genome.fa.s18.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  40  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15432591--15432752	63	2.4	67	89	6	242	42	16	9	31	1.80
15432866--15432983	41	2.9	41	85	0	146	28	23	18	28	1.98
15434270--15434360	44	2.1	44	93	0	155	54	17	9	17	1.69
15435613--15435651	20	1.9	20	85	15	53	33	0	15	51	1.44
15435981--15436122	24	5.9	25	73	8	107	16	27	23	32	1.96
15435981--15436120	72	1.9	73	84	7	187	16	27	24	32	1.96
15435921--15436134	24	8.7	24	67	11	76	17	26	21	34	1.95
15435977--15436132	72	2.2	73	79	5	183	16	26	23	33	1.95
15439129--15439882	377	2.0	377	99	0	1499	39	11	15	33	1.84
15440053--15440148	48	2.0	48	87	4	140	25	15	12	46	1.81
15467845--15467873	2	14.5	2	100	0	58	51	0	48	0	1.00
15471758--15471815	20	2.8	20	80	17	57	55	3	0	41	1.17
15471783--15471900	21	5.9	20	64	15	66	62	0	1	35	1.05
15471798--15471823	11	2.4	11	100	0	52	61	0	0	38	0.96
15471783--15471881	29	3.3	29	92	5	155	62	0	2	35	1.07
15471789--15471900	29	3.0	40	71	27	129	65	0	1	33	1.03
15476126--15476150	5	5.0	5	100	0	50	80	0	20	0	0.72
15481054--15481124	31	2.3	31	92	0	115	33	15	19	30	1.93
15481578--15481652	29	2.5	30	80	12	82	50	12	6	30	1.65
15503459--15503505	18	2.7	18	93	3	78	46	0	4	48	1.21
15505500--15505548	18	3.0	16	80	16	64	40	2	0	57	1.10
15505802--15505838	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15506361--15506407	17	2.8	17	79	20	62	36	2	6	55	1.37
15506854--15506880	5	5.4	5	100	0	54	22	18	18	40	1.91
15514462--15514586	38	3.3	39	79	14	136	42	18	7	32	1.77
15514761--15514871	41	2.7	41	88	0	159	21	28	21	27	1.99
15514756--15514914	82	1.9	82	80	7	180	23	27	21	28	1.99
15519793--15520000	91	2.3	91	92	0	335	45	3	4	46	1.39
15519915--15519975	28	2.2	28	85	5	81	45	0	3	50	1.17
15519833--15519975	44	3.2	43	69	20	121	46	2	3	48	1.31
15520027--15520215	59	3.2	57	68	19	152	41	3	4	50	1.37
15520054--15520252	66	3.2	64	68	19	186	41	3	6	49	1.44
15520016--15520313	120	2.5	120	93	1	517	42	2	5	49	1.37
15520089--15520276	61	3.1	61	69	17	192	42	1	6	48	1.39
15520141--15520192	15	3.6	15	80	12	56	44	0	1	53	1.11
15520257--15520291	18	2.0	17	88	5	52	45	0	0	54	0.99
15520453--15520543	45	2.0	45	82	2	112	37	27	6	28	1.82
15520524--15520575	16	3.2	16	100	0	104	38	36	0	25	1.56
15522645--15522695	22	2.3	22	86	0	66	37	13	25	23	1.92
15524731--15524767	3	12.0	3	88	5	56	62	0	0	37	0.96
15527138--15527191	20	2.7	19	83	16	65	70	5	1	22	1.18
15535602--15535657	20	2.7	20	86	10	69	64	0	0	35	0.94
15539739--15539808	34	2.1	34	100	0	140	44	11	20	24	1.84
15547519--15547568	26	1.9	26	84	8	66	52	10	0	38	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15548848--15548899	7	7.9	7	85	12	58	1	23	0	75	0.91
15548854--15548883	9	3.3	9	90	0	51	0	16	0	83	0.65
15548854--15548890	18	2.1	18	90	5	58	0	18	0	81	0.70
15548848--15548897	25	2.0	25	88	3	75	2	20	0	78	0.86
15549430--15549478	26	1.9	25	84	12	64	22	16	40	20	1.91
15551830--15551874	20	2.2	21	88	11	76	60	2	0	37	1.09
15551832--15551892	19	3.2	20	86	9	83	57	4	0	37	1.20
15564283--15564341	19	3.1	18	73	7	55	33	10	13	42	1.78
15566539--15566591	23	2.3	23	93	0	97	20	20	26	32	1.98
15566721--15566793	38	1.9	37	86	8	103	45	1	21	31	1.61
15596641--15596680	21	1.9	21	85	10	55	35	2	0	62	1.09
15596626--15596678	25	2.1	26	89	3	81	33	1	0	64	1.05
15598006--15598044	17	2.3	17	90	0	60	2	17	0	79	0.84
15598119--15598148	3	10.0	3	100	0	60	33	0	0	66	0.92
15613637--15613682	24	1.9	24	86	8	67	47	4	6	41	1.49
15613648--15613699	24	2.2	24	82	0	59	50	5	3	40	1.45
15621464--15621507	19	2.2	21	80	15	58	65	4	13	15	1.41
15627159--15627204	11	4.2	11	80	0	56	21	4	6	67	1.32
15630588--15630859	41	6.6	41	88	1	384	24	29	19	26	1.98
15630588--15630856	123	2.2	123	93	2	450	24	29	19	26	1.98
15631164--15631376	76	2.8	75	73	10	191	40	17	3	38	1.66
15631423--15631774	153	2.3	156	83	4	403	42	15	4	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15631524--15631802	78	3.6	78	92	1	443	42	13	4	38	1.66
15637363--15637404	6	7.0	6	88	0	57	2	9	69	19	1.28
15637351--15637403	12	4.4	12	87	0	61	3	5	71	18	1.21
15639692--15639758	34	1.9	35	87	3	100	31	8	14	44	1.76
15645934--15645959	2	13.0	2	100	0	52	50	50	0	0	1.00
15650680--15650704	6	4.2	6	100	0	50	68	0	0	32	0.90
15655386--15655561	37	4.8	37	96	0	298	39	13	21	26	1.90
15655524--15655647	46	2.8	46	91	3	200	33	16	22	27	1.96
15668382--15668417	18	1.9	19	88	5	56	50	0	2	47	1.15
15674507--15674544	20	1.9	20	89	10	60	23	10	10	55	1.65
15681431--15681480	19	2.5	20	78	18	50	42	18	2	38	1.61
15682911--15682954	23	1.9	22	82	17	54	36	25	0	38	1.56
15683043--15683187	50	2.9	50	81	4	175	28	28	18	24	1.98
15684088--15684117	11	2.7	11	100	0	60	36	16	6	40	1.75
15687801--15687855	23	2.4	23	81	0	65	34	25	9	30	1.87
15687986--15688040	23	2.4	23	81	0	65	34	25	9	30	1.87
15687787--15688160	185	2.0	185	100	0	748	25	26	16	31	1.96
15690619--15690643	10	2.5	10	100	0	50	8	20	8	64	1.46
15694936--15694960	10	2.5	10	100	0	50	8	20	8	64	1.46
15700999--15701039	21	2.0	21	90	0	64	29	21	29	19	1.98
15707090--15707142	27	2.0	25	82	13	63	16	3	1	77	1.01
15707500--15707538	7	5.4	7	81	6	51	43	43	0	12	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15707503--15707555	22	2.3	24	90	6	83	37	47	0	15	1.45
15707831--15708444	73	8.4	73	88	3	817	25	25	21	27	1.99
15707844--15708444	218	2.8	216	86	4	794	25	25	21	27	1.99
15708341--15708550	113	1.9	113	82	2	269	24	25	23	27	2.00
15720440--15720544	24	4.5	24	89	2	151	44	5	27	21	1.75
15735622--15735757	68	2.0	68	98	0	263	24	25	25	25	2.00
15735759--15735908	74	2.0	74	97	0	282	29	10	30	29	1.91
15747645--15748158	47	10.6	47	81	10	529	33	8	28	28	1.86
15747645--15748158	94	5.3	94	86	8	677	33	8	28	28	1.86
15747800--15747827	14	2.0	14	100	0	56	35	7	28	28	1.84
15747753--15747874	61	2.0	61	100	0	244	32	8	29	29	1.86
15763948--15763981	14	2.4	14	100	0	68	50	0	23	26	1.50
15773530--15773570	19	2.1	20	90	4	66	58	2	7	31	1.38
15794800--15794824	11	2.3	11	100	0	50	28	16	16	40	1.89
15796518--15796562	23	2.0	23	82	8	56	71	0	8	20	1.12
15797482--15797541	21	2.8	22	75	7	70	18	15	25	41	1.89
15813673--15813719	23	2.0	23	91	0	76	51	12	8	27	1.69
15814875--15814904	3	10.0	3	100	0	60	33	0	0	66	0.92
15820100--15820141	14	2.8	15	80	19	52	26	2	2	69	1.13
15823799--15824033	32	7.3	32	80	5	226	43	11	9	35	1.74
15823814--15824029	64	3.4	64	91	0	315	42	11	10	35	1.75
15823809--15824029	96	2.3	97	84	0	291	42	11	9	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15823847--15824073	64	3.6	65	83	9	159	44	11	8	35	1.71
15824007--15824083	31	2.5	30	77	6	82	48	14	5	32	1.66
15827184--15827248	25	2.6	25	79	18	64	35	3	0	61	1.12
15832663--15832731	33	2.1	33	91	5	113	42	36	7	14	1.73
15832708--15832743	12	3.0	12	84	15	56	41	25	11	22	1.86
15836064--15836089	4	6.5	4	100	0	52	76	0	23	0	0.78
15849017--15849219	46	4.3	48	88	7	265	35	14	21	28	1.92
15848951--15849219	98	2.7	98	93	0	457	34	14	22	28	1.93
15849183--15849328	37	4.0	37	93	1	242	36	16	21	24	1.94
15850581--15850699	58	2.0	59	96	1	222	24	13	30	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208