genome.fa.s18.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  175  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55633609--55633664	29	1.9	29	88	0	85	46	8	0	44	1.34
55636295--55636579	50	5.7	50	80	6	321	27	22	28	22	1.99
55636354--55636572	99	2.2	99	96	0	402	28	21	27	21	1.99
55639866--55639981	46	2.5	46	84	0	133	32	17	16	33	1.92
55639910--55639981	23	3.1	23	67	15	67	31	19	16	31	1.94
55639908--55640085	46	3.9	46	80	4	173	33	22	14	29	1.94
55639923--55639995	23	3.2	23	66	14	60	32	17	16	32	1.93
55639901--55640084	90	2.0	91	82	3	219	32	21	14	31	1.94
55640585--55640675	47	2.0	46	84	2	119	29	26	14	29	1.95
55643214--55643287	32	2.3	32	97	0	139	52	4	8	35	1.50
55643221--55643276	19	3.3	19	62	27	52	55	3	8	32	1.48
55643818--55643878	3	20.3	3	83	6	79	60	1	1	36	1.16
55643880--55643906	11	2.5	11	100	0	54	77	14	0	7	0.97
55647161--55647391	119	1.9	119	94	0	408	24	10	29	35	1.89
55650889--55650931	21	2.2	19	87	8	59	51	0	2	46	1.13
55654771--55654808	18	2.1	18	95	0	67	76	2	15	5	1.08
55667966--55667995	16	1.9	16	93	6	53	63	23	6	6	1.43
55671553--55671585	14	2.4	14	90	10	50	63	9	0	27	1.24
55678362--55678432	10	7.3	10	80	4	56	35	7	0	57	1.26
55678362--55678431	20	3.5	20	76	3	79	35	7	0	57	1.26
55685308--55685373	30	2.2	30	82	12	82	24	15	15	45	1.84
55686972--55687012	22	2.0	22	85	9	59	14	0	31	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55687099--55687138	18	2.2	18	86	13	55	12	17	7	62	1.52
55687977--55688010	15	2.3	15	94	0	59	47	0	8	44	1.34
55687977--55688024	15	2.8	17	84	12	55	39	2	10	47	1.49
55692644--55692877	36	5.6	45	76	19	256	35	14	21	28	1.93
55692644--55692860	82	2.7	82	97	0	409	35	14	20	29	1.93
55701157--55701263	43	2.5	43	90	0	160	27	16	28	27	1.97
55701786--55701824	19	2.0	20	85	5	53	46	2	0	51	1.14
55702303--55702437	43	3.1	43	79	4	173	26	17	24	31	1.97
55712080--55712155	10	7.6	10	77	4	55	35	6	0	57	1.25
55716849--55716887	12	3.2	12	100	0	78	61	7	0	30	1.24
55726186--55726226	21	2.0	21	85	9	57	51	4	0	43	1.23
55727278--55727413	68	2.0	68	94	0	236	36	19	15	28	1.93
55729667--55729706	18	2.2	18	86	13	55	12	17	7	62	1.52
55737536--55738333	44	17.7	44	66	15	249	31	18	21	28	1.97
55737671--55738148	92	5.3	91	68	14	349	32	16	20	30	1.95
55737581--55738290	181	3.9	181	84	4	868	31	17	21	29	1.96
55737763--55738070	45	6.9	44	69	14	157	31	16	22	29	1.96
55738124--55738196	37	2.0	37	86	5	103	24	20	27	27	1.99
55738161--55739030	143	6.1	143	86	0	1220	30	20	20	27	1.98
55754305--55754388	38	2.2	40	89	4	127	28	7	20	44	1.78
55756451--55756519	35	2.0	35	91	2	113	63	4	13	18	1.45
55756456--55756529	35	2.1	34	87	7	105	64	5	12	17	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55757805--55757892	41	2.2	41	83	6	108	19	31	23	25	1.98
55757904--55757962	29	2.0	30	83	9	77	38	22	15	23	1.92
55759984--55760085	30	3.4	30	84	2	125	29	22	3	44	1.71
55761309--55761348	17	2.4	17	83	8	55	40	15	5	40	1.68
55761404--55761452	16	3.0	16	83	16	73	30	14	12	42	1.82
55761451--55761499	20	2.4	20	82	3	62	34	14	14	36	1.86
55761450--55761542	19	4.8	18	72	15	60	34	11	11	41	1.78
55761450--55761507	21	2.9	19	78	12	62	39	12	13	34	1.82
55761484--55761594	18	6.4	17	80	11	93	32	10	11	45	1.75
55761516--55761593	17	4.5	17	82	7	86	29	12	10	47	1.75
55765298--55765347	16	3.1	16	88	0	73	84	4	12	0	0.76
55765932--55765966	12	2.8	12	91	8	52	82	2	14	0	0.77
55767543--55767731	72	2.7	72	89	3	269	30	14	19	35	1.92
55767731--55768064	72	4.8	72	89	5	474	30	15	18	35	1.92
55768068--55768304	72	3.2	72	87	8	352	32	15	18	34	1.92
55768480--55768769	145	2.0	146	94	2	512	30	17	18	34	1.94
55768472--55768778	73	4.2	73	92	3	505	29	16	17	36	1.92
55768697--55768861	87	1.9	87	83	7	219	26	20	18	34	1.96
55768857--55768890	15	2.5	13	82	17	50	11	8	8	70	1.34
55768862--55768890	15	1.9	15	100	0	58	13	6	6	72	1.26
55768975--55769347	54	6.9	54	95	2	662	28	15	18	37	1.91
55768975--55769347	107	3.5	108	94	3	646	28	15	18	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55769621--55769692	30	2.4	30	83	0	99	30	22	2	44	1.67
55770246--55770315	28	2.3	32	81	13	87	74	1	20	4	1.07
55770915--55770954	17	2.4	17	83	8	55	40	15	5	40	1.68
55771010--55771058	16	3.0	16	83	16	73	30	14	12	42	1.82
55771017--55771198	18	9.8	18	72	19	69	30	13	12	43	1.81
55771056--55771147	19	4.8	18	74	12	67	33	11	11	42	1.79
55771069--55771199	18	7.3	18	77	12	101	33	12	11	42	1.78
55773360--55773407	25	1.9	25	91	0	78	52	6	8	33	1.57
55773759--55773795	5	7.4	5	87	0	56	21	18	35	24	1.96
55774034--55774080	24	2.0	24	86	0	67	44	0	4	51	1.21
55774059--55774110	20	2.7	20	85	11	72	40	0	5	53	1.25
55782763--55782864	50	2.0	51	90	5	163	35	10	15	38	1.83
55783331--55783370	5	8.6	5	84	13	50	67	0	0	32	0.91
55783333--55783366	18	1.9	17	94	5	59	70	0	0	29	0.87
55792296--55792403	23	4.8	23	74	11	80	29	16	13	39	1.88
55798548--55798616	31	2.2	31	84	5	86	31	2	7	57	1.40
55802646--55802689	22	2.0	22	82	8	54	43	2	0	54	1.12
55805104--55805201	42	2.3	42	78	1	106	14	23	18	43	1.86
55805330--55805375	16	2.9	16	100	0	92	30	0	23	45	1.53
55810993--55811029	4	9.2	4	100	0	74	24	0	0	75	0.80
55812455--55812489	7	5.0	7	96	0	61	14	2	14	68	1.32
55813235--55813276	14	2.9	15	85	7	59	33	2	0	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55821058--55821100	22	2.0	22	86	8	63	53	4	0	41	1.21
55822315--55822355	6	6.7	6	84	15	57	65	0	2	31	1.05
55823004--55823084	29	2.7	30	86	5	110	54	13	1	30	1.47
55823009--55823067	14	4.2	14	76	6	57	55	13	0	30	1.38
55825269--55825325	5	10.6	5	78	14	60	19	19	0	61	1.35
55825267--55825315	16	2.9	17	82	14	59	18	18	0	63	1.32
55825262--55825308	22	2.1	22	92	0	76	14	14	0	70	1.18
55825269--55825325	27	2.1	27	90	6	89	19	19	0	61	1.35
55825269--55825325	11	5.3	10	80	14	60	19	19	0	61	1.35
55825272--55825325	22	2.5	22	87	0	72	20	20	0	59	1.38
55825361--55825406	18	2.8	16	86	6	65	17	13	6	63	1.50
55825575--55825618	22	2.0	23	90	4	72	25	13	0	61	1.32
55825871--55825951	5	15.6	5	74	14	58	19	17	1	61	1.41
55825871--55825946	22	3.6	22	80	10	95	19	17	1	61	1.41
55825867--55825924	19	3.2	19	85	4	75	15	18	0	65	1.27
55825947--55826128	22	7.9	21	70	24	109	24	12	0	63	1.29
55825943--55826193	48	5.3	48	88	4	384	24	13	0	61	1.33
55825943--55826193	94	2.7	94	91	3	398	24	13	0	61	1.33
55825997--55826166	21	7.4	21	66	22	76	24	14	0	60	1.34
55825968--55826241	73	3.8	71	74	17	244	24	14	0	60	1.33
55829378--55829493	53	2.2	53	81	6	137	24	19	13	42	1.88
55829451--55829754	108	2.8	107	84	5	358	34	20	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55830151--55830175	7	3.6	7	100	0	50	68	0	0	32	0.90
55837247--55837279	17	2.0	17	94	5	59	60	0	0	39	0.97
55839697--55839747	18	2.8	18	73	5	50	60	3	0	35	1.15
55843667--55843701	16	2.1	16	94	5	61	80	0	20	0	0.72
55845672--55845718	24	2.0	24	84	16	62	63	2	2	31	1.18
55846066--55846119	25	2.2	25	86	6	74	42	0	1	55	1.10
55851475--55851535	17	3.5	18	76	12	65	60	1	1	36	1.16
55854294--55854332	6	6.3	6	82	5	51	38	2	0	58	1.12
55862345--55862404	19	3.1	19	78	4	75	6	18	25	50	1.71
55864127--55864247	64	1.9	63	81	5	145	23	30	22	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208