genome.fa.s18.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  158  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51356774--51356815	15	2.6	16	88	11	59	66	0	26	7	1.17
51372055--51372365	40	7.8	40	97	0	559	28	19	28	23	1.98
51373699--51373808	55	2.0	55	100	0	220	12	23	30	32	1.92
51380734--51381044	40	7.8	40	97	0	559	28	19	28	23	1.98
51382378--51382482	55	1.9	55	100	0	210	12	24	31	31	1.92
51386437--51386511	33	2.2	34	90	2	116	42	12	6	38	1.68
51388260--51388303	18	2.4	18	88	11	63	6	18	2	72	1.17
51389946--51389989	22	2.0	22	95	0	79	34	4	36	25	1.76
51408899--51408955	28	2.0	28	86	6	80	31	8	8	50	1.64
51434891--51435217	173	1.9	173	96	0	600	30	24	14	30	1.94
51435177--51435248	29	2.5	30	84	13	105	29	29	13	27	1.95
51456344--51456616	40	6.8	40	95	0	474	30	19	27	23	1.98
51460389--51460417	14	2.1	14	100	0	58	58	6	13	20	1.58
51462248--51462313	32	2.0	33	97	2	125	30	6	24	39	1.79
51463788--51463840	26	2.0	26	85	7	72	37	22	15	24	1.92
51466551--51466736	38	4.8	39	86	5	184	27	28	20	22	1.99
51466522--51466736	77	2.8	78	77	10	208	28	27	20	22	1.99
51474706--51474857	40	3.8	41	87	1	166	28	27	20	23	1.99
51482295--51482425	40	3.3	40	89	2	201	23	20	27	28	1.99
51482295--51482462	40	4.2	38	81	9	167	24	20	27	27	1.99
51490147--51490330	40	4.6	40	83	8	198	23	20	27	28	1.99
51490147--51490327	80	2.3	81	84	11	223	23	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51497288--51497379	28	3.3	28	90	0	139	21	15	36	26	1.93
51497689--51498298	27	22.7	27	81	5	585	39	19	9	32	1.82
51498115--51498341	27	8.4	27	83	5	86	39	18	11	30	1.86
51501166--51501239	28	2.6	28	93	0	130	20	14	35	29	1.93
51501166--51501274	56	1.9	57	83	1	139	23	16	33	25	1.96
51501574--51501921	27	13.0	27	80	4	330	40	19	8	31	1.82
51501574--51501921	80	4.3	80	79	6	321	40	19	8	31	1.82
51501574--51501921	53	6.5	53	81	3	292	40	19	8	31	1.82
51505095--51505265	41	4.2	41	87	7	215	19	19	22	37	1.94
51510650--51510765	57	2.0	57	86	3	162	31	29	12	25	1.93
51510650--51510765	28	4.1	29	87	5	148	31	29	12	25	1.93
51510663--51510763	29	3.6	29	90	2	152	30	29	13	25	1.94
51513205--51513304	24	4.2	24	89	0	137	34	2	40	24	1.66
51514714--51514797	27	3.1	27	81	6	107	16	25	21	36	1.94
51519263--51519293	16	1.9	16	93	0	53	48	16	0	35	1.46
51523760--51523871	24	4.7	24	92	0	170	34	0	40	24	1.61
51523760--51523884	24	5.2	24	91	0	106	35	1	39	24	1.65
51523781--51523884	48	2.2	48	85	0	136	36	1	37	24	1.67
51525292--51525392	27	3.7	27	85	0	121	15	22	21	39	1.92
51525292--51525401	54	2.1	52	84	3	139	14	22	22	40	1.90
51526777--51526810	18	1.9	18	88	5	52	29	14	14	41	1.86
51528039--51528121	28	3.0	27	85	5	87	30	30	12	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51528063--51528121	28	2.1	29	93	3	102	30	28	11	28	1.92
51529050--51529082	12	2.7	13	90	9	52	75	0	0	24	0.80
51529053--51529085	13	2.5	14	85	14	52	75	0	0	24	0.80
51530125--51530179	27	2.0	27	100	0	110	47	10	3	38	1.56
51536151--51536441	41	7.1	39	88	6	307	28	30	21	18	1.97
51536187--51536441	82	3.1	82	97	0	474	27	30	22	19	1.98
51536187--51536441	41	6.2	41	92	0	429	27	30	22	19	1.98
51541000--51541115	57	2.0	57	86	3	162	30	30	13	25	1.94
51541000--51541115	29	4.1	29	84	5	148	30	30	13	25	1.94
51544520--51544606	43	2.0	43	82	4	104	25	29	19	25	1.98
51552469--51552553	43	2.0	43	81	9	102	28	30	16	24	1.96
51557418--51557624	39	5.3	39	84	7	190	24	28	22	25	2.00
51557441--51557571	39	3.3	39	94	1	208	24	29	22	23	1.99
51565511--51565733	39	5.6	39	87	5	263	25	28	22	23	1.99
51565511--51565733	79	2.8	79	83	7	283	25	28	22	23	1.99
51565513--51565733	118	1.9	119	83	6	297	24	28	22	23	1.99
51567484--51567569	42	2.0	43	86	2	120	45	23	9	22	1.81
51577143--51577203	30	2.1	30	90	3	97	37	24	14	22	1.92
51584862--51585037	50	3.5	49	85	3	217	30	26	18	25	1.98
51584862--51585045	101	1.8	99	84	2	251	29	26	18	25	1.98
51587619--51587721	54	1.9	53	86	2	143	33	17	23	25	1.96
51587619--51587725	27	4.0	27	80	9	119	33	18	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51589284--51589544	39	6.6	39	88	5	327	24	27	22	25	2.00
51597288--51597510	39	5.7	40	84	8	248	24	27	21	26	2.00
51597288--51597471	79	2.3	79	86	6	230	25	27	21	25	1.99
51597325--51597510	79	2.4	79	83	8	229	24	27	22	25	1.99
51602723--51603029	44	7.0	44	82	2	339	29	15	28	25	1.96
51602723--51603010	88	3.3	88	89	1	407	28	15	28	27	1.97
51603017--51603639	263	2.4	265	88	1	928	29	19	24	27	1.98
51603017--51603639	132	4.7	132	87	1	881	29	19	24	27	1.98
51606593--51606978	131	2.9	130	78	9	365	29	19	17	32	1.95
51617949--51618027	37	2.1	37	88	0	113	26	30	18	24	1.98
51618146--51618482	47	7.1	47	90	1	476	27	30	10	32	1.89
51626030--51626067	14	2.7	14	91	0	58	42	7	13	36	1.73
51626059--51626096	19	2.0	19	94	0	67	31	7	10	50	1.66
51627598--51627784	92	2.0	93	92	1	313	55	16	10	17	1.68
51632844--51633110	48	5.6	49	76	9	180	22	28	20	28	1.99
51632842--51633114	97	2.9	93	79	9	275	21	27	21	28	1.99
51632852--51633115	46	5.6	46	75	9	194	22	27	20	29	1.98
51640462--51640594	49	2.7	49	80	2	151	24	26	18	30	1.98
51640652--51640780	46	2.8	46	81	5	145	20	31	20	27	1.98
51645286--51645422	64	2.1	67	82	6	165	45	13	4	36	1.64
51650247--51650427	40	4.6	40	82	4	215	24	25	23	25	2.00
51650247--51650427	81	2.3	79	85	2	229	24	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51659617--51659668	23	2.3	22	80	9	59	23	0	7	69	1.14
51659713--51659738	13	2.0	13	100	0	52	30	0	7	61	1.24
51660244--51660290	23	2.0	23	95	0	85	44	19	10	25	1.82
51662746--51662822	38	2.0	38	97	0	145	36	22	10	31	1.88
51668563--51668608	21	2.2	21	96	0	83	45	10	17	26	1.81
51669412--51669444	3	11.0	3	100	0	66	66	0	0	33	0.92
51671152--51671180	3	9.7	3	100	0	58	34	34	31	0	1.58
51672851--51672896	8	5.9	8	90	10	69	54	0	0	45	0.99
51672851--51672887	15	2.5	15	100	0	74	54	0	0	45	1.00
51679683--51679867	79	2.3	81	85	7	245	25	26	22	25	2.00
51679683--51679867	40	4.7	40	80	6	198	25	26	22	25	2.00
51689334--51689395	30	2.1	30	90	6	99	25	4	9	59	1.49
51690104--51690202	30	3.3	30	97	0	189	15	36	24	24	1.93
51695580--51695741	42	3.8	42	83	1	207	27	24	15	32	1.95
51698983--51699098	44	2.7	44	82	6	139	28	23	18	30	1.97
51711684--51711733	26	2.0	26	92	7	86	38	10	8	44	1.68
51713788--51713838	25	2.0	26	96	3	95	39	9	7	43	1.67
51715892--51715942	25	2.0	26	96	3	95	39	9	7	43	1.67
51720041--51720092	26	2.0	26	96	0	95	38	9	9	42	1.70
51743500--51743538	15	2.6	15	80	15	53	58	7	7	25	1.52
51743731--51743785	24	2.2	25	84	9	69	54	3	1	40	1.28
51746059--51746110	26	2.0	26	96	0	95	44	7	9	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51750831--51750866	15	2.5	14	86	8	54	44	8	0	47	1.33
51751385--51751423	20	1.9	21	84	5	53	25	2	12	58	1.47
51753709--51753750	4	10.5	4	84	0	57	21	28	2	47	1.63
51753939--51753964	12	2.2	12	100	0	52	42	0	34	23	1.54
51755804--51755893	24	3.7	24	73	5	65	36	18	24	20	1.95
51755901--51755996	26	3.8	26	76	12	92	37	23	23	14	1.92
51760633--51760686	21	2.6	21	79	5	65	40	5	0	53	1.24
51760717--51760759	21	2.0	22	81	4	52	53	9	2	34	1.46
51761824--51761862	5	7.8	5	100	0	78	0	17	0	82	0.68
51765912--51765980	16	4.2	16	96	3	129	24	0	37	37	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208