Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  189  of  208  ( 24943 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59047004--59047056
24
2.2
23
83
9
70
15
20
22
41
1.89
59051892--59051963
36
2.0
37
81
8
85
61
0
13
25
1.33
59052280--59052304
13
1.9
13
100
0
50
64
4
8
24
1.38
59058237--59058305
27
2.5
28
80
13
90
40
8
1
49
1.43
59058440--59058509
19
3.7
19
78
3
88
38
8
0
52
1.32
59058445--59058515
37
1.9
37
97
0
133
40
9
0
49
1.36
59058734--59058772
19
2.1
19
85
4
53
35
7
0
56
1.28
59058778--59058873
37
2.6
37
98
0
183
48
0
13
37
1.43
59058778--59058865
18
4.8
17
77
12
86
50
0
13
36
1.42
59058778--59058873
19
5.2
19
77
9
117
48
0
13
37
1.43
59059056--59059096
19
2.1
19
86
4
55
53
0
9
36
1.34
59059158--59059228
27
2.6
27
88
0
97
16
29
23
29
1.97
59059318--59059367
27
2.0
25
88
11
75
52
0
12
36
1.39
59059886--59059940
22
2.4
23
82
14
69
58
1
0
40
1.09
59059959--59059998
19
2.0
20
90
4
64
60
0
0
40
0.97
59061031--59061072
18
2.3
19
84
12
52
28
0
4
66
1.12
59061015--59061113
19
5.3
18
70
17
60
35
0
5
59
1.19
59062428--59062466
15
2.7
15
92
4
62
61
30
7
0
1.24
59063135--59063230
38
2.6
35
83
13
122
43
10
9
36
1.71
59063135--59063231
36
2.6
37
84
12
128
43
10
9
37
1.71
59063135--59063243
37
2.9
37
81
6
123
44
11
10
34
1.74
59063335--59063693
18
20.1
18
69
14
208
44
9
13
32
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59063330--59063401
31
2.3
31
100
0
144
50
5
9
34
1.59
59063371--59063504
19
7.0
21
68
17
80
43
8
14
34
1.75
59063418--59063480
17
3.6
17
75
8
72
47
11
15
25
1.79
59063609--59063702
17
5.4
17
85
2
116
41
10
14
32
1.81
59063856--59063923
19
3.7
18
73
15
59
42
2
14
39
1.61
59063839--59063883
20
2.2
20
84
11
56
42
6
13
37
1.70
59064074--59064103
7
4.1
7
95
4
51
73
0
0
26
0.84
59064224--59064268
16
2.8
16
93
3
72
0
20
2
77
0.87
59064225--59064268
8
5.4
8
83
5
61
0
18
2
79
0.83
59064242--59064292
11
4.7
11
79
11
61
0
19
0
80
0.71
59064245--59064290
13
3.6
13
74
14
51
0
19
0
80
0.71
59064568--59064654
7
13.8
6
82
10
79
0
24
0
75
0.80
59064560--59064650
20
4.6
20
78
18
93
0
23
0
76
0.78
59064564--59064667
19
5.4
19
79
14
97
0
25
0
74
0.83
59064562--59064662
49
2.0
52
84
11
138
0
24
0
75
0.81
59064565--59064666
22
4.6
23
79
10
83
0
25
0
74
0.82
59065166--59065296
59
2.2
60
80
8
151
38
2
22
36
1.67
59065135--59065303
30
5.7
30
80
6
166
38
4
22
34
1.73
59070982--59071173
49
3.9
49
76
8
176
33
16
22
27
1.95
59070981--59071555
98
5.9
97
74
7
423
34
16
22
26
1.95
59071341--59071475
48
2.8
47
72
8
119
37
15
21
25
1.93
59071048--59071634
290
2.0
291
91
2
957
34
17
22
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59073139--59073189
3
17.0
3
100
0
102
66
0
0
33
0.92
59078675--59078715
13
3.1
14
82
10
59
48
14
17
19
1.81
59080298--59080322
13
1.9
13
100
0
50
16
12
48
24
1.79
59081816--59081962
27
5.4
28
75
8
99
20
25
18
36
1.95
59085246--59085279
18
1.9
18
88
5
52
32
8
11
47
1.71
59091354--59091400
21
2.2
22
92
3
78
21
19
38
21
1.94
59098006--59098040
3
11.7
3
87
0
52
34
5
0
60
1.21
59098006--59098037
12
2.7
12
100
0
64
34
6
0
59
1.23
59098405--59098488
4
19.8
4
75
10
53
20
4
4
70
1.24
59098373--59098446
32
2.3
31
80
15
80
20
6
2
70
1.23
59098405--59098488
24
3.7
23
73
13
75
20
4
4
70
1.24
59098624--59098945
106
3.0
107
88
2
432
30
17
17
34
1.93
59100328--59100371
19
2.3
20
84
7
56
27
20
11
40
1.86
59102041--59102862
274
3.0
274
94
0
1412
29
19
20
30
1.97
59102971--59103013
22
2.0
21
86
13
61
83
9
2
4
0.87
59103022--59103095
12
6.0
12
87
12
105
83
0
10
5
0.79
59102973--59103090
24
4.8
24
73
15
84
80
3
8
7
1.00
59103022--59103095
18
4.0
18
76
10
69
83
0
10
5
0.79
59103022--59103095
38
2.0
36
87
10
105
83
0
10
5
0.79
59103921--59103956
15
2.5
14
90
4
54
72
0
13
13
1.13
59105280--59105546
50
5.3
50
64
8
166
37
25
15
21
1.93
59105218--59105551
100
3.3
99
94
1
578
37
24
16
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59105554--59105603
25
2.0
25
84
0
64
38
20
18
24
1.93
59105546--59107062
374
4.1
374
97
0
2777
34
19
20
25
1.96
59106052--59106101
25
2.0
25
88
0
73
36
18
18
28
1.94
59106426--59106475
25
2.0
25
84
0
64
36
20
18
26
1.95
59106551--59106600
25
2.0
25
84
0
64
38
20
18
24
1.93
59106675--59106724
25
2.0
25
84
0
64
34
22
20
24
1.97
59106800--59106849
25
2.0
25
84
0
64
36
20
18
26
1.95
59106925--59106974
25
2.0
25
84
0
64
36
20
18
26
1.95
59105546--59107062
125
12.2
125
96
0
2772
34
19
20
25
1.96
59105546--59107062
499
3.0
498
96
0
2800
34
19
20
25
1.96
59108876--59108950
5
15.4
5
82
10
70
21
2
2
73
1.08
59108893--59108994
4
23.8
4
76
14
64
21
3
3
70
1.20
59109124--59109446
106
3.0
107
86
1
432
30
16
17
35
1.93
59110259--59110293
18
2.0
18
94
5
63
34
25
0
40
1.56
59114609--59114646
19
1.9
20
89
10
60
39
7
5
47
1.55
59118287--59118342
25
2.2
25
87
6
78
17
26
19
35
1.94
59118306--59118374
25
2.8
25
80
10
63
23
20
20
36
1.95
59119952--59119991
17
2.4
17
91
0
62
32
30
10
27
1.89
59119980--59120028
17
2.9
17
90
0
62
42
28
8
20
1.80
59126980--59127029
24
2.2
24
82
13
61
72
6
2
20
1.16
59131362--59131391
11
2.6
11
94
5
51
36
3
0
60
1.14
59133892--59133964
35
2.1
35
100
0
146
39
19
13
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59138706--59138784
30
2.6
30
86
11
90
29
12
5
53
1.60
59138728--59138778
15
3.3
15
76
13
59
29
9
1
58
1.41
59138991--59139032
14
3.0
14
76
13
50
50
0
0
50
1.00
59146540--59146586
3
15.7
3
95
0
85
34
2
0
63
1.06
59150848--59150887
21
1.9
21
89
0
62
72
5
10
12
1.26
59151756--59151816
7
9.0
7
85
10
74
72
0
11
16
1.13
59151757--59151816
20
3.0
20
86
11
79
71
0
11
16
1.14
59151756--59151816
13
4.5
14
84
12
74
72
0
11
16
1.13
59153050--59153119
38
1.9
37
85
8
99
34
21
25
18
1.96
59153175--59153458
85
3.3
85
75
8
329
29
18
22
28
1.97
59153107--59153462
175
2.0
175
95
0
631
30
19
22
27
1.98
59153298--59153639
129
2.6
129
91
1
542
30
19
21
28
1.97
59153427--59153921
175
2.8
175
94
1
850
30
19
21
28
1.97
59153123--59153766
304
2.1
304
95
0
1137
30
19
22
28
1.98
59153123--59153921
304
2.6
300
87
3
895
30
19
21
28
1.97
59155520--59155548
3
9.7
3
100
0
58
34
0
0
65
0.93
59158924--59158959
17
2.2
16
90
5
54
50
8
5
36
1.56
59159085--59159119
18
1.9
17
88
11
52
57
0
0
42
0.99
59161283--59161345
29
2.1
29
82
11
74
46
0
6
47
1.28
59163089--59163204
33
3.5
33
74
8
112
37
6
4
51
1.46
59164013--59164048
18
1.9
19
88
5
56
19
25
22
33
1.97
59165744--59165793
17
2.7
20
78
15
70
60
0
2
38
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59168070--59168111
14
3.1
14
86
3
59
26
21
0
52
1.47
59179344--59179383
20
2.0
20
85
4
55
37
0
7
55
1.29
59182783--59182814
16
2.0
16
100
0
64
43
6
18
31
1.75
59185993--59186151
77
2.1
77
96
0
291
29
16
6
46
1.73
59198142--59198225
35
2.4
36
76
7
93
23
14
28
33
1.94
59203457--59203487
14
2.2
14
100
0
62
38
6
19
35
1.77
59203483--59203542
31
1.9
31
83
6
77
38
11
10
40
1.75
59203542--59203604
31
2.1
30
85
8
85
46
14
9
30
1.76
59203551--59203611
31
2.0
31
90
3
97
47
9
8
34
1.66
59205869--59205916
13
3.8
13
80
5
53
43
0
0
56
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208