genome.fa.s18.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  101  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33975604--33975647	22	2.0	23	81	4	54	61	2	2	34	1.21
33975716--33975780	27	2.4	26	80	16	71	58	3	4	33	1.34
33977161--33977746	114	5.1	114	87	1	809	25	20	25	27	1.99
33978375--33978420	7	6.6	7	87	0	56	23	0	41	34	1.55
33978375--33978420	21	2.2	21	88	0	65	23	0	41	34	1.55
33978520--33978553	7	4.9	7	92	0	50	20	0	50	29	1.49
33978514--33978553	21	1.9	21	89	0	62	22	0	47	30	1.52
33978514--33978553	14	2.9	14	80	0	53	22	0	47	30	1.52
33978463--33978805	90	3.6	93	85	10	410	28	1	27	42	1.64
33978465--33978805	186	1.8	188	87	5	508	29	1	26	42	1.64
33978902--33978941	9	4.4	9	87	9	55	62	0	7	30	1.23
33978902--33978943	19	2.3	19	91	4	68	61	0	7	30	1.22
33978902--33978943	10	4.5	10	85	11	54	61	0	7	30	1.22
33978938--33978969	16	1.9	16	93	6	55	81	0	6	12	0.87
33985312--33985446	26	5.3	26	77	7	116	38	26	14	20	1.91
33985337--33985410	23	3.1	23	83	11	94	35	31	16	17	1.92
33985337--33985437	49	2.1	49	83	7	125	35	29	16	17	1.93
33990442--33990524	35	2.4	35	82	8	98	49	18	6	26	1.70
33998260--33998298	19	2.1	19	85	4	53	25	7	2	64	1.33
33998234--33998603	139	2.7	139	83	7	444	24	12	10	51	1.72
33998677--33998714	12	3.2	12	77	7	51	23	0	2	73	0.95
33998875--33999312	140	3.1	135	79	7	448	51	11	10	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33998922--33999320	140	2.9	139	81	5	466	50	11	11	26	1.72
34000605--34000644	13	2.9	14	85	7	55	42	5	0	52	1.23
34005946--34005979	7	4.9	7	100	0	68	55	14	0	29	1.40
34007816--34007842	12	2.2	12	100	0	54	22	14	25	37	1.93
34010726--34010750	13	1.9	13	100	0	50	68	8	8	16	1.38
34013159--34013199	3	13.7	3	100	0	82	0	31	0	68	0.90
34013602--34013638	18	2.1	18	89	0	56	45	5	10	37	1.62
34016915--34017219	107	2.8	105	85	7	393	27	17	21	33	1.96
34017220--34017734	106	5.1	104	71	17	377	30	18	16	34	1.93
34017913--34017951	18	2.1	19	90	4	62	30	0	7	61	1.24
34019270--34019680	110	3.8	109	78	8	401	27	15	18	38	1.91
34019284--34019682	105	3.7	107	79	7	337	25	16	19	39	1.91
34019437--34020166	349	2.0	349	87	6	1020	28	17	17	35	1.93
34019803--34020075	111	2.6	102	84	10	352	30	16	18	34	1.93
34021329--34021373	23	1.9	23	86	4	63	35	6	11	46	1.66
34021491--34021567	18	4.2	17	70	23	59	32	0	3	63	1.12
34022060--34022094	18	1.9	18	88	11	54	42	5	0	51	1.25
34023568--34023616	26	2.0	24	84	11	64	34	4	2	59	1.28
34026960--34027042	38	2.2	37	95	4	150	43	10	20	25	1.84
34033572--34033624	7	7.6	7	100	0	106	43	15	15	26	1.85
34033684--34033732	22	2.2	22	85	0	62	34	22	22	20	1.97
34043182--34043298	33	3.5	33	85	0	162	31	17	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34044670--34044840	36	4.8	36	91	0	279	29	20	11	38	1.88
34044670--34044840	72	2.4	72	97	0	324	29	20	11	38	1.88
34056729--34056765	17	2.0	20	85	15	53	54	0	0	45	1.00
34057047--34057290	118	2.1	118	94	1	427	38	17	4	39	1.68
34058344--34059302	304	3.2	303	87	5	1349	30	9	7	52	1.62
34058359--34059293	149	6.2	147	83	8	1063	30	9	7	52	1.61
34061663--34061706	21	2.1	21	82	0	52	52	22	4	20	1.65
34062948--34062980	17	1.9	17	88	11	50	48	21	0	30	1.50
34065779--34065815	9	4.1	9	89	0	56	45	10	10	32	1.74
34066731--34066756	5	5.2	5	100	0	52	23	19	19	38	1.93
34073917--34073968	23	2.3	22	80	12	61	17	11	5	65	1.44
34076392--34076416	5	5.0	5	100	0	50	20	0	0	80	0.72
34078724--34078767	20	2.2	20	88	8	63	54	0	4	40	1.21
34081122--34081170	22	2.2	23	82	10	66	42	18	8	30	1.79
34093321--34093364	13	3.3	13	83	3	52	47	0	6	45	1.29
34097855--34097909	20	2.8	19	82	17	60	65	1	1	30	1.13
34101617--34101685	4	17.8	4	71	11	54	66	0	2	30	1.06
34101628--34101683	12	4.9	11	77	16	60	64	0	1	33	1.04
34106666--34106705	16	2.6	16	88	4	55	22	2	2	72	1.09
34107102--34107203	51	2.0	51	100	0	204	21	7	19	50	1.72
34108999--34109480	240	2.0	240	99	0	955	35	16	13	35	1.88
34118032--34118227	40	4.9	40	92	0	311	12	15	27	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34123272--34123309	19	2.0	19	89	0	58	23	7	0	68	1.16
34126402--34126558	27	5.9	26	77	8	127	39	20	10	29	1.85
34126551--34126604	27	2.0	27	81	0	63	37	18	20	24	1.94
34127018--34127081	28	2.3	28	86	2	85	15	21	23	39	1.92
34130146--34130269	55	2.3	55	91	0	203	22	26	25	25	2.00
34131753--34131785	17	2.0	17	94	5	59	48	6	3	42	1.43
34133878--34133933	29	1.9	29	85	7	78	35	7	44	12	1.70
34140488--34140538	26	2.0	26	88	7	77	17	23	33	25	1.96
34140514--34140835	42	7.6	42	77	11	277	22	15	25	36	1.94
34140514--34140835	85	3.8	85	89	0	477	22	15	25	36	1.94
34151763--34151894	66	2.0	66	93	0	228	37	17	12	32	1.88
34155373--34155451	28	2.8	28	96	0	140	31	21	22	24	1.98
34155562--34155615	26	2.1	26	82	0	63	37	22	20	20	1.95
34155791--34155920	27	4.9	25	77	15	104	22	14	20	42	1.88
34155795--34155920	54	2.3	54	81	5	139	22	13	21	42	1.87
34165221--34165264	14	3.3	14	81	18	58	54	0	2	43	1.12
34165218--34165257	21	1.9	21	89	0	62	52	0	0	47	1.00
34165218--34165255	12	3.0	12	85	14	58	52	0	0	47	1.00
34166934--34166959	11	2.4	11	100	0	52	30	0	0	69	0.89
34173697--34173880	40	4.6	41	81	12	208	25	22	27	25	2.00
34173697--34173880	79	2.3	81	82	11	222	25	22	27	25	2.00
34173749--34173913	79	2.1	79	82	8	194	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34181733--34181916	40	4.6	41	79	12	190	25	21	27	26	1.99
34181785--34181949	79	2.1	79	80	8	176	26	20	27	26	1.99
34192233--34192275	23	1.9	22	86	13	61	37	2	9	51	1.47
34208778--34208872	26	3.4	30	72	21	91	54	1	5	38	1.30
34208840--34208894	24	2.4	24	79	11	62	61	0	1	36	1.06
34208985--34209118	66	2.1	63	85	12	175	45	13	5	35	1.66
34211447--34211509	25	2.5	25	87	7	83	46	50	0	3	1.17
34211447--34211500	6	8.8	6	81	18	67	46	51	0	1	1.11
34211447--34211500	19	2.9	18	82	17	67	46	51	0	1	1.11
34212803--34213049	110	2.2	110	79	9	270	27	22	19	30	1.98
34226884--34226932	23	2.1	23	92	0	80	46	4	30	18	1.67
34231386--34231434	23	2.1	23	96	0	89	44	4	32	18	1.68
34232237--34232279	23	1.9	22	86	13	61	37	2	9	51	1.47
34232697--34232765	36	1.9	36	88	11	106	43	2	2	50	1.32
34239844--34239876	16	2.1	16	100	0	66	39	12	12	36	1.80
34243976--34244011	19	1.9	19	88	5	56	27	13	11	47	1.77
34244823--34244889	29	2.3	29	86	0	98	41	13	19	25	1.88
34245286--34245366	9	9.0	9	83	5	83	34	6	22	37	1.79
34245286--34245366	18	4.5	18	80	6	92	34	6	22	37	1.79
34246877--34247243	27	13.6	27	79	3	353	43	17	15	22	1.87
34247473--34247537	26	2.5	26	78	9	78	18	16	23	41	1.90
34247651--34247736	30	2.9	29	87	3	111	22	27	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34254302--34254656	27	12.9	27	78	8	340	43	16	17	23	1.87
34254518--34254585	33	2.1	33	88	0	100	41	11	23	23	1.87
34254410--34254669	141	1.8	141	81	8	323	44	15	17	22	1.86
34254739--34254799	31	2.0	31	96	0	113	24	14	31	29	1.95
34254838--34254944	26	4.1	25	76	11	83	25	22	19	32	1.97
34255054--34255121	30	2.3	30	86	0	91	22	25	22	30	1.99
34271856--34272234	183	2.1	183	95	0	677	37	6	22	33	1.79
34273121--34273314	50	3.9	49	78	3	192	28	20	27	23	1.99
34275656--34275718	29	2.3	29	89	10	98	49	22	0	28	1.50
34287071--34287211	74	2.0	71	85	9	191	45	17	4	32	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208