genome.fa.s18.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  97  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32932424--32932479	3	18.7	3	81	7	51	62	8	1	26	1.35
32933059--32933092	16	2.2	15	89	5	50	88	2	8	0	0.62
32933496--32933520	13	1.9	13	100	0	50	32	8	20	40	1.81
32933517--32933558	14	2.8	15	82	7	50	14	4	4	76	1.12
32938465--32938506	16	2.6	16	92	0	66	38	4	30	26	1.77
32938732--32939430	119	6.0	119	88	7	1071	51	5	1	42	1.30
32939008--32939430	222	1.9	220	95	1	758	51	5	1	41	1.32
32939239--32939425	61	3.1	61	70	9	193	51	6	1	40	1.37
32939228--32939412	64	3.1	59	69	19	184	50	6	1	41	1.38
32940821--32940924	49	2.1	49	94	0	181	50	10	7	31	1.65
32942750--32942815	33	2.0	33	96	0	123	39	3	16	40	1.64
32949610--32949674	28	2.4	28	86	2	87	10	21	3	64	1.38
32957438--32957684	50	4.8	50	79	4	228	27	21	28	22	1.99
32961349--32961745	46	8.6	45	75	17	238	34	14	21	28	1.93
32961363--32961464	52	2.0	52	88	0	150	34	12	22	30	1.92
32961416--32961497	38	2.2	38	97	0	155	31	14	19	34	1.92
32961349--32961707	98	3.8	92	77	16	340	34	14	21	29	1.93
32961499--32961689	52	3.8	51	88	6	268	35	15	20	28	1.93
32961671--32961743	37	2.0	37	91	2	121	36	16	21	24	1.94
32965409--32965458	24	2.1	24	85	7	66	50	6	2	42	1.38
32965544--32965577	14	2.4	14	90	0	50	64	5	5	23	1.38
32972804--32972842	4	9.8	4	100	0	78	51	23	0	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32972908--32972959	4	13.5	4	90	8	81	50	21	0	28	1.49
32973189--32973218	9	3.4	9	95	4	53	16	0	0	83	0.65
32973542--32973573	17	1.9	17	93	6	57	62	0	0	37	0.95
32977970--32977999	15	1.9	16	93	6	53	46	3	26	23	1.68
32978363--32978399	9	4.1	9	92	0	65	29	10	13	45	1.77
32997204--32997294	30	3.0	30	88	3	130	19	26	15	38	1.92
33015074--33015103	5	6.0	5	100	0	60	20	0	40	40	1.52
33015459--33015753	153	1.9	153	95	0	536	29	14	22	33	1.94
33016285--33016347	13	4.8	13	78	7	65	39	19	3	38	1.67
33016285--33016347	26	2.4	25	82	7	81	39	19	3	38	1.67
33017597--33017660	19	3.4	18	83	12	85	39	0	1	59	1.07
33023147--33023172	12	2.2	12	100	0	52	15	26	7	50	1.71
33029402--33029452	21	2.4	22	74	9	52	33	0	3	62	1.13
33031817--33031945	63	2.0	63	94	2	224	35	14	13	36	1.85
33033058--33033113	16	3.5	16	85	0	76	28	25	5	41	1.77
33035996--33037551	777	2.0	774	95	0	2808	20	15	26	38	1.92
33037980--33038025	6	7.7	6	85	0	65	15	19	17	47	1.82
33045283--33045381	23	4.3	23	92	0	144	30	24	21	24	1.99
33045283--33045380	46	2.1	46	92	0	160	30	24	21	23	1.99
33055415--33055478	3	21.3	3	96	0	119	0	34	0	65	0.93
33058880--33058934	20	2.8	19	86	10	83	40	9	0	50	1.34
33058882--33058942	21	2.8	22	75	25	67	39	9	0	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33058906--33058942	15	2.4	16	86	13	60	37	10	0	51	1.37
33059317--33059364	4	12.2	4	79	20	57	47	2	0	50	1.12
33059697--33059741	15	2.9	16	87	12	67	48	0	11	40	1.39
33059713--33059767	20	2.8	19	86	10	83	50	0	9	40	1.34
33062508--33062652	71	2.0	71	89	0	218	26	14	27	31	1.95
33072322--33072565	129	1.9	129	96	0	452	35	15	10	38	1.82
33076246--33076294	4	12.5	4	79	16	50	71	2	2	24	1.07
33076245--33076293	12	4.3	11	82	17	64	69	2	2	26	1.10
33078488--33078530	20	2.0	20	82	8	50	41	16	2	39	1.61
33079646--33079683	18	2.1	18	85	9	51	31	2	2	63	1.22
33084627--33084664	11	3.5	11	85	3	51	18	28	0	52	1.45
33084629--33084731	51	2.0	52	90	5	165	24	29	1	44	1.64
33084675--33084719	22	2.0	22	83	8	56	24	26	4	44	1.72
33084681--33084719	11	3.6	10	86	10	51	20	30	5	43	1.73
33086893--33087275	105	3.6	104	85	5	453	40	15	18	25	1.90
33087494--33087520	11	2.5	11	100	0	54	25	29	29	14	1.95
33087505--33088342	114	7.4	113	83	10	997	28	16	14	40	1.88
33088102--33088131	10	3.0	10	95	0	51	13	0	0	86	0.57
33091516--33091609	31	3.0	31	93	3	161	43	13	10	31	1.79
33097188--33097245	11	5.5	11	77	8	57	3	13	12	70	1.28
33097221--33097257	19	1.9	20	94	5	67	2	13	13	70	1.28
33097185--33097266	31	2.7	31	85	10	116	3	13	12	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33097801--33097894	32	3.0	31	92	3	152	45	12	9	31	1.75
33097802--33097897	31	3.1	31	92	3	156	47	11	9	31	1.71
33099265--33099544	126	2.2	126	91	0	479	26	23	18	31	1.97
33099577--33099857	96	2.9	93	77	9	280	40	15	2	40	1.62
33108006--33108036	8	3.9	8	100	0	62	35	0	25	38	1.56
33111952--33112039	36	2.4	36	90	0	140	30	21	13	34	1.92
33111948--33112040	18	5.2	18	82	0	114	30	22	13	33	1.93
33132151--33132247	43	2.3	42	87	5	133	30	32	16	19	1.94
33135022--33135067	23	2.0	24	86	4	67	63	8	10	17	1.51
33135008--33135067	23	2.5	23	81	8	66	63	6	10	20	1.47
33137346--33137685	87	3.9	87	88	0	491	27	25	20	27	1.99
33137668--33139813	88	24.4	88	92	0	3350	26	24	21	27	2.00
33140911--33140957	21	2.2	21	88	0	67	25	38	10	25	1.88
33142218--33142277	25	2.4	26	83	8	79	13	1	8	76	1.08
33142219--33142316	29	3.4	31	81	8	91	8	1	11	79	0.98
33142218--33142294	37	2.1	37	83	9	95	10	1	10	77	1.04
33142256--33142311	23	2.4	23	90	0	85	5	0	16	78	0.92
33142206--33142317	6	19.0	6	82	10	88	7	2	10	79	1.02
33144287--33144330	19	2.4	17	79	20	52	43	13	22	20	1.87
33146323--33146367	23	1.9	24	86	4	65	60	8	11	20	1.57
33151199--33151325	43	3.1	42	84	15	194	33	0	17	48	1.47
33151199--33151327	36	3.4	36	89	9	172	34	0	17	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33151379--33151405	13	2.1	13	100	0	54	37	11	0	51	1.37
33153936--33154049	41	2.8	41	86	1	158	17	21	20	41	1.91
33155745--33155777	17	2.0	17	88	5	50	54	3	3	39	1.31
33156891--33156941	21	2.2	24	83	10	63	37	7	25	29	1.84
33159409--33159452	14	3.1	14	83	3	52	45	0	2	52	1.13
33159817--33159920	52	2.0	52	96	0	190	31	12	14	41	1.83
33162475--33162499	3	8.3	3	100	0	50	0	0	68	32	0.90
33167727--33167840	59	1.9	59	85	3	158	52	7	10	28	1.64
33168322--33168351	15	1.9	16	93	6	53	60	0	0	40	0.97
33172448--33172477	3	10.0	3	92	0	51	30	33	0	36	1.58
33186174--33186225	24	2.2	24	89	0	77	55	9	1	32	1.43
33188139--33188190	24	2.2	24	89	0	77	55	9	1	32	1.43
33188887--33188926	19	2.1	19	90	0	62	37	20	10	32	1.85
33189701--33189899	101	2.0	98	91	2	317	28	19	17	35	1.94
33194877--33194902	5	5.2	5	100	0	52	42	19	19	19	1.90
33196020--33196050	9	3.4	9	90	0	53	38	22	12	25	1.90
33200729--33200817	30	3.1	29	71	19	78	41	0	5	52	1.25
33202992--33203033	16	2.6	16	92	0	66	42	7	2	47	1.43
33203938--33204006	36	1.9	37	85	5	97	46	1	2	49	1.25
33206088--33206376	143	2.0	143	92	1	481	36	10	17	34	1.85
33207394--33207477	39	2.2	39	89	4	125	28	15	27	28	1.96
33233076--33233117	18	2.2	19	87	12	59	61	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33233076--33233118	19	2.1	21	87	8	63	62	2	0	34	1.08
33236241--33236281	21	2.0	21	90	0	64	19	29	21	29	1.98
33239253--33239298	17	2.6	17	86	3	56	32	0	6	60	1.22
33239748--33239836	30	3.2	30	73	18	100	25	2	11	60	1.42
33239764--33239851	30	3.2	29	75	15	96	25	4	11	59	1.51
33239800--33239885	42	2.1	42	91	2	138	27	9	10	52	1.66
33240873--33240917	18	2.5	17	85	7	54	66	0	0	33	0.92
33241781--33241839	24	2.4	25	94	2	102	42	0	5	52	1.23
33241781--33241847	24	2.8	24	90	2	98	43	2	4	49	1.38
33245810--33245870	28	2.2	28	88	2	88	26	14	4	54	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208