genome.fa.s18.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  173  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55279005--55279154	51	2.9	51	76	3	158	30	14	24	31	1.95
55279171--55279552	130	2.9	131	82	4	391	30	19	21	28	1.97
55279172--55279640	173	2.7	171	83	5	514	30	18	21	28	1.97
55279172--55279555	44	8.8	44	74	11	263	30	19	21	28	1.97
55279217--55279585	129	2.9	129	81	6	313	30	19	20	29	1.97
55279162--55279738	173	3.3	173	80	4	432	32	18	20	28	1.96
55281305--55281352	19	2.6	18	78	15	53	47	2	0	50	1.12
55281302--55281362	16	4.0	15	72	10	52	47	3	0	49	1.18
55284123--55284160	17	2.2	17	86	9	51	42	0	0	57	0.98
55287938--55287974	2	18.5	2	94	0	65	45	0	0	54	1.00
55289292--55289339	24	2.0	24	95	0	87	52	8	18	20	1.71
55290058--55290098	21	2.0	21	90	0	64	31	9	2	56	1.45
55290166--55290215	21	2.4	21	74	9	50	32	6	2	60	1.32
55292184--55292218	16	2.2	16	94	0	61	17	14	22	45	1.84
55296391--55296426	5	7.2	5	100	0	72	19	0	0	80	0.71
55297162--55297223	28	2.3	27	82	2	70	33	11	8	46	1.69
55300803--55300874	36	2.0	35	81	7	83	58	9	2	29	1.44
55300894--55300979	24	3.7	24	75	17	67	46	2	9	41	1.48
55300943--55301023	22	3.6	22	80	9	101	54	1	6	38	1.33
55303033--55303089	28	2.0	28	100	0	114	47	24	10	17	1.79
55304951--55304986	3	12.0	3	100	0	72	33	0	0	66	0.92
55305144--55305177	16	2.2	15	89	5	50	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55305466--55305506	5	8.2	5	83	0	55	17	2	4	75	1.08
55305544--55305591	24	2.0	24	84	8	62	29	2	6	62	1.31
55306890--55306924	16	2.2	16	94	0	61	25	11	20	42	1.85
55309667--55309701	11	3.2	11	87	0	52	85	0	0	14	0.59
55311488--55312541	88	12.0	88	88	2	1242	26	19	26	27	1.99
55311711--55311849	44	3.2	43	64	19	106	24	19	23	32	1.98
55311755--55311893	44	3.2	44	65	15	115	26	15	25	31	1.96
55311887--55312113	44	5.2	44	65	6	145	25	20	25	28	1.99
55312839--55313151	127	2.5	125	86	3	401	33	17	21	27	1.96
55314427--55314501	3	25.0	3	81	10	91	33	0	2	64	1.08
55319025--55319058	9	3.9	9	84	7	52	44	0	2	52	1.16
55323063--55323287	112	2.0	112	94	1	398	39	14	4	42	1.65
55336732--55336777	15	2.9	15	83	6	56	84	6	2	6	0.84
55337637--55338784	77	15.0	77	83	4	1243	27	17	20	34	1.96
55338979--55339115	29	4.7	30	86	4	190	34	24	3	37	1.73
55340639--55340664	7	3.7	7	100	0	52	73	0	0	26	0.84
55342690--55342735	21	2.1	21	84	4	56	39	4	6	50	1.48
55342752--55343025	96	2.8	96	80	12	258	45	12	9	32	1.74
55342848--55343064	35	6.2	35	76	10	144	44	11	11	31	1.78
55342713--55343229	17	29.9	17	71	19	233	44	11	11	33	1.76
55342860--55343094	54	4.4	55	72	17	167	42	11	11	34	1.78
55342965--55343172	74	2.8	74	79	8	212	42	10	12	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55343165--55343218	16	3.2	16	75	14	56	40	9	14	35	1.78
55343381--55343431	17	3.0	16	77	11	57	72	1	0	25	0.95
55343560--55343618	8	6.7	9	82	9	61	0	15	1	83	0.74
55343560--55343617	18	3.4	17	80	9	73	0	15	1	82	0.74
55343560--55343620	16	3.7	16	82	8	70	0	14	1	83	0.72
55343738--55343782	23	2.0	23	100	0	90	0	26	4	68	1.08
55343739--55343790	23	2.5	20	87	9	59	1	25	5	67	1.23
55343908--55343978	17	4.0	18	80	14	60	0	29	0	70	0.88
55343909--55343979	3	23.0	3	78	13	65	0	30	0	69	0.89
55343918--55343975	28	2.1	28	83	6	73	0	31	0	68	0.89
55343948--55343976	10	2.9	10	100	0	58	0	37	0	62	0.96
55343910--55343976	34	2.0	34	85	5	91	0	31	0	68	0.90
55344035--55344084	10	5.2	10	80	7	59	0	30	0	70	0.88
55344039--55344081	19	2.3	19	88	11	63	0	30	0	69	0.88
55344332--55344448	30	3.9	29	77	11	94	44	3	22	29	1.69
55344347--55344448	30	3.4	30	84	2	134	44	3	22	29	1.71
55344720--55345461	54	14.0	54	91	6	1182	37	17	15	28	1.91
55344720--55345454	313	2.3	312	93	5	1226	37	18	15	28	1.91
55345409--55346026	72	8.5	72	94	1	1022	33	18	16	31	1.93
55345409--55346026	215	2.8	216	92	1	1015	33	18	16	31	1.93
55345409--55346026	143	4.3	144	93	1	1013	33	18	16	31	1.93
55346023--55346057	17	2.1	17	88	0	52	65	5	11	17	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55346041--55346353	123	2.6	116	89	6	464	35	21	14	27	1.93
55354603--55355111	17	29.8	17	71	12	287	44	11	11	32	1.77
55354746--55355054	70	4.4	71	77	11	203	43	11	12	33	1.77
55355047--55355100	16	3.2	16	75	14	56	40	9	14	35	1.78
55355262--55355312	17	3.0	16	77	11	57	72	1	0	25	0.95
55355441--55355494	17	3.3	16	85	12	74	0	16	1	81	0.78
55355450--55355494	16	2.9	15	83	9	63	0	17	0	82	0.68
55355614--55355658	23	2.0	23	100	0	90	0	26	4	68	1.08
55355615--55355675	23	3.0	20	85	9	61	1	22	4	70	1.15
55355794--55355853	24	2.5	24	86	7	79	0	33	0	66	0.92
55355782--55355853	3	24.0	3	78	16	62	0	30	0	69	0.89
55355805--55355853	13	3.9	13	75	24	52	0	36	0	63	0.95
55355822--55355850	10	2.9	10	100	0	58	0	37	0	62	0.96
55355909--55355958	10	5.2	10	80	7	59	0	30	0	70	0.88
55355913--55355955	19	2.3	19	88	11	63	0	30	0	69	0.88
55356203--55356319	30	3.9	29	77	11	94	44	3	22	29	1.69
55356218--55356319	30	3.4	30	84	2	134	44	3	22	29	1.71
55359016--55359053	20	1.9	20	94	0	67	28	0	7	63	1.23
55359013--55359063	20	2.5	20	80	0	66	37	0	7	54	1.29
55359062--55359103	22	2.0	21	90	4	66	33	0	2	64	1.07
55363386--55363426	21	2.0	21	90	0	64	19	29	21	29	1.98
55368447--55368492	19	2.3	19	88	7	65	60	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55371957--55372021	25	2.6	25	87	0	94	23	30	13	32	1.93
55375401--55375433	6	5.5	6	92	0	57	45	0	36	18	1.49
55381040--55381087	20	2.4	20	89	0	69	16	29	20	33	1.95
55381040--55381097	20	2.9	20	84	0	62	13	29	20	36	1.91
55384000--55384231	33	7.0	33	76	5	171	27	6	22	43	1.78
55384004--55384231	17	13.7	17	75	8	173	27	6	22	43	1.78
55384005--55384241	50	4.7	51	78	7	227	26	6	22	43	1.78
55383997--55384197	83	2.4	83	82	7	246	26	6	23	43	1.78
55384350--55384404	26	2.1	26	89	0	83	25	16	25	32	1.96
55390432--55390502	10	7.3	10	80	4	56	35	7	0	57	1.26
55390432--55390501	20	3.5	20	76	3	79	35	7	0	57	1.26
55397691--55397739	20	2.4	19	80	12	53	59	24	4	12	1.50
55403954--55404002	20	2.4	19	80	12	53	59	24	4	12	1.50
55404210--55404247	3	12.7	3	94	0	67	2	0	28	68	1.03
55407804--55407855	27	1.9	27	96	0	95	23	30	25	21	1.99
55416068--55416140	29	2.5	29	86	6	94	46	17	13	21	1.83
55418052--55418170	30	3.9	31	84	6	138	31	22	4	41	1.73
55418365--55418415	20	2.5	20	87	3	66	64	0	35	0	0.94
55418365--55418422	20	2.8	20	80	12	64	63	0	36	0	0.94
55418492--55418572	16	4.6	18	75	18	64	71	0	28	0	0.86
55418514--55418569	21	2.7	22	81	8	73	75	0	25	0	0.81
55418495--55418568	24	3.2	24	72	20	77	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55418505--55418571	30	2.2	29	81	5	80	74	0	25	0	0.82
55418755--55418851	41	2.4	41	94	0	167	30	44	22	2	1.64
55418850--55418894	15	3.1	15	84	12	58	40	31	26	2	1.68
55418850--55418890	14	2.7	15	85	11	57	34	34	29	2	1.71
55418894--55418974	17	5.0	16	77	14	69	81	0	17	1	0.76
55418892--55418972	19	4.4	18	82	14	94	82	0	16	1	0.73
55418913--55418961	9	5.9	8	82	17	64	85	0	12	2	0.68
55418892--55418974	27	3.0	28	82	8	107	81	0	16	1	0.75
55419342--55419381	21	2.0	21	90	5	64	30	17	10	42	1.82
55419488--55419779	17	16.5	17	71	10	194	29	12	8	48	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208