	107	31	5	29	33	1.80
26751506--26751540	18	2.0	17	88	5	52	54	0	0	45	0.99
26751393--26751708	156	2.0	157	96	0	580	43	3	5	47	1.42
26751642--26751683	15	2.7	16	82	14	52	52	2	0	45	1.13
26751651--26751692	15	2.9	15	82	10	52	52	0	0	47	1.00
26751677--26751864	61	3.1	60	66	19	165	47	6	2	42	1.44
26751645--26751930	120	2.4	121	92	3	472	48	5	3	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26751761--26751812	15	3.6	15	80	12	56	53	1	0	44	1.11
26751978--26752025	26	1.9	25	84	16	64	52	2	0	45	1.12
26751953--26752161	92	2.3	91	84	5	260	46	3	3	46	1.35
26756982--26757008	13	2.1	13	100	0	54	37	0	7	55	1.28
26763671--26763716	20	2.4	18	85	7	56	30	0	0	69	0.89
26768660--26768709	19	2.5	20	80	9	57	42	0	4	54	1.19
26768658--26768707	22	2.3	21	83	13	57	42	0	4	54	1.19
26768791--26768852	28	2.1	28	85	5	79	40	3	4	51	1.39
26768961--26768999	20	2.0	20	95	5	71	51	0	5	43	1.24
26769760--26769858	36	2.6	37	78	9	101	38	1	28	32	1.64
26770804--26770839	18	2.0	18	94	0	63	52	0	13	33	1.41
26771222--26771270	18	2.6	18	78	18	55	36	2	0	61	1.08
26774338--26774362	3	8.3	3	100	0	50	32	0	0	68	0.90
26776408--26776458	13	4.1	13	75	7	52	35	1	1	60	1.19
26780546--26780570	7	3.6	7	100	0	50	72	0	12	16	1.13
26781169--26781211	22	2.0	21	86	4	59	51	2	6	39	1.42
26782488--26782526	17	2.3	17	86	0	51	2	20	7	69	1.26
26782529--26782578	12	4.2	12	78	19	50	0	56	0	44	0.99
26782529--26782578	18	2.8	18	84	0	64	0	56	0	44	0.99
26783515--26783553	20	2.0	20	89	0	60	48	12	10	28	1.74
26783537--26783576	14	2.9	14	84	0	53	42	17	7	32	1.77
26783810--26783848	18	2.2	18	95	4	71	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26783845--26783869	13	1.9	13	100	0	50	52	0	0	48	1.00
26784012--26784066	21	2.6	21	85	8	76	27	38	7	27	1.83
26784162--26784187	7	3.7	7	100	0	52	76	0	0	23	0.78
26786020--26786356	124	2.7	125	94	1	597	29	14	22	32	1.94
26789466--26789490	10	2.5	10	100	0	50	48	0	8	44	1.32
26789479--26789613	56	2.4	56	77	10	150	46	8	10	34	1.68
26789585--26789641	26	2.2	26	96	3	107	61	7	7	24	1.47
26789639--26790023	28	13.4	27	85	8	437	28	0	22	48	1.54
26789639--26790030	113	3.4	113	87	5	554	27	0	23	48	1.55
26789639--26790030	85	4.6	85	87	5	529	27	0	23	48	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208