genome.fa.s18.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  104  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34735493--34735560	23	3.0	22	83	8	84	63	0	0	36	0.95
34735773--34735807	17	2.2	16	90	10	54	40	0	0	60	0.97
34738476--34738544	31	2.3	31	89	2	104	40	10	10	39	1.73
34748781--34748916	45	3.0	44	81	8	141	37	14	22	25	1.92
34749322--34749375	27	2.0	27	85	0	72	53	5	18	22	1.65
34754787--34754848	19	3.3	19	77	6	72	56	0	1	41	1.09
34756646--34756775	38	3.4	39	84	4	133	36	16	16	30	1.91
34760168--34760220	23	2.4	22	84	12	65	35	7	13	43	1.72
34760964--34761018	21	2.9	18	81	10	65	27	20	23	29	1.99
34763035--34763101	26	2.6	26	83	7	82	47	1	1	49	1.19
34766896--34766972	9	8.4	9	79	2	55	23	5	24	46	1.72
34766923--34766973	18	2.8	18	87	0	66	23	5	23	47	1.73
34766896--34766972	27	2.8	27	78	2	73	23	5	24	46	1.72
34770822--34770864	18	2.4	18	88	7	61	44	0	0	55	0.99
34770833--34770865	14	2.2	15	89	10	50	45	0	0	54	0.99
34776393--34776445	25	2.1	25	96	0	97	49	13	18	18	1.80
34783392--34783441	22	2.3	22	92	0	82	36	26	10	28	1.88
34793512--34793556	23	2.0	23	86	0	63	20	15	17	46	1.84
34797931--34797970	14	2.9	14	84	0	53	32	7	17	42	1.77
34803142--34803214	24	3.0	24	89	0	119	36	4	46	12	1.61
34809975--34810394	208	2.0	208	99	0	831	34	6	20	38	1.78
34821271--34821320	23	2.3	23	86	6	68	26	2	4	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34833981--34834019	14	2.8	14	81	14	53	38	5	10	46	1.60
34833988--34834054	34	1.9	35	87	3	100	35	8	10	44	1.70
34834045--34834120	33	2.3	33	84	2	91	27	9	15	47	1.76
34839484--34839521	19	2.0	19	89	0	58	52	2	0	44	1.14
34840826--34840864	19	2.0	20	85	5	53	38	0	15	46	1.46
34841191--34841292	51	2.0	51	98	0	195	33	4	13	48	1.64
34844647--34844808	41	4.0	41	90	1	209	34	28	17	19	1.95
34845460--34845494	17	2.1	17	89	5	54	31	14	5	48	1.67
34848645--34848800	42	3.7	42	80	3	152	18	23	16	41	1.90
34848698--34848759	21	3.0	20	72	6	61	20	22	16	40	1.91
34855739--34855850	42	2.7	41	83	2	134	19	21	15	43	1.87
34855753--34855875	42	2.9	42	84	4	142	19	22	16	41	1.90
34859505--34859602	25	4.0	24	78	10	108	21	21	20	36	1.95
34861351--34861482	45	2.9	45	87	1	183	23	21	17	37	1.94
34861594--34861627	15	2.3	15	90	10	52	52	11	0	35	1.38
34863179--34863226	24	2.0	24	84	4	62	20	4	4	70	1.21
34863905--34864100	102	1.9	102	78	2	214	19	17	35	27	1.95
34867617--34867697	27	3.0	28	85	3	94	39	17	19	23	1.92
34868511--34868559	20	2.5	20	82	0	71	44	18	10	26	1.81
34872309--34872341	3	11.0	3	100	0	66	0	33	0	66	0.92
34883329--34883368	21	2.0	20	85	5	53	10	12	25	52	1.70
34885294--34885551	128	2.0	128	91	1	419	24	10	18	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34885721--34885748	6	4.7	6	100	0	56	46	0	0	53	1.00
34888298--34888350	13	4.1	13	78	7	63	41	0	1	56	1.10
34895163--34895188	13	2.0	13	100	0	52	46	23	0	30	1.53
34895430--34895460	5	6.2	5	100	0	62	80	0	0	19	0.71
34905191--34905226	17	2.1	18	89	5	56	11	36	36	16	1.84
34907842--34907906	20	3.2	20	73	16	71	15	35	13	35	1.87
34907828--34907929	40	2.5	40	91	0	159	18	30	15	35	1.92
34907849--34907914	20	3.3	19	74	16	62	18	30	16	34	1.93
34916032--34916082	9	5.6	9	79	9	50	33	3	41	21	1.72
34917709--34917740	3	10.7	3	100	0	64	34	0	34	31	1.58
34918340--34918392	3	17.7	3	96	0	97	66	0	1	32	1.03
34919249--34919288	6	6.7	6	91	0	62	0	62	15	22	1.32
34921627--34921654	3	9.3	3	100	0	56	32	0	0	67	0.91
34933086--34933175	46	2.0	46	84	0	117	25	17	21	35	1.95
34933962--34934039	29	2.6	30	85	6	95	44	16	8	29	1.78
34939966--34940144	39	4.6	38	83	5	205	34	17	28	18	1.95
34940007--34940108	19	5.3	19	64	13	55	33	15	32	18	1.93
34939978--34940144	78	2.1	78	86	0	235	34	17	28	19	1.94
34947683--34947732	25	2.0	24	85	11	66	8	34	0	58	1.28
34947683--34947732	24	2.0	25	85	11	68	8	34	0	58	1.28
34957454--34957590	27	5.1	27	85	0	170	23	13	18	43	1.86
34957454--34957590	54	2.6	53	89	2	204	23	13	18	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34957671--34958813	571	2.0	571	92	1	1914	41	20	18	20	1.91
34960929--34960986	28	2.1	28	80	6	64	36	3	3	56	1.33
34969305--34969342	13	2.8	14	80	19	53	65	5	5	23	1.34
34969897--34969969	17	4.3	17	74	11	60	53	1	12	32	1.47
34970428--34970485	21	2.6	24	81	10	70	41	15	6	36	1.74
34970428--34970474	23	2.0	23	87	4	67	38	17	6	38	1.75
34975233--34975295	29	2.1	30	88	8	94	36	19	4	39	1.72
34975243--34975306	29	2.2	29	86	5	85	31	25	3	40	1.71
34976130--34976183	26	2.0	26	85	7	72	27	12	20	38	1.89
34984474--34984500	11	2.5	11	100	0	54	37	22	22	18	1.95
34990390--34990441	26	2.0	26	100	0	104	19	11	30	38	1.87
34996132--34996207	38	2.0	38	100	0	152	36	23	18	21	1.95
34999175--34999234	27	2.3	26	86	11	86	31	1	0	66	1.01
34999185--34999249	33	1.9	34	87	3	96	30	3	1	64	1.18
34999179--34999241	27	2.5	25	81	18	78	31	1	0	66	1.01
35003438--35003494	11	5.6	10	79	10	53	84	3	10	1	0.82
35004021--35004062	7	6.0	7	81	18	52	69	0	16	14	1.20
35004021--35004066	15	3.2	15	88	11	62	69	0	17	13	1.19
35005377--35005911	50	10.8	49	69	5	227	29	22	24	23	1.99
35005426--35005851	50	8.6	50	69	8	269	29	22	25	22	1.99
35005372--35005905	99	5.4	99	87	3	718	29	22	25	23	1.99
35005372--35005882	199	2.6	199	88	2	744	29	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35007256--35007320	29	2.3	27	80	15	78	33	1	0	64	1.03
35007266--35007330	33	1.9	34	84	9	89	32	3	1	63	1.19
35009423--35009457	16	2.2	16	100	0	70	45	5	17	31	1.71
35012904--35012949	17	2.8	18	84	15	64	28	41	30	0	1.56
35016855--35016919	29	2.6	23	71	28	60	15	13	16	53	1.73
35020710--35020767	29	2.0	29	83	6	73	37	5	3	53	1.40
35022086--35022145	18	3.5	17	71	24	54	40	8	5	46	1.56
35023248--35023297	22	2.3	22	93	6	84	30	34	0	36	1.58
35023331--35023393	31	2.0	31	100	0	126	39	0	0	60	0.97
35025694--35025950	29	8.8	29	93	1	433	45	24	0	29	1.53
35029146--35029425	124	2.2	124	91	1	454	35	20	15	29	1.93
35031184--35031328	43	3.4	43	83	3	166	35	25	15	23	1.95
35031328--35031513	43	4.3	43	78	4	205	30	23	17	29	1.97
35031239--35031426	100	1.9	100	86	2	270	31	27	15	24	1.96
35034532--35034653	43	2.9	42	79	7	147	25	15	25	33	1.95
35037844--35038013	7	24.6	7	74	13	111	45	31	1	21	1.59
35037922--35038013	20	4.6	20	74	12	71	48	29	1	20	1.56
35037901--35037982	34	2.4	35	83	2	103	48	30	1	19	1.57
35037901--35037994	48	2.0	48	82	4	118	50	30	1	18	1.54
35038185--35038230	7	6.6	7	89	0	65	54	30	0	15	1.41
35038177--35038230	14	3.9	14	85	0	63	51	33	0	14	1.43
35038177--35038230	21	2.6	21	84	0	72	51	33	0	14	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35038267--35038327	14	4.3	14	74	2	50	54	26	0	19	1.45
35038682--35038837	40	3.9	40	76	5	134	28	23	16	32	1.96
35038682--35038831	81	1.9	80	84	1	201	28	22	16	32	1.96
35040022--35040058	19	2.0	19	85	15	51	27	0	13	59	1.35
35041531--35041736	46	4.4	47	72	11	163	26	16	19	37	1.92
35041560--35041759	94	2.1	94	80	3	242	29	16	18	36	1.92
35043480--35043547	20	3.3	20	66	18	59	50	16	1	32	1.54
35043485--35043551	22	3.2	22	61	26	54	50	17	1	29	1.55
35044300--35044349	24	2.1	24	96	0	91	28	26	10	36	1.88
35056847--35057063	107	2.0	107	97	0	407	29	11	17	41	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208