genome.fa.s18.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  150  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48717298--48717350	23	2.4	22	76	20	56	9	18	1	69	1.25
48721815--48721867	25	2.1	25	85	0	70	20	32	16	30	1.95
48722243--48722289	13	3.4	14	83	16	55	21	2	4	72	1.12
48724390--48724475	41	2.1	42	84	2	111	13	31	30	24	1.94
48727910--48728116	46	4.6	46	91	3	332	28	23	14	32	1.94
48727910--48728116	91	2.3	91	94	1	364	28	23	14	32	1.94
48734426--48734457	8	4.0	8	95	0	55	12	0	15	71	1.14
48736891--48736916	5	5.2	5	100	0	52	0	42	57	0	0.98
48737328--48737370	21	2.0	21	82	8	52	37	0	6	55	1.27
48737356--48737466	53	2.1	52	80	9	118	44	0	5	49	1.31
48737661--48737698	16	2.4	16	95	0	67	28	31	2	36	1.71
48739038--48739077	20	2.0	20	86	13	57	40	35	5	20	1.74
48746658--48746772	41	2.8	41	86	0	149	27	18	23	30	1.97
48747795--48747887	40	2.3	40	83	1	114	32	22	22	22	1.98
48747813--48747949	40	3.5	40	75	7	118	37	21	20	20	1.94
48747982--48748162	41	4.4	40	86	6	222	19	22	27	30	1.98
48747982--48748162	81	2.2	82	84	9	237	19	22	27	30	1.98
48748269--48748358	33	2.9	31	67	23	73	61	3	4	31	1.32
48748269--48748364	31	3.2	29	70	21	97	62	3	4	30	1.29
48748587--48748619	14	2.3	15	94	5	59	30	0	33	36	1.58
48748847--48748906	21	2.8	22	87	7	88	31	0	36	31	1.58
48748847--48748916	21	3.3	21	83	2	86	30	0	37	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48749031--48749060	15	1.9	16	93	6	53	20	3	40	36	1.69
48753417--48753606	42	4.5	42	88	3	258	21	17	28	32	1.96
48757816--48757912	31	3.1	31	84	0	131	29	20	5	44	1.73
48760328--48760392	32	2.0	32	81	0	76	47	1	13	36	1.53
48760849--48760878	7	4.1	7	95	4	51	56	0	0	43	0.99
48766692--48766722	15	2.1	14	94	5	53	51	0	0	48	1.00
48778798--48778844	10	4.5	10	82	12	51	40	4	0	55	1.19
48778799--48778839	12	3.6	12	93	6	68	43	4	0	51	1.23
48785631--48785663	14	2.4	14	90	10	50	18	0	9	72	1.10
48790409--48790464	22	2.5	22	94	0	94	41	19	23	16	1.90
48790954--48790985	16	1.9	17	93	6	57	3	18	3	75	1.08
48795415--48795553	41	3.5	41	79	9	128	33	20	19	27	1.96
48797199--48797319	43	2.8	43	82	5	154	23	27	30	18	1.98
48802887--48802931	23	2.0	23	95	0	81	26	20	8	44	1.80
48803243--48803597	72	4.9	72	74	5	281	34	5	13	45	1.68
48803343--48803479	73	1.9	73	84	0	184	35	6	13	45	1.69
48803879--48803916	19	2.0	20	89	5	60	26	0	5	68	1.11
48803961--48804003	13	3.1	14	83	12	54	34	2	0	62	1.08
48804468--48804534	35	1.9	35	90	0	107	47	10	5	35	1.62
48804553--48804678	9	14.6	9	76	11	59	49	14	0	36	1.44
48804560--48804613	24	2.2	24	100	0	108	53	11	0	35	1.36
48804554--48804705	36	4.4	36	87	5	206	50	14	0	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48810807--48810951	43	3.4	42	78	10	168	21	17	27	33	1.95
48814077--48814115	18	2.1	19	85	4	53	28	12	15	43	1.83
48814576--48814633	18	3.3	18	79	13	66	39	8	15	36	1.78
48815422--48815609	27	7.0	26	79	6	162	27	25	17	29	1.97
48822142--48822172	14	2.2	14	100	0	62	41	12	6	38	1.69
48822933--48822973	6	6.7	6	86	5	55	58	0	39	2	1.11
48822933--48822976	12	3.6	12	84	6	61	59	0	38	2	1.10
48832607--48832645	16	2.4	16	87	8	53	30	2	23	43	1.67
48839269--48839347	37	2.1	37	88	4	115	25	30	18	25	1.98
48839466--48840131	47	14.1	47	93	1	1035	27	29	9	32	1.89
48843836--48843974	40	3.5	40	77	7	115	22	27	25	25	2.00
48844286--48844364	29	2.7	29	86	5	106	27	32	15	24	1.95
48846270--48846348	37	2.1	37	86	4	106	26	30	17	25	1.97
48846467--48847179	47	15.1	47	94	0	1147	28	28	9	33	1.89
48846518--48846595	25	3.2	25	62	10	63	30	29	6	33	1.83
48854022--48854310	50	5.7	50	83	5	316	23	27	20	28	1.99
48855379--48855403	13	1.9	13	100	0	50	44	16	8	32	1.76
48856437--48856486	19	2.6	21	72	15	54	26	30	0	44	1.55
48858194--48858411	27	8.1	27	86	7	275	43	19	19	18	1.89
48858194--48858415	80	2.8	81	90	2	340	42	19	19	18	1.89
48858199--48858441	134	1.8	134	82	7	314	42	20	19	17	1.90
48858761--48858857	28	3.5	28	77	4	88	19	25	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48861603--48861636	17	2.0	17	94	0	59	47	26	0	26	1.53
48861895--48863269	656	2.1	655	87	2	1992	42	20	12	24	1.87
48863623--48865428	656	2.8	655	86	1	2397	41	20	13	24	1.88
48865419--48867763	656	3.6	655	86	2	3222	41	19	13	24	1.88
48868361--48868437	20	3.8	20	89	3	102	15	24	25	33	1.95
48875209--48876388	598	2.0	598	91	0	1896	22	14	21	41	1.89
48876470--48876549	32	2.5	32	87	4	117	18	23	40	17	1.91
48877710--48877751	12	3.5	12	75	12	50	33	0	42	23	1.55
48878452--48878786	27	12.5	26	80	9	313	43	20	17	19	1.88
48878456--48878757	81	3.7	81	86	3	376	44	20	17	18	1.87
48891126--48891183	29	2.0	30	89	3	91	27	3	13	55	1.55
48898493--48898781	50	5.7	50	82	3	294	26	20	29	23	1.99
48898496--48898781	149	1.9	153	80	6	339	26	20	29	23	1.99
48908298--48908330	15	2.1	16	88	5	50	6	18	3	72	1.18
48915427--48915689	40	6.7	40	88	6	351	25	21	27	25	1.99
48915427--48915722	120	2.5	117	81	9	327	26	20	27	25	1.99
48923417--48923576	39	4.1	40	83	8	195	26	22	26	24	2.00
48923557--48923596	20	2.0	20	100	0	80	25	15	20	40	1.90
48923517--48923637	60	2.0	60	100	0	242	24	18	24	32	1.97
48923577--48923740	40	4.1	40	92	1	267	25	19	26	29	1.99
48923478--48923676	100	2.0	99	94	1	344	25	19	25	29	1.98
48923583--48923773	80	2.4	80	87	4	253	27	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48947342--48947386	19	2.6	18	89	10	67	37	0	24	37	1.56
48947306--48947433	66	1.9	66	100	0	256	33	6	27	32	1.82
48947358--48947621	47	5.6	47	90	1	393	32	8	29	29	1.86
48947740--48947818	37	2.1	37	88	4	115	25	18	30	25	1.98
48967373--48967403	15	2.1	15	100	0	62	9	12	25	51	1.70
48969857--48969913	30	1.9	30	92	0	96	33	28	8	29	1.87
48982816--48982876	26	2.4	27	76	15	67	18	6	1	73	1.12
48986163--48986192	12	2.5	12	94	0	51	26	46	20	6	1.75
48990563--48990829	40	6.7	40	95	0	471	22	28	20	29	1.98
48999334--48999365	11	2.9	11	100	0	64	56	18	15	9	1.66
49002529--49002603	32	2.3	32	83	0	87	18	29	24	28	1.98
49013688--49013741	25	2.2	25	86	0	72	25	11	46	16	1.80
49015273--49015325	26	2.0	27	85	3	72	26	20	16	35	1.94
49019030--49019150	64	1.9	64	89	0	188	36	21	19	22	1.95
49019030--49019185	64	2.4	64	84	0	186	37	21	18	22	1.94
49019030--49019212	32	5.7	33	73	11	148	38	21	18	22	1.93
49019224--49019289	27	2.5	26	87	9	89	33	24	24	18	1.97
49019416--49019502	27	3.3	26	83	4	104	21	20	19	37	1.94
49019432--49019506	27	2.8	27	87	2	116	22	17	18	41	1.90
49021007--49021048	14	2.8	15	82	17	52	64	14	11	9	1.50
49023978--49024029	26	2.0	26	100	0	104	38	7	7	46	1.61
49024908--49024942	16	2.2	16	89	0	52	68	5	8	17	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49026068--49026119	26	2.0	26	96	0	95	44	11	3	40	1.59
49026069--49026133	26	2.7	24	86	11	73	41	10	3	44	1.55
49027502--49027553	26	2.0	26	100	0	104	38	11	7	42	1.70
49028830--49028876	24	1.9	25	82	4	60	36	4	25	34	1.76
49028032--49029289	627	2.0	626	94	0	2196	35	12	19	32	1.89
49030250--49030301	26	2.0	26	100	0	104	38	11	7	42	1.70
49033418--49033496	37	2.1	37	90	0	122	25	31	18	24	1.98
49033614--49034227	47	12.9	47	92	3	1016	29	30	8	31	1.87
49033614--49034227	143	4.3	141	93	3	1034	29	30	8	31	1.87
49033614--49034227	190	3.2	190	94	1	1070	29	30	8	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208