genome.fa.s18.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  88  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30628587--30628631	14	3.1	15	81	18	51	40	0	6	53	1.27
30628773--30628858	44	2.0	43	90	2	136	46	5	8	39	1.58
30646897--30646922	4	6.5	4	100	0	52	76	0	0	23	0.78
30651326--30651356	13	2.3	14	94	5	55	54	3	0	41	1.16
30660930--30660969	19	2.1	19	100	0	80	15	45	15	25	1.84
30661640--30661708	36	1.9	36	90	0	111	44	11	14	28	1.80
30661968--30662015	24	2.0	25	87	4	71	45	0	2	52	1.12
30664100--30664295	98	2.0	98	94	4	342	36	12	14	36	1.84
30667823--30667877	16	3.4	16	89	0	83	43	1	27	27	1.65
30668061--30668121	18	3.3	18	88	9	88	59	1	1	37	1.17
30673858--30673904	21	2.3	21	88	3	69	23	23	14	38	1.92
30675210--30675309	42	2.3	42	81	10	105	38	1	4	57	1.24
30677062--30677145	41	2.0	41	95	0	150	25	25	17	32	1.97
30680405--30680443	18	2.2	18	95	0	69	10	17	17	53	1.71
30686677--30686709	2	16.5	2	100	0	66	51	48	0	0	1.00
30697813--30697881	29	2.4	28	74	9	68	75	2	5	15	1.12
30713890--30714008	52	2.2	52	92	2	193	36	14	23	26	1.93
30713971--30714117	37	4.0	37	91	1	226	37	15	21	25	1.93
30715312--30715374	30	2.1	30	84	0	81	53	12	3	30	1.54
30730799--30730839	21	2.0	21	85	0	55	21	41	7	29	1.80
30732597--30732646	17	2.7	20	78	18	70	10	0	44	46	1.37
30737236--30737285	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30743611--30743661	21	2.4	21	83	3	66	41	1	0	56	1.10
30746804--30746846	21	2.0	21	86	0	59	55	4	4	34	1.41
30754251--30754276	5	5.2	5	100	0	52	19	19	19	42	1.90
30755364--30755391	14	2.0	14	100	0	56	50	0	7	42	1.30
30757489--30757519	15	2.1	15	100	0	62	48	19	6	25	1.72
30768468--30768523	26	2.2	24	78	12	58	30	5	0	64	1.16
30769654--30769700	10	4.4	10	82	10	58	21	29	0	48	1.50
30770866--30770898	7	4.7	7	100	0	66	27	0	15	57	1.38
30771822--30772043	111	2.0	111	98	0	426	23	22	26	27	1.99
30772460--30772992	126	4.3	125	88	6	811	26	20	19	33	1.97
30772484--30772965	240	2.0	240	93	1	815	26	20	18	34	1.96
30773025--30773423	95	4.2	96	84	3	439	40	18	3	38	1.66
30775766--30776621	89	9.6	89	86	0	1093	30	23	22	23	1.99
30775766--30777408	178	9.3	178	80	5	1693	30	23	22	23	1.99
30775766--30777408	267	6.2	267	79	6	1717	30	23	22	23	1.99
30776748--30777408	89	7.4	89	85	0	894	28	24	23	23	1.99
30775987--30777535	787	2.0	786	91	0	2495	30	22	22	24	1.99
30777462--30777950	132	3.7	132	91	0	773	28	18	23	29	1.98
30782156--30782187	16	1.9	17	93	6	57	50	3	0	46	1.17
30782176--30782214	5	7.8	5	88	0	51	51	0	2	46	1.14
30782362--30782498	68	2.0	66	97	2	256	32	4	7	55	1.47
30782486--30782520	15	2.4	15	90	4	54	37	2	5	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30782663--30782700	20	1.9	20	89	10	60	63	2	5	28	1.30
30792394--30792507	54	2.1	54	81	3	131	21	27	14	35	1.93
30792552--30792744	67	2.9	66	87	1	269	22	20	18	38	1.93
30792526--30792754	67	3.4	66	83	6	241	23	21	16	38	1.93
30794728--30795006	113	2.4	115	85	4	377	29	19	20	30	1.97
30795344--30795401	7	8.3	7	81	5	55	12	0	44	43	1.41
30795344--30795401	21	2.8	21	84	5	73	12	0	44	43	1.41
30795349--30795389	15	2.9	14	85	7	64	17	0	39	43	1.49
30796582--30796672	45	2.0	45	89	0	137	25	31	7	35	1.84
30798282--30798361	34	2.3	36	80	4	92	37	6	2	53	1.40
30798460--30798516	21	2.8	21	78	2	62	43	0	1	54	1.10
30798518--30798581	23	3.0	22	72	21	64	46	20	1	31	1.60
30798637--30798713	24	3.6	21	73	14	68	51	19	1	27	1.54
30798651--30798705	12	4.8	12	88	4	78	52	16	1	29	1.54
30798644--30798712	24	3.0	24	87	8	92	53	17	1	27	1.52
30798651--30798712	12	5.5	11	87	11	74	53	16	1	29	1.52
30798788--30798824	16	2.3	16	90	0	56	51	16	8	24	1.71
30798881--30798917	16	2.3	16	90	0	56	51	16	8	24	1.71
30798965--30799054	9	10.6	9	71	20	68	46	20	3	30	1.66
30798974--30799054	16	4.9	16	72	14	76	46	19	3	29	1.67
30798659--30799015	93	3.8	93	93	2	574	49	20	3	27	1.64
30798978--30799054	25	3.1	25	74	7	84	45	20	3	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30804510--30804578	21	3.3	21	89	0	102	34	20	43	1	1.61
30804993--30805112	42	2.8	42	86	5	152	29	20	22	27	1.99
30805010--30805379	42	8.9	41	82	9	188	24	21	23	31	1.98
30805009--30805394	43	9.2	42	83	6	414	24	21	23	30	1.99
30805009--30805394	79	4.6	81	81	7	404	24	21	23	30	1.99
30807319--30807368	17	2.7	20	78	18	70	10	0	44	46	1.37
30811959--30812008	17	2.7	20	78	18	70	10	0	44	46	1.37
30816477--30816703	41	5.5	41	93	1	366	29	18	28	22	1.98
30819497--30819533	13	2.8	13	100	0	74	51	0	24	24	1.49
30821166--30821437	41	6.6	41	74	5	201	35	25	19	19	1.95
30821120--30821407	123	2.3	123	79	3	303	37	25	18	19	1.94
30821111--30821420	82	3.8	82	80	1	255	37	25	17	19	1.94
30821558--30821663	53	2.0	53	98	0	203	35	14	22	27	1.93
30829086--30829280	103	1.9	103	90	2	311	34	23	13	28	1.93
30831054--30831883	409	2.0	410	96	0	1527	20	19	19	40	1.92
30841938--30841972	5	7.0	5	86	0	52	0	0	40	60	0.97
30842582--30842631	3	16.7	3	95	0	91	64	0	2	34	1.05
30843086--30843190	51	2.1	51	88	0	156	48	5	12	33	1.64
30843155--30843179	13	1.9	13	100	0	50	56	8	16	20	1.65
30843627--30843652	6	4.3	6	100	0	52	50	0	0	50	1.00
30848481--30848688	91	2.3	91	91	0	326	45	3	3	47	1.37
30848603--30848663	28	2.2	28	85	5	81	45	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30848704--30849356	120	5.4	120	97	0	1200	41	2	6	49	1.42
30848829--30848880	15	3.6	15	80	12	56	44	0	1	53	1.11
30848949--30849000	15	3.6	15	80	12	56	44	0	1	53	1.11
30849069--30849120	15	3.6	15	80	12	56	44	0	1	53	1.11
30849189--30849240	15	3.6	15	80	12	56	44	0	1	53	1.11
30849319--30849359	15	2.6	16	81	14	50	43	0	2	53	1.13
30849573--30849636	16	4.1	16	85	4	85	21	35	3	39	1.70
30850261--30850323	31	2.1	29	85	5	81	49	9	7	33	1.64
30853289--30853373	31	3.0	25	69	24	62	48	1	0	50	1.08
30853262--30853343	14	5.9	14	67	13	53	56	1	0	42	1.07
30853290--30853376	26	3.1	26	67	25	61	47	1	0	51	1.08
30853326--30853390	33	2.1	30	82	8	76	46	0	0	53	1.00
30853314--30853436	15	7.9	15	72	17	81	45	0	0	53	1.06
30856038--30856089	25	2.1	25	82	7	61	11	11	1	75	1.14
30862538--30862659	44	2.8	42	79	8	136	34	16	21	27	1.95
30862767--30863014	44	5.6	44	83	1	248	34	18	18	29	1.95
30862483--30862923	233	1.9	233	80	2	519	33	17	19	29	1.95
30862896--30863142	123	2.0	123	83	3	309	37	17	15	29	1.91
30866711--30866749	3	13.0	3	100	0	78	33	0	0	66	0.92
30875575--30875615	14	3.2	13	83	12	50	58	2	0	39	1.11
30876844--30876897	25	2.2	24	83	6	72	53	3	0	42	1.18
30876858--30876906	24	2.0	25	88	4	73	53	8	0	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30889521--30889547	11	2.5	11	100	0	54	22	7	18	51	1.70
30890952--30891158	91	2.3	91	87	2	281	45	4	3	46	1.39
30891175--30891707	120	4.4	120	96	1	937	41	2	5	50	1.38
30891300--30891351	15	3.6	15	80	12	56	44	0	1	53	1.11
30891385--30891417	16	1.9	18	88	11	52	48	3	6	42	1.43
30891420--30891471	15	3.6	15	80	12	56	44	0	1	53	1.11
30891505--30891537	16	1.9	18	88	11	52	48	3	6	42	1.43
30891540--30891591	15	3.6	15	80	12	56	44	0	1	53	1.11
30891625--30891657	16	1.9	18	88	11	52	48	3	6	42	1.43
30891924--30891961	16	2.4	16	90	0	58	34	34	0	31	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208