genome.fa.s18.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  16  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6422444--6422485	19	2.3	19	87	4	59	59	0	7	33	1.25
6423661--6423686	2	13.0	2	100	0	52	0	50	0	50	1.00
6427375--6427401	3	9.0	3	100	0	54	33	33	0	33	1.58
6434038--6434100	30	2.1	30	84	0	81	57	12	3	26	1.51
6434731--6434778	21	2.2	23	88	7	73	12	4	14	68	1.34
6437410--6437789	189	2.0	189	97	0	724	26	12	21	39	1.89
6451609--6451996	46	8.6	46	85	10	498	33	14	22	29	1.94
6451789--6451861	36	2.0	36	91	0	119	35	13	20	30	1.91
6451743--6451996	82	3.0	81	83	10	314	33	15	22	29	1.95
6451697--6451953	128	2.0	128	92	0	424	33	14	21	29	1.94
6451645--6451996	174	2.0	174	89	4	539	33	15	22	28	1.94
6461372--6461415	19	2.3	20	84	7	56	27	20	11	40	1.86
6465653--6465981	46	7.4	46	62	16	154	26	20	23	29	1.99
6465545--6466109	133	4.2	134	94	0	929	27	20	23	29	1.98
6465545--6466130	267	2.2	267	91	1	946	27	19	23	29	1.98
6466075--6466802	44	16.6	45	77	4	635	27	16	26	29	1.97
6466083--6466797	132	5.4	132	93	1	1157	27	16	26	29	1.97
6466974--6467286	40	7.7	40	77	9	283	30	26	20	23	1.99
6466963--6467289	122	2.7	122	75	11	290	31	25	20	22	1.98
6466963--6467305	82	4.2	82	92	1	508	32	26	19	21	1.97
6475979--6476009	16	1.9	16	93	0	53	74	6	9	9	1.23
6479506--6479645	31	4.5	31	74	15	137	23	16	12	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6480143--6480197	28	2.0	28	81	0	65	49	9	18	23	1.76
6480090--6480219	59	2.2	59	79	4	145	46	14	15	23	1.83
6490843--6490875	17	1.9	18	88	11	52	45	3	0	51	1.16
6501122--6501158	16	2.3	16	100	0	74	37	5	35	21	1.77
6501391--6501425	18	2.0	17	88	5	52	54	0	0	45	0.99
6501528--6501786	47	5.7	46	70	19	193	47	2	3	46	1.32
6501562--6501824	91	2.9	91	97	0	490	47	2	3	47	1.32
6515385--6515698	154	2.0	154	98	0	601	41	21	14	22	1.90
6521734--6521781	2	24.0	2	100	0	96	50	0	50	0	1.00
6526776--6526831	23	2.5	22	82	5	67	67	1	0	30	1.01
6526786--6526824	15	2.6	14	80	11	51	69	2	0	28	1.02
6532588--6532629	15	2.9	15	82	10	52	69	0	0	30	0.89
6533586--6533628	21	2.1	20	91	4	68	37	6	0	55	1.27
6534772--6534800	14	2.1	14	100	0	58	27	0	0	72	0.85
6547288--6547319	16	2.0	16	93	0	55	34	25	9	31	1.87
6549340--6549373	3	11.3	3	87	0	50	32	5	32	29	1.81
6556432--6556463	16	2.0	16	100	0	64	43	12	18	25	1.85
6558736--6558779	5	8.6	5	95	5	79	40	0	0	59	0.98
6558850--6558878	12	2.3	13	94	5	51	72	0	20	6	1.07
6559694--6559825	40	3.4	39	76	7	124	25	18	25	31	1.98
6566247--6566275	7	4.1	7	100	0	58	13	13	72	0	1.13
6582341--6582540	96	2.1	96	82	5	244	39	2	17	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6583214--6583406	58	3.3	61	73	12	222	45	5	5	44	1.48
6583406--6583484	34	2.3	35	93	4	133	51	5	5	37	1.46
6583994--6584054	30	2.0	30	83	0	77	4	16	47	31	1.68
6584551--6584576	7	3.7	7	100	0	52	57	15	0	26	1.38
6585623--6585692	11	6.4	11	74	12	72	44	0	32	22	1.53
6585623--6585695	23	3.3	21	87	9	101	46	0	31	21	1.52
6603647--6603686	15	2.4	17	88	12	57	77	0	22	0	0.77
6612022--6612069	25	1.9	25	83	8	62	37	25	8	29	1.85
6619642--6619737	31	3.1	31	90	3	156	45	12	8	33	1.72
6620300--6620325	12	2.2	12	100	0	52	34	0	34	30	1.58
6622087--6622121	3	11.7	3	100	0	70	68	0	31	0	0.90
6634357--6634389	16	2.1	16	100	0	66	24	12	24	39	1.89
6646508--6646557	26	1.9	26	91	0	82	34	10	26	30	1.89
6647961--6647998	11	3.5	11	85	0	58	47	0	0	52	1.00
6661164--6661199	18	1.9	18	88	5	54	30	0	2	66	1.06
6661149--6661211	19	3.1	19	77	17	56	31	0	3	65	1.09
6664731--6664791	31	2.0	31	83	6	79	37	6	3	52	1.44
6668047--6668088	19	2.2	19	83	8	50	33	0	2	64	1.07
6668448--6668489	19	2.2	19	83	8	50	33	2	2	61	1.21
6672122--6672169	21	2.2	20	79	13	51	25	4	2	68	1.18
6675326--6675433	51	2.1	51	91	3	182	33	17	22	26	1.96
6675409--6675455	23	2.0	23	91	0	76	36	17	17	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6675432--6675552	44	2.8	44	84	2	163	33	14	20	31	1.92
6675324--6675530	118	1.8	114	86	9	305	32	16	20	30	1.95
6688236--6688279	22	2.0	22	90	0	70	47	6	6	38	1.57
6691014--6691044	3	10.3	3	92	0	53	32	38	0	29	1.57
6695576--6696211	318	2.0	318	98	0	1218	41	16	14	27	1.88
6718811--6718888	16	5.0	17	75	19	80	62	1	1	34	1.11
6718835--6718889	17	3.3	17	79	5	58	63	1	1	32	1.15
6718814--6718902	45	2.0	44	86	10	126	62	1	2	33	1.15
6718769--6718936	40	3.9	39	76	18	140	61	1	1	35	1.17
6720366--6720533	87	1.9	87	98	0	327	32	7	30	30	1.84
6731181--6731215	6	5.7	6	89	3	52	2	31	0	65	1.07
6738926--6739638	357	2.0	357	99	0	1417	27	15	16	40	1.88
6750625--6750652	6	4.7	6	100	0	56	50	0	14	35	1.43
6751345--6751374	14	2.1	14	93	0	51	46	0	6	46	1.29
6751446--6751520	35	2.2	34	83	11	91	45	9	9	36	1.69
6754291--6754315	6	4.2	6	100	0	50	52	32	16	0	1.44
6756765--6756832	33	2.1	33	100	0	136	32	2	19	45	1.65
6757097--6757133	16	2.3	16	90	0	56	59	0	16	24	1.37
6776886--6776927	20	2.1	20	86	0	57	47	0	7	45	1.30
6778954--6778983	11	2.7	11	89	0	51	16	0	23	60	1.36
6790383--6790445	31	2.0	31	93	0	108	36	1	7	53	1.40
6793951--6793991	3	13.7	3	94	0	73	34	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6809484--6809728	124	2.0	124	98	0	472	45	15	11	26	1.81
6812199--6812291	41	2.4	39	86	11	138	41	18	12	26	1.86
6812214--6812296	41	2.0	41	100	0	166	38	21	12	27	1.89
6817917--6817950	18	1.9	18	88	5	52	41	2	0	55	1.15
6825687--6825731	20	2.2	20	84	7	56	64	6	26	2	1.30
6831545--6831583	3	12.7	3	89	5	60	33	0	0	66	0.92
6835158--6835219	25	2.4	26	81	5	81	43	3	8	45	1.49
6841175--6841238	32	2.0	32	93	0	110	40	3	3	53	1.33
6841355--6841390	17	2.1	18	89	5	56	58	5	5	30	1.44
6846923--6846987	25	2.6	25	80	2	78	30	20	26	23	1.98
6848204--6848327	64	1.9	64	85	0	167	37	21	17	23	1.94
6852371--6852404	15	2.2	16	94	5	61	50	11	14	23	1.76
6856477--6856710	118	2.0	116	88	3	344	44	7	14	33	1.73
6859333--6859402	21	3.3	21	77	13	81	61	0	1	37	1.05
6859334--6859392	11	5.4	11	78	13	68	59	0	1	38	1.08
6877981--6878010	9	3.3	9	90	0	51	26	10	20	43	1.83
6878152--6878212	20	3.2	19	81	6	70	57	4	1	36	1.30
6878152--6878215	19	3.4	19	78	8	69	56	4	1	37	1.30
6878223--6878275	21	2.4	22	75	12	54	62	1	0	35	1.06
6892550--6892584	14	2.4	14	90	4	52	74	5	14	5	1.19
6893211--6893378	83	2.0	84	92	1	284	51	7	15	25	1.70
6901922--6902070	36	4.1	36	92	1	226	42	10	18	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6903703--6903731	13	2.1	14	93	6	51	55	6	0	37	1.27
6903702--6903734	14	2.3	15	85	15	52	54	6	0	39	1.25
6904707--6904837	57	2.4	54	81	10	149	34	19	14	32	1.92
6925628--6925686	9	6.3	9	74	14	57	64	3	0	32	1.10
6926004--6926049	23	1.9	25	82	8	60	41	0	6	52	1.27
6928159--6928199	17	2.4	18	80	12	50	53	4	7	34	1.50
6938041--6938270	37	6.0	37	87	9	320	25	21	15	36	1.93
6938187--6938455	46	5.6	46	85	10	349	28	22	14	34	1.93
6938230--6938449	52	4.3	52	86	8	308	27	23	14	35	1.93
6938187--6938455	98	2.7	98	94	0	466	28	22	14	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208