genome.fa.s18.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  200  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61810598--61810639	22	1.9	22	95	0	75	40	0	7	52	1.29
61810437--61810867	233	1.8	233	92	2	731	32	4	9	54	1.51
61812092--61812138	14	3.3	14	80	11	51	31	0	0	68	0.90
61812434--61812464	8	3.9	8	91	0	53	51	6	0	41	1.27
61812430--61812468	16	2.4	16	100	0	78	48	5	0	46	1.24
61814467--61814704	49	4.7	50	77	6	196	28	20	26	23	1.99
61824899--61825285	212	1.8	212	91	1	641	37	8	14	40	1.75
61826022--61826061	21	2.0	21	90	5	64	45	0	2	52	1.14
61829412--61829457	23	2.0	23	91	0	74	32	28	28	10	1.91
61829632--61829662	15	2.1	15	93	0	53	41	25	9	22	1.84
61829671--61829712	20	2.1	20	90	0	66	30	16	11	40	1.85
61834839--61834882	21	2.1	21	100	0	88	34	13	27	25	1.93
61837800--61837834	18	1.9	18	88	0	52	20	20	28	31	1.97
61843854--61843884	15	2.1	15	93	0	53	41	25	9	22	1.84
61846744--61846787	23	1.9	23	85	0	61	43	4	29	22	1.73
61850418--61850481	23	2.8	23	85	4	85	43	4	28	23	1.73
61850841--61850904	31	2.1	31	100	0	128	25	15	12	46	1.81
61851363--61851515	76	2.0	76	93	0	261	30	16	14	38	1.88
61856713--61856750	18	2.1	19	90	5	60	21	21	5	52	1.66
61867835--61867883	14	3.9	13	77	20	50	34	0	0	65	0.93
61867832--61867879	20	2.5	20	86	3	62	37	0	0	62	0.95
61868638--61868719	40	2.0	40	100	0	164	46	14	2	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61870049--61870098	25	2.0	26	84	11	68	68	0	20	12	1.21
61870039--61870101	31	2.1	30	85	8	83	68	0	20	11	1.20
61877412--61877471	27	2.2	28	93	3	104	68	3	0	28	1.05
61882593--61882637	18	2.5	20	75	20	53	33	4	0	62	1.15
61891752--61892016	103	2.6	104	89	3	408	30	29	20	19	1.97
61897555--61897580	12	2.2	12	100	0	52	19	0	23	57	1.40
61897109--61897860	383	2.0	385	95	0	1355	34	8	12	43	1.73
61898743--61898767	8	3.1	8	100	0	50	48	0	0	52	1.00
61909894--61909919	12	2.2	12	100	0	52	7	15	30	46	1.74
61909988--61910354	114	3.2	114	88	1	533	24	22	27	25	2.00
61910305--61910395	41	2.2	41	90	0	137	20	24	29	25	1.99
61910172--61910471	155	1.9	155	88	4	453	23	22	27	27	1.99
61910714--61910755	15	2.9	14	82	6	57	21	0	40	38	1.53
61911032--61911080	7	6.9	7	76	4	53	20	0	46	32	1.51
61911028--61911095	15	4.7	15	80	10	63	22	0	44	33	1.53
61911008--61911093	36	2.4	36	80	3	93	23	0	40	36	1.55
61911581--61912195	146	4.2	146	94	2	1048	45	14	15	23	1.83
61912031--61912070	19	2.1	19	85	0	53	72	2	0	25	0.97
61914266--61914314	25	1.9	26	84	12	66	26	2	6	65	1.27
61915954--61916092	43	3.2	42	79	6	154	28	16	24	30	1.96
61915970--61916151	43	4.2	43	85	1	222	24	17	25	32	1.97
61936566--61936607	13	3.2	13	80	13	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61936689--61936717	15	1.9	15	100	0	58	41	0	10	48	1.37
61941803--61941852	15	3.1	15	76	15	55	44	0	2	54	1.11
61941890--61941920	16	2.0	16	93	6	55	38	0	0	61	0.96
61946483--61946524	16	2.6	17	81	7	52	38	0	16	45	1.48
61947832--61947889	6	9.7	6	86	0	62	27	6	15	50	1.70
61950419--61950495	29	2.7	29	89	0	127	23	16	18	41	1.90
61950956--61951581	274	2.3	273	83	4	769	34	14	10	39	1.81
61955035--61955099	28	2.3	29	79	15	73	55	1	1	41	1.18
61955473--61955543	29	2.4	29	83	0	88	25	9	19	45	1.81
61955764--61956459	274	2.6	260	85	6	873	35	15	11	38	1.82
61962897--61962960	7	9.3	7	75	20	55	71	0	6	21	1.07
61962904--61962963	12	5.2	12	75	20	58	73	0	5	21	1.02
61970521--61970558	3	13.0	3	88	5	60	34	2	31	31	1.72
61976620--61976653	17	2.1	17	88	5	52	32	0	2	64	1.08
61991967--61992008	19	2.3	18	91	4	66	38	16	38	7	1.76
61991976--61992020	19	2.4	19	88	7	65	40	15	35	8	1.79
61992378--61992403	3	8.7	3	100	0	52	0	34	0	65	0.93
61992658--61992686	12	2.5	12	94	5	51	0	44	6	48	1.29
61992937--61992963	6	4.5	6	100	0	54	14	0	0	85	0.61
61993707--61993739	17	2.1	16	88	11	50	66	0	0	33	0.92
61998273--61998340	26	2.6	25	77	6	64	20	8	5	64	1.43
61999820--61999863	23	1.9	23	81	9	54	40	2	6	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62006348--62006464	57	2.1	57	85	3	155	37	14	7	40	1.75
62006836--62006907	17	4.5	17	69	20	57	38	1	0	59	1.06
62006864--62006925	11	5.7	11	71	21	51	43	3	0	53	1.17
62006856--62006923	30	2.3	30	97	0	127	39	2	0	57	1.14
62006904--62006954	14	3.5	14	74	10	57	45	3	0	50	1.20
62006873--62006973	30	3.4	29	78	14	116	42	2	0	54	1.15
62012000--62012120	64	1.9	62	88	3	179	35	31	5	27	1.80
62018633--62018702	35	2.0	35	94	0	122	35	15	4	44	1.67
62021333--62021535	46	4.3	48	84	9	240	35	13	21	28	1.92
62021267--62021535	98	2.7	98	92	2	450	34	14	22	28	1.93
62021499--62021607	37	3.0	37	90	2	177	35	16	22	24	1.95
62022301--62022358	21	2.9	19	73	12	62	39	0	1	58	1.08
62023374--62023439	31	2.1	31	88	0	96	22	10	22	43	1.84
62025552--62025592	15	2.8	15	82	14	50	53	4	7	34	1.50
62029189--62029401	117	1.8	116	85	3	302	33	22	12	31	1.92
62039172--62039222	25	2.1	24	88	3	75	41	0	0	58	0.98
62039758--62039791	16	2.1	16	88	5	50	67	0	2	29	1.05
62053392--62053503	40	2.8	39	80	5	118	39	16	16	27	1.90
62057162--62057221	30	2.0	30	86	0	84	6	8	58	26	1.52
62058913--62058950	20	1.9	20	94	0	67	36	13	0	50	1.42
62059887--62059941	19	2.8	20	83	5	67	58	3	1	36	1.26
62068482--62068529	25	1.9	25	86	0	69	20	14	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62077569--62077621	22	2.4	22	93	0	88	62	0	16	20	1.33
62077569--62077630	22	2.9	19	76	19	52	64	0	14	20	1.28
62078259--62078377	51	2.3	51	82	5	143	23	21	27	26	1.99
62090426--62090487	29	2.1	29	82	11	74	45	9	3	41	1.53
62106048--62106089	23	1.9	23	85	9	61	47	0	4	47	1.23
62121114--62121250	29	4.7	30	78	8	131	37	2	0	59	1.13
62121132--62121250	29	4.1	29	84	8	154	38	2	0	58	1.11
62121103--62121236	20	6.8	19	71	19	98	35	3	0	60	1.15
62121165--62121249	38	2.3	37	87	2	125	38	1	0	60	1.05
62121112--62121250	58	2.4	58	89	6	201	38	2	0	58	1.13
62121113--62121247	9	13.9	10	68	18	63	37	2	0	59	1.13
62126704--62126752	24	2.1	24	84	3	64	73	2	10	14	1.18
62128950--62129024	35	2.1	36	97	2	143	34	13	10	41	1.79
62130200--62130281	35	2.4	35	84	11	100	51	6	0	42	1.26
62130196--62130278	24	3.6	22	74	18	71	49	6	0	44	1.27
62132519--62132673	25	5.9	26	69	14	93	32	5	6	55	1.48
62132757--62132805	22	2.3	22	85	3	64	28	4	4	63	1.31
62132714--62132874	26	6.3	26	73	15	113	27	7	6	59	1.49
62148862--62148917	26	2.2	26	100	0	112	48	17	16	17	1.82
62153875--62153931	28	2.0	28	96	0	105	33	3	17	45	1.65
62155482--62155552	35	2.0	35	94	0	124	23	12	21	42	1.87
62158376--62158404	14	2.0	15	93	6	51	37	0	13	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62160591--62160637	16	2.9	16	84	6	51	38	6	2	53	1.39
62163427--62164170	234	3.1	233	91	4	1109	21	18	19	40	1.92
62167021--62167046	13	2.0	13	100	0	52	38	0	0	61	0.96
62167098--62167148	16	3.0	16	72	22	50	45	0	0	54	0.99
62167098--62167169	35	2.1	34	82	12	85	44	0	1	54	1.08
62168544--62168602	23	2.7	22	85	10	77	37	8	18	35	1.81
62169661--62169905	39	6.3	39	81	2	251	33	11	19	34	1.88
62171968--62172025	26	2.3	26	79	5	66	22	12	8	56	1.62
62173611--62173649	19	2.0	20	85	5	53	46	7	0	46	1.31
62181403--62181433	12	2.6	12	100	0	62	6	25	9	58	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208