genome.fa.s18.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  137  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44693793--44694352	140	4.0	140	84	3	732	31	21	19	27	1.97
44693824--44694352	280	1.9	280	89	1	828	31	21	19	27	1.97
44711117--44711170	28	2.0	26	82	17	65	24	11	12	51	1.72
44715879--44715903	6	4.2	6	100	0	50	0	48	0	52	1.00
44719692--44720089	50	7.8	50	87	2	499	22	30	20	26	1.98
44719643--44720089	100	4.4	100	84	2	493	22	29	20	27	1.99
44733576--44733707	38	3.5	38	76	6	124	35	17	20	26	1.95
44738106--44738154	22	2.2	22	82	10	55	34	2	14	48	1.55
44738407--44738462	24	2.3	24	90	3	85	23	23	21	32	1.98
44738394--44738462	25	2.8	25	86	2	104	23	24	20	31	1.98
44756634--44756753	40	2.8	45	73	18	126	26	10	12	50	1.73
44758707--44758739	11	3.2	11	83	16	52	63	18	0	18	1.31
44758675--44758740	9	7.0	9	73	21	55	54	21	0	24	1.45
44758826--44758923	33	3.2	33	64	28	88	45	13	9	31	1.74
44760718--44760825	40	2.5	44	77	14	125	48	12	11	27	1.76
44760742--44760824	40	2.1	40	93	0	139	44	15	10	28	1.80
44765345--44765452	40	2.5	44	77	14	125	48	12	12	26	1.77
44765369--44765451	40	2.1	40	93	0	139	44	15	12	27	1.82
44768626--44768676	22	2.3	23	86	10	79	17	41	13	27	1.87
44773794--44773834	18	2.3	18	95	0	73	36	12	4	46	1.63
44776311--44776472	44	3.8	42	74	9	132	30	20	20	28	1.98
44776847--44776890	21	2.1	21	95	0	79	40	6	13	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44776846--44776901	21	2.8	19	84	10	76	39	7	16	37	1.76
44776859--44776924	23	3.0	23	82	12	77	37	6	16	39	1.74
44776890--44776934	23	2.0	23	86	4	65	33	4	15	46	1.66
44777412--44777474	31	2.1	31	82	5	76	42	6	1	49	1.37
44777641--44777756	51	2.3	52	80	7	132	31	6	5	57	1.45
44780277--44780315	5	7.6	5	83	16	53	20	0	0	79	0.73
44781195--44781245	25	2.0	25	96	0	93	31	7	29	31	1.86
44788611--44788646	2	18.0	2	100	0	72	0	50	0	50	1.00
44792487--44792518	14	2.1	16	88	11	50	68	0	0	31	0.90
44796846--44796899	20	2.6	21	80	11	58	40	7	9	42	1.65
44798130--44798167	18	2.1	19	85	5	51	73	2	0	23	0.95
44803486--44803512	13	2.1	13	100	0	54	55	7	0	37	1.28
44803597--44803832	97	2.4	97	99	0	463	40	13	7	37	1.74
44803870--44803914	23	2.0	23	82	8	56	44	6	2	46	1.42
44807060--44807268	92	2.3	90	85	9	271	46	3	3	46	1.35
44807196--44807243	26	1.9	25	84	16	64	45	0	2	52	1.12
44807295--44807483	66	3.2	57	69	20	154	42	4	3	49	1.40
44807322--44807532	66	3.4	64	68	23	187	41	3	6	48	1.46
44807291--44807576	120	2.4	120	93	3	479	42	3	4	49	1.40
44807409--44807460	15	3.6	15	80	12	56	44	0	1	53	1.11
44807538--44807579	15	2.7	16	82	14	52	45	0	2	52	1.13
44807529--44807570	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44807513--44807794	156	1.8	156	94	1	503	47	3	3	45	1.37
44807681--44807715	18	2.0	17	88	5	52	45	0	0	54	0.99
44807944--44807979	16	2.2	16	95	0	63	41	33	0	25	1.55
44810836--44811046	90	2.4	90	81	8	244	39	20	9	29	1.85
44811342--44811457	54	2.1	54	85	6	155	28	5	2	63	1.29
44811364--44811467	17	5.8	18	72	13	72	26	3	1	67	1.18
44811355--44811472	54	2.1	54	84	9	150	31	3	1	63	1.21
44811573--44811762	89	2.1	91	85	1	258	33	9	22	35	1.86
44813959--44814016	12	4.8	12	78	18	57	1	25	5	67	1.21
44813959--44814016	24	2.4	24	85	8	73	1	25	5	67	1.21
44815517--44815545	14	2.1	14	100	0	58	48	6	20	24	1.74
44816806--44816879	31	2.4	31	86	2	114	47	10	8	33	1.68
44820318--44820471	25	6.3	25	68	20	80	31	17	27	23	1.97
44820316--44820423	49	2.2	49	81	6	130	32	17	27	22	1.96
44820359--44820496	73	1.9	73	83	5	181	32	19	25	22	1.97
44820336--44820549	25	8.6	27	67	15	99	34	19	24	21	1.97
44827046--44827100	20	2.8	19	75	2	56	43	10	30	14	1.80
44827086--44827273	20	9.4	20	64	11	71	42	15	26	15	1.86
44827086--44827276	40	4.8	40	77	2	177	42	15	26	15	1.87
44827047--44827276	80	2.9	80	77	3	230	42	14	26	16	1.86
44829482--44829513	12	2.7	12	100	0	64	62	6	6	25	1.42
44839884--44839934	15	2.8	20	66	27	58	23	23	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44843881--44843919	12	3.2	12	88	0	60	17	23	7	51	1.71
44844113--44844252	50	2.8	49	79	6	140	25	25	19	30	1.98
44849661--44849832	25	6.9	25	70	8	91	20	27	18	34	1.95
44849684--44849832	75	2.0	75	81	5	176	20	26	17	35	1.94
44854418--44854463	22	2.1	22	84	8	58	43	2	4	50	1.34
44859549--44859592	20	2.2	20	84	8	54	75	9	13	2	1.14
44861236--44861329	18	5.4	17	82	8	77	31	9	22	36	1.86
44861248--44861329	18	4.6	18	87	0	101	31	10	23	34	1.89
44861236--44861329	36	2.7	36	85	4	122	31	9	22	36	1.86
44866737--44866775	9	4.4	9	84	15	55	53	20	2	23	1.57
44873790--44873852	30	2.1	30	90	0	99	23	3	15	57	1.53
44874888--44874922	6	5.8	6	96	0	61	68	0	14	17	1.21
44883197--44883234	20	1.9	20	84	10	51	44	5	0	50	1.24
44886155--44886212	30	1.9	30	93	6	100	44	0	22	32	1.53
44891366--44891502	41	3.4	40	77	7	143	22	20	27	29	1.98
44891366--44891519	41	3.8	41	73	11	129	23	20	25	29	1.99
44891823--44891884	29	2.1	30	82	5	74	27	1	33	37	1.67
44891871--44891917	16	3.1	15	79	8	51	21	0	42	36	1.53
44892092--44892123	15	2.1	15	94	0	55	25	0	34	40	1.56
44892133--44892174	21	2.0	22	85	4	59	19	0	42	38	1.51
44892154--44892182	15	1.9	15	100	0	58	13	0	51	34	1.42
44894489--44894513	5	5.0	5	100	0	50	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44895845--44895882	15	2.4	17	86	8	53	28	0	2	68	1.03
44896978--44897034	27	2.2	26	81	9	62	26	8	1	63	1.34
44897282--44897404	42	2.9	43	85	4	169	26	19	27	26	1.99
44900309--44900349	21	2.0	21	85	9	57	58	2	2	36	1.24
44901444--44901506	23	2.7	23	75	0	63	42	20	11	25	1.85
44907449--44907499	26	2.0	26	100	0	102	52	15	3	27	1.60
44907452--44907516	26	2.5	26	87	5	87	52	12	4	30	1.59
44908148--44908217	34	2.1	34	100	0	140	44	5	25	24	1.76
44911488--44911564	29	2.6	29	83	2	91	32	7	15	44	1.75
44911536--44911601	33	2.0	34	90	3	107	31	4	15	48	1.65
44911817--44911864	18	2.7	18	81	12	62	29	2	20	47	1.61
44912525--44912576	17	3.1	17	83	8	61	34	5	15	44	1.70
44913630--44913694	29	2.3	29	86	2	87	20	20	13	46	1.84
44914036--44914073	9	4.3	9	83	6	51	31	0	10	57	1.32
44924448--44924636	41	4.6	41	87	2	236	29	19	23	28	1.98
44936958--44936987	15	1.9	16	93	6	53	53	3	23	20	1.60
44945615--44945660	23	2.0	23	95	0	83	30	23	4	41	1.74
44946200--44946311	42	2.7	42	84	5	129	42	16	24	16	1.88
44946163--44946348	21	8.9	21	70	5	90	41	16	24	17	1.89
44954274--44954335	22	2.8	22	81	13	74	64	4	1	29	1.23
44954356--44954396	21	2.0	21	85	0	55	56	4	7	31	1.48
44954959--44955054	19	4.7	21	77	10	65	41	15	5	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44954972--44955067	19	4.8	19	84	5	102	39	15	7	37	1.75
44954988--44955067	38	2.2	36	86	4	115	37	16	7	38	1.77
44962632--44962709	33	2.4	33	83	12	106	43	12	24	19	1.86
44966823--44966854	6	5.3	6	96	0	55	12	37	0	50	1.41
44970736--44970908	75	2.3	75	81	2	204	28	21	25	24	1.99
44972804--44972834	16	1.9	16	93	0	53	41	0	3	54	1.16
44976447--44976742	99	3.0	99	85	4	409	24	22	21	31	1.98
44976594--44976747	50	3.1	50	66	9	134	23	24	24	28	2.00
44976925--44976989	32	2.0	32	100	0	130	32	27	12	27	1.92
44977057--44977214	45	3.4	45	66	17	124	27	24	19	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208