genome.fa.s18.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  87  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30304372--30304457	41	2.1	42	82	2	102	52	25	17	4	1.64
30305221--30305287	34	1.9	35	87	3	100	31	7	13	47	1.70
30305215--30305291	14	5.0	15	71	20	52	33	7	14	44	1.74
30306854--30306891	12	3.2	12	85	7	51	73	0	10	15	1.09
30314722--30314755	3	11.3	3	100	0	68	67	0	0	32	0.91
30315306--30315343	14	2.7	14	88	8	51	42	7	15	34	1.76
30315800--30315851	15	3.2	15	73	19	50	44	0	1	53	1.11
30325047--30325780	164	4.5	165	89	3	1090	31	23	17	26	1.97
30325047--30325780	331	2.2	326	90	3	1107	31	23	17	26	1.97
30331351--30331439	31	3.0	30	78	4	99	30	10	17	41	1.83
30336257--30336300	19	2.2	20	88	4	63	63	2	0	34	1.07
30336239--30336294	29	1.9	29	85	0	76	64	5	0	30	1.16
30336790--30336830	19	2.2	19	86	0	55	41	9	0	48	1.36
30363229--30363326	49	2.0	49	95	0	178	16	15	17	51	1.78
30368354--30368378	12	2.1	12	100	0	50	52	0	16	32	1.44
30371227--30371276	25	2.0	25	92	0	82	38	2	4	56	1.30
30378073--30378158	42	2.0	42	100	0	172	53	4	25	16	1.62
30382838--30382862	12	2.1	12	100	0	50	44	0	8	48	1.32
30383484--30383637	41	3.8	41	98	0	290	24	21	28	25	1.99
30383484--30383666	41	4.5	41	94	0	285	24	21	27	26	1.99
30390150--30390183	17	2.0	17	88	0	50	55	11	14	17	1.68
30391203--30391397	41	4.8	41	96	0	345	25	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30391203--30391426	41	5.5	41	93	0	331	25	20	26	26	1.99
30396345--30396394	22	2.3	22	93	6	84	30	34	0	36	1.58
30396430--30396492	31	2.0	31	100	0	126	38	0	0	61	0.96
30398716--30399505	29	26.8	29	87	6	1119	44	26	0	29	1.57
30399047--30399072	12	2.2	12	100	0	52	46	38	0	15	1.46
30402699--30402977	124	2.2	124	94	1	488	35	20	14	29	1.93
30403564--30403613	14	3.6	14	76	15	50	52	4	0	44	1.20
30408648--30408760	24	4.6	24	69	15	79	39	19	23	16	1.91
30413161--30413211	21	2.5	19	78	12	57	1	27	3	66	1.20
30416973--30417011	20	2.0	19	85	5	51	20	0	15	64	1.30
30418724--30418765	6	7.0	6	100	0	84	83	0	0	16	0.65
30419727--30419880	10	16.4	9	68	16	64	62	3	2	31	1.24
30419682--30419880	19	10.7	19	66	17	64	64	4	2	29	1.23
30419727--30419786	18	3.2	20	75	13	56	66	0	1	31	1.01
30419678--30419773	37	2.7	36	71	20	85	67	3	0	29	1.06
30419829--30419872	9	4.6	10	86	8	56	61	2	0	36	1.09
30419829--30419880	19	2.7	19	84	0	68	63	3	0	32	1.12
30431777--30432068	154	1.9	154	85	4	401	39	11	8	40	1.73
30434449--30434515	25	2.7	25	75	9	64	25	26	14	32	1.95
30439990--30440112	57	2.1	58	87	1	176	28	21	7	43	1.79
30444032--30444094	29	2.1	30	85	8	85	22	19	23	34	1.96
30447171--30447216	25	1.9	23	82	8	56	63	2	4	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30449203--30449258	19	3.0	19	72	15	62	62	3	5	28	1.34
30449201--30449259	18	3.2	17	72	13	55	64	3	5	27	1.30
30450600--30450629	6	4.8	6	92	8	51	80	0	0	20	0.72
30461092--30461145	3	18.0	3	100	0	108	33	0	0	66	0.92
30466463--30466582	27	4.4	27	81	6	91	23	18	17	40	1.91
30466906--30466962	29	2.0	29	96	0	105	43	22	14	19	1.86
30467370--30467426	29	2.0	29	100	0	114	43	24	14	17	1.86
30466629--30467558	464	2.0	464	93	1	1596	30	23	17	28	1.97
30471290--30471345	19	3.1	18	82	10	60	53	5	1	39	1.34
30472244--30472296	13	4.1	13	80	0	61	33	7	22	35	1.83
30472449--30472529	28	3.0	28	82	13	73	48	2	0	49	1.14
30472468--30472529	28	2.1	30	88	11	94	48	1	0	50	1.10
30472468--30472515	13	3.3	15	75	24	57	47	2	0	50	1.12
30472543--30472595	21	2.5	21	82	14	65	49	1	1	47	1.23
30475022--30475061	2	20.0	2	100	0	80	50	0	50	0	1.00
30475071--30475105	18	1.9	18	88	0	52	60	0	22	17	1.37
30489814--30489857	13	3.4	13	77	22	56	34	2	15	47	1.58
30492466--30492508	21	2.0	21	86	8	61	32	6	18	41	1.77
30495883--30495926	23	1.9	23	86	9	63	18	2	50	29	1.59
30497116--30497343	27	8.3	27	80	9	176	44	17	15	22	1.86
30497168--30497330	28	5.9	27	83	9	186	46	16	12	23	1.82
30497160--30497343	55	3.3	55	85	0	242	45	17	14	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30497160--30497342	28	6.6	28	84	3	174	45	17	14	22	1.84
30497133--30497347	55	3.9	55	83	0	198	44	18	14	22	1.86
30504669--30504702	15	2.3	15	89	0	50	20	26	0	52	1.46
30513362--30513403	17	2.4	18	84	11	61	40	9	0	50	1.35
30522975--30523009	15	2.2	17	90	10	56	5	0	45	48	1.26
30523497--30523668	92	1.9	91	81	2	211	28	19	20	31	1.97
30530402--30530491	41	2.2	41	96	3	166	37	11	21	30	1.88
30536998--30537029	16	1.9	17	93	6	57	37	21	0	40	1.54
30537193--30537311	41	2.8	42	81	6	134	32	28	16	21	1.96
30537190--30537347	84	1.9	84	83	7	205	31	28	18	21	1.97
30538927--30538984	27	2.1	27	96	0	107	53	0	6	39	1.28
30540955--30540986	15	2.2	14	94	5	55	0	0	46	53	1.00
30540955--30540986	7	4.4	7	92	7	55	0	0	46	53	1.00
30547799--30547829	14	2.1	15	94	5	55	29	0	0	70	0.87
30567477--30567529	22	2.3	25	81	18	62	32	0	5	62	1.19
30569241--30569282	21	2.1	19	86	8	57	73	0	9	16	1.08
30570420--30570461	17	2.4	18	76	11	52	42	14	4	38	1.66
30570847--30571007	41	3.9	41	91	1	243	22	28	20	28	1.98
30570852--30571025	82	2.1	82	86	4	235	23	27	20	28	1.99
30572658--30572682	13	1.9	13	100	0	50	68	24	0	8	1.16
30573622--30573646	5	5.0	5	100	0	50	0	0	40	60	0.97
30573833--30574282	44	9.9	44	70	17	208	30	20	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30573929--30574148	96	2.3	96	85	9	331	29	19	15	35	1.92
30573844--30574112	146	1.8	145	83	7	357	32	17	15	34	1.92
30573833--30574147	51	6.6	50	74	14	213	30	19	15	34	1.93
30574231--30574444	112	1.9	110	84	6	281	34	16	16	32	1.91
30574399--30574576	44	4.0	44	82	4	214	28	20	19	32	1.97
30583064--30583176	24	4.6	25	71	10	81	25	23	19	31	1.98
30585098--30585138	20	2.0	20	85	4	55	29	9	7	53	1.60
30585248--30585292	19	2.3	20	88	7	67	44	6	22	26	1.77
30588007--30588048	22	1.9	22	90	0	66	23	0	0	76	0.79
30588008--30588055	16	3.1	15	77	14	53	25	0	2	72	0.95
30588006--30588050	14	2.9	16	77	12	58	22	0	0	77	0.76
30588579--30588616	18	2.1	18	85	9	51	26	0	0	73	0.83
30594510--30594549	19	2.0	21	90	9	66	42	0	0	57	0.98
30603734--30603781	19	2.5	19	100	0	96	43	12	0	43	1.42
30603838--30603867	11	2.7	11	89	0	51	43	16	0	40	1.48
30607927--30607978	14	3.7	14	80	7	52	28	23	21	26	1.99
30608071--30608142	26	2.7	27	80	4	83	36	29	13	20	1.92
30609791--30609835	21	2.1	22	84	12	58	66	8	11	13	1.44
30612236--30612260	12	2.1	12	100	0	50	36	8	16	40	1.77
30614432--30614477	22	2.2	22	85	11	62	60	6	2	30	1.34
30615516--30615574	3	20.3	3	74	6	50	57	1	1	38	1.19
30615533--30615574	17	2.4	18	92	4	68	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30615656--30615740	20	4.6	18	77	12	68	74	4	4	16	1.16
30615922--30616069	4	36.5	4	67	15	72	65	0	10	22	1.28
30615918--30616089	61	2.9	58	78	13	199	65	0	11	22	1.28
30615979--30616084	53	2.0	54	87	9	155	65	0	11	23	1.25
30617736--30617791	27	2.1	27	83	12	71	30	1	0	67	1.01
30617741--30617792	18	3.1	17	72	16	54	30	1	0	67	1.02
30623071--30623229	46	3.5	46	97	0	291	33	15	22	28	1.94
30623207--30623254	25	1.9	25	91	0	78	43	8	25	22	1.81
30626579--30626633	24	2.3	24	90	0	83	32	21	30	14	1.93
30626675--30626740	26	2.5	26	80	7	71	34	21	24	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208