genome.fa.s18.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  168  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53945697--53945778	28	3.0	28	76	3	94	29	17	14	39	1.89
53946981--53947006	6	4.3	6	100	0	52	34	0	0	65	0.93
53949775--53949799	3	8.3	3	100	0	50	0	32	0	68	0.90
53970144--53970190	24	2.0	24	95	0	85	19	29	12	38	1.89
53974765--53975004	131	1.8	131	88	1	365	24	20	17	37	1.93
53979521--53979780	131	2.0	131	86	4	364	23	18	21	36	1.95
53982763--53982804	9	4.1	10	82	14	50	30	2	2	64	1.19
53984442--53984488	20	2.3	20	96	0	85	29	4	27	38	1.76
53994034--53994507	44	10.7	44	77	8	379	32	18	20	28	1.96
54012889--54012917	3	9.7	3	100	0	58	0	0	31	68	0.89
54019454--54019539	23	3.9	23	68	11	81	43	6	26	23	1.79
54019469--54019552	42	2.0	42	92	0	141	44	8	22	25	1.80
54023993--54024040	23	2.1	23	96	0	87	45	4	31	18	1.68
54024012--54024095	42	2.0	42	90	0	132	47	8	20	23	1.77
54024537--54024596	30	2.0	30	100	0	120	23	16	26	33	1.96
54034055--54034108	28	1.9	28	92	0	90	14	18	51	14	1.76
54034156--54034192	19	1.9	19	89	10	58	16	5	32	45	1.70
54034159--54034204	18	2.5	19	82	3	58	10	6	36	45	1.65
54034628--54034725	47	2.1	47	100	0	196	33	19	14	32	1.92
54044437--54044477	6	6.8	6	94	0	73	17	29	0	53	1.44
54057286--54057326	21	2.0	21	90	0	64	29	21	29	19	1.98
54065082--54065131	26	1.9	26	95	0	91	32	16	22	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54071370--54071627	132	2.0	131	87	0	372	25	18	17	37	1.93
54075400--54075435	18	2.0	18	100	0	72	44	11	11	33	1.75
54079990--54080505	131	4.0	131	89	1	759	25	17	16	40	1.90
54079990--54080505	261	2.0	261	88	1	775	25	17	16	40	1.90
54091825--54091869	14	3.2	13	79	14	54	75	11	2	11	1.13
54091825--54091870	13	3.2	14	77	22	51	76	10	2	10	1.12
54092504--54092556	6	8.7	6	87	4	52	0	16	1	81	0.79
54099088--54099477	99	3.9	99	78	5	380	23	21	23	31	1.98
54099165--54099957	50	16.0	49	74	5	549	24	21	22	31	1.98
54099147--54099869	149	4.9	148	76	6	498	24	20	23	31	1.98
54099314--54099953	198	3.2	196	82	6	648	24	20	22	32	1.98
54099398--54099956	100	5.6	98	84	2	663	25	21	22	31	1.98
54105751--54105775	13	1.9	13	100	0	50	32	20	16	32	1.94
54106324--54106501	27	6.6	27	83	3	196	26	15	28	29	1.96
54106325--54106475	82	1.9	81	88	4	232	27	15	27	29	1.96
54106321--54106501	82	2.2	81	82	2	220	27	16	27	29	1.97
54114918--54114981	8	7.5	8	83	13	83	25	12	12	50	1.75
54114908--54114991	36	2.3	36	100	0	168	25	10	14	50	1.75
54115908--54115946	3	13.3	3	89	5	62	66	2	0	30	1.05
54118979--54119034	26	2.2	24	81	9	67	19	5	1	73	1.12
54119007--54119108	4	23.5	4	80	9	71	21	3	2	71	1.16
54118994--54119064	5	14.4	5	81	11	69	21	2	2	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54120807--54120850	19	2.3	20	84	7	56	27	20	11	40	1.86
54123180--54123212	7	4.7	7	85	14	50	87	12	0	0	0.53
54123179--54123212	14	2.4	14	95	5	59	88	11	0	0	0.52
54123180--54123224	14	3.2	13	84	12	54	84	11	0	4	0.76
54123181--54123224	20	2.2	20	87	4	61	84	11	0	4	0.77
54125647--54125961	49	6.4	49	79	10	344	34	20	20	25	1.96
54125647--54125955	99	3.2	97	93	3	516	33	20	20	25	1.96
54126326--54126375	25	2.0	25	84	0	64	36	20	18	26	1.95
54126449--54126497	25	2.0	25	84	4	64	34	18	18	28	1.94
54126573--54126622	25	2.0	25	84	0	64	36	20	18	26	1.95
54125936--54127459	495	3.1	500	93	2	2651	34	19	19	25	1.96
54126819--54126868	25	2.0	25	84	0	64	36	20	18	26	1.95
54125936--54127459	125	12.2	125	93	2	2642	34	19	19	25	1.96
54128939--54128982	8	5.1	8	81	13	52	15	0	0	84	0.63
54128943--54128996	26	2.0	28	85	10	76	18	0	1	79	0.82
54128946--54128993	20	2.5	20	81	15	57	16	0	2	81	0.79
54128933--54128987	13	4.0	14	74	11	51	16	0	3	80	0.86
54129097--54129140	23	2.0	23	86	8	65	50	4	0	45	1.22
54140146--54140323	27	6.6	27	83	3	196	26	15	28	29	1.96
54140147--54140297	82	1.9	81	88	4	232	27	15	27	29	1.96
54140143--54140323	82	2.2	81	82	2	220	27	16	27	29	1.97
54148688--54148751	8	7.5	8	83	13	83	25	12	12	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54148678--54148761	36	2.3	36	100	0	168	25	10	14	50	1.75
54149675--54149713	3	13.3	3	89	5	62	66	2	0	30	1.05
54152637--54152675	5	7.8	5	85	8	53	23	2	0	74	0.94
54154420--54154463	19	2.3	20	84	7	56	27	20	11	40	1.86
54156759--54156791	14	2.4	14	100	0	66	87	12	0	0	0.53
54156757--54156803	20	2.4	20	89	3	69	85	10	0	4	0.74
54159218--54159540	50	6.5	50	81	3	391	33	20	19	26	1.96
54159218--54159540	100	3.2	100	96	0	583	33	20	19	26	1.96
54159781--54159830	25	2.0	25	84	0	64	36	20	18	26	1.95
54159906--54159955	25	2.0	25	84	0	64	36	20	18	26	1.95
54160030--54160079	25	2.0	25	88	0	73	36	18	18	28	1.94
54160154--54160203	25	2.0	25	84	0	64	36	20	18	26	1.95
54160279--54160328	25	2.0	25	84	0	64	36	20	18	26	1.95
54160404--54160453	25	2.0	25	84	0	64	36	20	18	26	1.95
54160904--54160953	25	2.0	25	84	0	64	36	20	18	26	1.95
54159515--54161041	125	12.2	125	95	0	2772	34	19	19	25	1.96
54162902--54162957	26	2.2	24	81	9	67	19	5	1	73	1.12
54162930--54163035	4	24.5	4	81	9	79	21	3	2	71	1.15
54162917--54162991	5	15.4	5	82	10	70	21	2	2	73	1.08
54162917--54162993	15	5.4	14	82	13	79	22	2	2	72	1.09
54162930--54163035	44	2.4	42	83	12	117	21	3	2	71	1.15
54169837--54169913	27	2.9	27	90	3	120	16	24	38	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54170133--54170170	19	2.0	19	89	0	58	50	7	5	36	1.54
54170293--54170377	21	3.8	20	80	17	80	51	14	1	32	1.49
54170266--54170360	27	3.7	27	81	16	139	52	12	1	33	1.46
54170213--54170382	48	3.5	48	86	5	238	52	13	1	32	1.48
54170266--54170372	27	4.1	27	80	16	127	52	12	0	34	1.45
54170425--54170496	27	2.7	27	93	0	117	34	0	12	52	1.39
54170809--54170853	22	2.2	20	92	8	72	26	2	0	71	0.98
54171734--54171780	23	2.0	23	100	0	94	57	4	12	25	1.54
54172739--54172766	13	2.2	13	100	0	56	7	0	14	78	0.95
54173021--54173047	14	1.9	14	100	0	54	51	7	14	25	1.68
54181673--54181769	3	32.3	3	92	0	122	31	5	2	60	1.30
54181799--54181864	32	2.0	34	83	16	86	27	4	3	65	1.27
54184128--54184404	152	1.8	152	79	11	325	44	8	6	41	1.60
54184623--54184653	3	10.3	3	100	0	62	0	0	32	67	0.91
54187559--54187589	15	2.1	15	100	0	62	22	32	6	38	1.80
54194307--54194377	5	13.4	5	81	16	65	80	2	16	0	0.83
54194309--54194377	27	2.6	27	75	13	70	79	2	17	0	0.85
54194307--54194377	6	12.2	6	82	12	62	80	2	16	0	0.83
54194872--54194920	21	2.3	21	86	13	66	67	2	16	14	1.33
54194872--54194920	7	7.0	7	80	15	57	67	2	16	14	1.33
54196166--54196333	88	1.9	88	86	0	237	27	17	27	27	1.98
54196527--54196943	50	8.4	50	70	1	262	28	19	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54196548--54196943	100	4.0	100	89	1	591	28	20	23	27	1.99
54198710--54198766	3	18.3	3	89	7	87	31	0	5	63	1.17
54198923--54198961	19	2.1	19	90	0	60	48	2	0	48	1.15
54198953--54198984	17	1.9	16	93	6	55	31	3	0	65	1.08
54199369--54199404	5	7.2	5	93	0	63	19	0	2	77	0.88
54219482--54219516	17	2.0	18	88	5	54	34	0	0	65	0.93
54222340--54222388	24	2.0	24	88	7	73	18	36	10	34	1.85
54237299--54237705	44	9.3	44	79	5	351	33	17	21	28	1.96
54238313--54238342	12	2.5	12	94	0	51	80	20	0	0	0.72
54249080--54249137	29	2.0	29	96	0	107	43	6	22	27	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208