genome.fa.s18.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  24  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9289976--9290066	21	4.4	21	70	20	66	58	2	1	38	1.18
9289990--9290078	22	4.3	21	68	17	62	58	0	1	40	1.05
9289998--9290095	39	2.5	40	83	11	139	60	0	1	38	1.04
9290380--9290492	24	5.2	23	69	20	64	52	2	0	44	1.21
9293355--9293408	23	2.3	23	87	9	83	48	1	0	50	1.11
9307781--9307903	60	2.0	60	100	0	246	29	27	24	18	1.98
9308086--9308110	4	6.2	4	100	0	50	24	0	0	76	0.80
9318259--9318314	24	2.4	24	82	8	71	19	19	8	51	1.73
9326881--9327101	120	1.8	119	89	2	345	42	2	4	49	1.38
9326887--9327072	59	3.1	58	67	17	146	42	2	3	51	1.34
9341515--9341555	21	1.9	22	90	5	66	80	4	4	9	1.00
9341515--9341555	11	3.8	11	84	9	50	80	4	4	9	1.00
9345037--9345064	13	2.2	13	100	0	56	92	0	7	0	0.37
9345035--9345066	16	2.0	16	93	0	55	90	0	9	0	0.45
9356356--9356384	2	14.5	2	100	0	58	48	0	51	0	1.00
9357685--9357962	147	1.9	148	92	2	470	32	25	19	23	1.98
9371935--9372131	47	4.4	45	80	12	208	34	8	28	27	1.87
9372051--9372133	42	2.0	41	97	2	157	37	9	26	26	1.87
9372202--9372286	40	2.2	40	86	2	118	17	21	31	29	1.96
9389903--9389932	12	2.5	12	94	0	51	50	3	0	46	1.18
9393094--9393160	33	2.0	33	100	0	134	31	23	8	35	1.86
9394961--9395001	9	4.3	9	85	11	55	48	0	4	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9402486--9402512	8	3.4	8	100	0	54	33	0	0	66	0.92
9404852--9404890	6	6.5	6	100	0	78	51	15	33	0	1.44
9412626--9412687	32	1.9	32	83	6	81	46	0	6	46	1.28
9419117--9419146	3	10.0	3	92	0	51	66	3	0	30	1.07
9424343--9424407	25	2.6	24	80	9	67	46	3	1	49	1.27
9424545--9424596	19	2.8	19	76	2	52	46	0	5	48	1.26
9424564--9424608	19	2.3	19	84	7	54	44	0	6	48	1.29
9426705--9426747	22	1.9	22	85	4	59	37	2	2	58	1.24
9427786--9427997	106	2.0	105	92	0	352	35	12	6	44	1.69
9429307--9429352	16	2.8	17	78	12	51	63	0	13	23	1.30
9434323--9434391	21	3.3	21	66	8	59	18	26	17	37	1.93
9434323--9434442	42	2.9	42	85	5	145	16	25	18	40	1.91
9435438--9435463	12	2.2	12	100	0	52	23	0	7	69	1.14
9435447--9435507	24	2.5	25	81	5	72	29	0	4	65	1.13
9439694--9439741	23	2.2	21	81	7	51	31	6	12	50	1.65
9439829--9439864	3	12.0	3	100	0	72	33	0	0	66	0.92
9442632--9442944	52	6.5	50	81	13	370	34	15	22	28	1.94
9442632--9442944	96	3.2	96	92	4	515	34	15	22	28	1.94
9442644--9442944	44	6.4	45	84	10	365	34	14	21	28	1.94
9442910--9443046	35	4.0	35	87	8	194	35	17	22	24	1.95
9442910--9443046	68	2.0	68	90	5	215	35	17	22	24	1.95
9456517--9456697	90	2.0	90	100	0	362	21	15	24	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9462661--9462846	46	4.0	46	87	2	239	31	25	6	36	1.83
9462770--9462844	24	3.2	24	64	27	61	29	30	6	33	1.83
9464231--9464285	26	2.1	26	90	6	85	18	20	18	43	1.88
9466490--9466516	12	2.2	12	100	0	54	70	0	0	29	0.88
9473385--9473562	61	3.0	60	72	16	161	43	1	3	51	1.28
9473477--9473535	26	2.3	25	85	8	82	40	0	1	57	1.09
9473490--9473545	15	4.0	15	73	17	57	44	0	0	55	0.99
9473516--9473584	22	3.3	22	69	22	67	43	2	0	53	1.15
9473462--9473601	17	8.6	17	67	23	61	45	1	0	52	1.14
9473829--9473880	16	3.2	16	88	0	86	34	36	0	28	1.58
9476614--9478083	366	4.0	366	89	2	2154	36	17	15	31	1.91
9479117--9479395	71	4.0	71	88	2	397	26	19	9	44	1.81
9479598--9479622	7	3.6	7	100	0	50	32	0	12	56	1.36
9482432--9482456	12	2.1	12	100	0	50	84	0	16	0	0.63
9483145--9484240	365	3.0	365	89	2	1689	36	16	15	31	1.90
9486742--9486787	23	2.0	23	100	0	92	47	13	4	34	1.62
9489676--9489711	18	2.0	18	88	0	54	36	8	25	30	1.85
9490562--9490681	47	2.6	47	86	1	170	53	11	10	25	1.68
9490484--9490770	115	2.5	114	86	3	405	52	12	8	26	1.67
9490656--9490698	21	2.0	21	90	0	68	51	13	9	25	1.71
9490609--9490743	68	2.0	68	92	0	225	51	12	8	27	1.69
9490677--9490769	47	2.0	47	86	0	132	53	11	8	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9490736--9490803	33	2.1	33	85	0	91	52	11	8	26	1.67
9490694--9490850	80	2.0	80	88	2	235	52	12	10	24	1.70
9490783--9490876	47	1.9	47	87	8	134	53	12	9	24	1.68
9490579--9490952	199	1.9	195	87	4	554	52	12	9	25	1.69
9490876--9491050	53	3.5	49	82	7	185	49	10	12	28	1.72
9490905--9491060	50	3.0	53	85	3	212	50	7	13	28	1.69
9491576--9491627	18	2.9	17	77	11	50	28	0	1	69	0.99
9491658--9491700	17	2.5	17	80	3	50	30	2	2	65	1.18
9502697--9502962	131	2.0	131	99	0	523	33	13	15	37	1.87
9503907--9503952	23	2.0	23	100	0	92	56	17	8	17	1.65
9509181--9509243	32	1.9	33	81	9	76	66	3	4	25	1.26
9509191--9509250	16	3.8	16	75	14	52	65	3	3	28	1.25
9530323--9530348	13	2.0	13	100	0	52	38	7	0	53	1.30
9536695--9536763	30	2.3	30	82	0	75	28	23	21	26	1.99
9540401--9540444	19	2.3	20	84	7	56	27	20	11	40	1.86
9544556--9544905	86	4.1	86	93	0	556	26	22	24	26	2.00
9544610--9544830	42	5.2	42	60	20	98	26	24	23	24	2.00
9544931--9545124	45	4.3	45	65	11	108	26	19	24	29	1.99
9544961--9545140	46	4.0	46	68	11	145	26	19	24	30	1.98
9544863--9545147	136	2.1	134	94	1	489	25	20	23	29	1.99
9545132--9545996	177	4.9	177	95	0	1509	27	16	26	29	1.97
9545126--9545996	44	19.7	45	82	3	980	28	16	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9555996--9556055	31	1.9	31	86	0	84	35	8	11	45	1.71
9566151--9566195	14	2.9	15	84	12	56	53	0	0	46	1.00
9566837--9566866	14	2.1	14	100	0	60	46	20	13	20	1.83
9576325--9576410	29	3.1	26	74	21	77	37	0	3	59	1.15
9576342--9576379	20	1.9	20	84	10	51	42	0	0	57	0.98
9577484--9577527	23	1.9	23	85	0	61	63	2	0	34	1.07
9577936--9577972	12	3.5	11	79	20	51	37	0	0	62	0.96
9581102--9581144	21	2.0	21	100	0	86	27	13	0	58	1.37
9605017--9605049	17	2.0	17	88	5	50	24	0	15	60	1.35
9605321--9605377	29	1.9	30	85	7	80	56	5	0	38	1.22
9607313--9607364	18	2.9	17	83	11	59	55	1	0	42	1.10
9608354--9608405	3	17.0	3	77	18	54	32	1	3	61	1.25
9608354--9608390	14	2.6	14	91	0	56	29	2	5	62	1.31
9608326--9608405	22	3.7	22	77	12	76	31	2	5	61	1.31
9608354--9608401	11	3.8	13	84	15	50	33	2	4	60	1.27
9608351--9608417	8	7.8	8	77	22	57	32	4	2	59	1.32
9613864--9613891	3	9.3	3	100	0	56	35	0	0	64	0.94
9623778--9623850	37	1.9	39	83	5	96	38	4	4	53	1.39
9623824--9623864	16	2.5	16	92	4	64	39	2	4	53	1.35
9626958--9627030	37	2.0	37	100	0	146	41	2	12	43	1.56
9628269--9628494	58	4.0	58	93	3	372	29	13	15	41	1.85
9651823--9651973	82	1.8	82	84	2	205	35	9	9	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9652514--9652556	20	2.0	20	82	8	50	41	4	4	48	1.44
9652712--9652741	6	5.0	6	95	0	51	33	3	0	63	1.11
9663779--9663816	20	1.9	20	84	10	51	44	7	0	47	1.32
9665480--9665516	13	2.8	14	80	16	51	32	0	5	62	1.18
9665613--9665692	26	3.2	25	71	15	74	53	6	1	38	1.34
9666549--9666633	26	3.3	25	69	18	75	42	3	7	47	1.48
9666526--9666633	52	2.1	52	96	0	198	42	2	8	46	1.48
9669045--9669247	45	4.4	46	82	9	243	39	18	20	21	1.92
9669137--9669163	6	4.5	6	100	0	54	48	14	18	18	1.82
9669092--9669247	51	3.2	51	84	10	234	40	19	20	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208