genome.fa.s18.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  162  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52537742--52537820	28	2.8	28	82	3	88	22	16	30	30	1.96
52542635--52544060	161	8.9	160	77	11	968	47	9	12	29	1.73
52543410--52544037	315	2.0	313	85	4	863	46	10	13	29	1.76
52544109--52544244	66	2.1	66	97	1	256	43	13	14	27	1.84
52544325--52544383	29	2.0	29	100	0	118	45	3	23	27	1.68
52550921--52551075	39	3.9	39	82	5	177	24	21	18	35	1.95
52550921--52551075	80	1.9	80	82	2	195	24	21	18	35	1.95
52557319--52557377	28	2.1	28	93	3	102	23	16	32	27	1.96
52557329--52557408	28	2.9	28	81	3	90	23	16	30	30	1.96
52562142--52563595	483	3.0	474	79	8	1395	47	9	12	29	1.74
52562787--52563595	162	5.0	163	82	8	911	46	10	13	29	1.76
52563644--52563779	66	2.1	66	97	1	256	43	13	14	27	1.84
52563860--52563918	29	2.0	29	100	0	118	45	3	23	27	1.68
52570217--52570364	38	3.9	39	76	11	137	27	22	18	31	1.97
52571635--52571688	25	2.1	27	83	13	69	59	3	0	37	1.15
52571665--52571702	18	2.1	18	85	9	51	57	2	0	39	1.12
52572762--52572865	40	2.6	40	82	0	127	36	23	18	22	1.95
52573172--52573208	19	1.9	19	88	0	56	27	5	18	48	1.70
52579046--52579099	28	1.9	28	100	0	108	27	24	3	44	1.70
52579184--52579318	65	2.1	65	95	2	245	28	14	13	43	1.83
52579366--52580161	161	5.0	159	81	9	860	30	13	10	46	1.76
52579715--52580810	161	6.9	159	72	16	626	30	12	9	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52580240--52580810	158	3.6	162	82	6	655	29	12	9	48	1.72
52585421--52585488	17	4.0	17	72	0	64	22	30	19	27	1.97
52585580--52585632	13	3.9	13	78	9	61	24	33	18	22	1.97
52585574--52585633	28	2.1	28	96	0	111	26	33	16	23	1.96
52585567--52585619	15	3.7	15	77	10	56	28	30	18	22	1.98
52590791--52590848	27	2.2	24	80	17	62	48	1	0	50	1.11
52591837--52591987	38	3.9	38	81	2	167	33	18	22	25	1.97
52598118--52598174	28	2.0	29	93	6	100	28	22	3	45	1.69
52598254--52598388	65	2.1	65	95	2	245	28	14	14	42	1.84
52598436--52599858	160	8.9	160	76	13	1040	29	12	9	47	1.74
52598454--52599241	161	4.9	160	82	8	872	29	13	10	46	1.76
52599321--52599898	162	3.6	163	84	4	704	29	12	9	48	1.72
52604535--52604602	17	4.0	17	72	0	64	22	30	19	27	1.97
52604681--52604733	15	3.7	15	77	10	56	28	30	18	22	1.98
52604688--52604746	28	2.1	28	93	3	102	27	32	16	23	1.96
52611045--52611203	40	4.0	40	85	1	201	35	18	21	25	1.95
52611045--52611218	81	2.1	81	82	2	206	36	19	20	22	1.95
52611533--52611571	20	2.0	20	89	0	60	25	5	17	51	1.66
52617763--52617821	29	2.0	29	100	0	118	27	23	3	45	1.68
52617902--52618037	66	2.1	65	97	1	254	27	14	13	43	1.84
52618438--52619552	164	6.9	163	77	12	944	29	12	9	48	1.73
52624202--52624269	17	4.0	17	72	0	64	22	30	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52624360--52624412	13	3.9	13	78	9	61	24	33	18	22	1.97
52624354--52624413	28	2.1	28	96	0	111	26	33	16	23	1.96
52624347--52624399	15	3.7	15	77	10	56	28	30	18	22	1.98
52630713--52630869	40	3.9	40	84	4	192	35	17	21	25	1.95
52630713--52630886	81	2.1	81	82	4	199	36	18	20	23	1.95
52631201--52631239	20	2.0	20	89	0	60	25	5	17	51	1.66
52637419--52637477	29	2.0	29	100	0	118	27	23	3	45	1.68
52637558--52637693	66	2.1	65	97	1	254	27	14	13	43	1.84
52637742--52639165	161	8.9	162	77	12	1163	30	13	9	47	1.74
52637773--52639205	315	4.5	318	77	13	1239	30	13	9	47	1.74
52638628--52639197	164	3.5	163	84	4	706	30	12	8	48	1.71
52643887--52643979	13	6.6	15	71	13	72	26	27	19	25	1.99
52643889--52643979	28	3.2	28	87	0	128	27	28	18	25	1.98
52649376--52649457	16	5.2	16	70	22	59	57	2	0	40	1.12
52649381--52649455	28	2.7	26	78	15	69	58	2	0	38	1.12
52649873--52649957	18	4.5	18	75	13	73	35	1	1	62	1.11
52649883--52649967	40	2.1	40	91	0	134	34	2	1	62	1.16
52649864--52649913	9	5.7	9	90	4	84	32	0	0	68	0.90
52650615--52650649	17	2.0	18	88	5	54	51	0	0	48	1.00
52650603--52650652	18	2.7	18	81	12	57	50	2	0	48	1.12
52650996--52651032	17	2.2	17	100	0	74	54	0	0	45	1.00
52653445--52653489	18	2.5	18	96	0	81	33	17	20	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52661647--52661686	11	3.6	11	93	6	64	22	35	0	42	1.54
52662900--52662924	7	3.6	7	100	0	50	28	0	12	60	1.32
52663567--52663604	18	2.1	18	95	0	67	23	28	7	39	1.83
52664035--52664148	25	4.9	24	72	16	96	38	0	14	45	1.52
52664153--52664189	9	4.2	9	96	3	67	29	0	10	59	1.31
52664013--52664172	68	2.3	67	85	4	239	38	0	13	47	1.47
52664220--52664651	23	19.8	23	80	10	392	47	25	0	25	1.57
52664216--52664696	44	11.1	44	85	8	571	47	27	0	25	1.57
52664220--52664695	67	7.3	67	84	9	544	47	26	0	25	1.57
52664488--52664518	14	2.2	14	100	0	62	58	19	0	22	1.40
52664421--52664651	81	2.8	80	88	9	277	49	25	0	25	1.51
52664787--52664856	17	3.9	17	72	15	61	44	5	1	48	1.35
52664729--52664970	114	2.1	115	92	1	396	41	8	6	44	1.59
52668091--52668124	18	1.9	18	88	5	52	55	0	5	38	1.24
52670807--52671183	125	3.0	125	91	1	596	32	22	14	29	1.94
52671589--52671704	60	1.9	59	84	8	155	26	18	10	44	1.81
52672214--52672329	31	3.9	30	77	13	123	53	11	6	28	1.62
52680310--52680349	21	1.9	21	94	0	71	2	47	17	32	1.61
52680245--52680404	87	1.8	87	86	2	223	14	28	15	41	1.86
52682189--52682248	20	3.0	20	75	4	57	40	35	3	21	1.70
52682612--52682963	134	2.6	131	82	8	417	33	22	13	31	1.92
52690795--52690859	21	3.0	21	88	8	96	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52695077--52695108	15	2.1	15	100	0	64	56	6	0	37	1.25
52705713--52705751	17	2.4	16	84	16	53	56	0	12	30	1.37
52706847--52706960	61	1.9	60	81	1	138	41	14	6	38	1.70
52707986--52708019	17	2.0	17	88	11	52	32	0	0	67	0.91
52710190--52710282	11	8.9	11	70	23	67	38	2	0	59	1.10
52710143--52710282	41	3.5	40	87	8	196	35	2	0	61	1.11
52710222--52710282	31	2.0	31	87	6	88	39	1	0	59	1.08
52710493--52710529	18	2.1	18	89	0	56	37	0	0	62	0.96
52715349--52715438	29	3.1	29	81	12	105	31	2	0	66	1.04
52715357--52715457	30	3.4	30	83	8	127	33	2	0	63	1.10
52733086--52733110	13	1.9	13	100	0	50	48	0	12	40	1.40
52733604--52733714	37	3.0	34	75	16	98	41	1	3	53	1.29
52733865--52733916	25	2.1	25	89	7	79	40	5	11	42	1.65
52746125--52746167	13	3.1	14	84	12	54	60	0	0	39	0.97
52752081--52752114	6	5.7	6	100	0	68	47	0	0	52	1.00
52752832--52752952	37	3.2	37	96	2	224	22	13	18	46	1.83
52753693--52753737	15	2.9	15	83	3	54	37	6	8	46	1.61
52755545--52755609	20	3.2	20	83	12	73	56	6	0	36	1.24
52755545--52755600	28	2.0	28	86	10	78	53	7	0	39	1.28
52761208--52761241	17	2.0	17	100	0	68	41	0	0	58	0.98
52761399--52761492	44	2.1	45	86	5	129	36	24	3	36	1.72
52761474--52761510	16	2.4	15	90	4	56	29	27	2	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52761474--52761512	15	2.5	16	91	4	62	28	28	5	38	1.78
52762134--52762186	27	1.9	27	81	11	63	30	0	7	62	1.23
52765802--52765922	43	2.8	43	77	12	113	32	28	19	19	1.96
52768597--52768646	3	16.7	3	76	15	50	34	2	2	62	1.18
52768615--52768646	16	2.0	16	93	0	55	31	3	0	65	1.08
52769307--52769338	12	2.7	12	95	0	55	18	9	0	71	1.12
52771225--52771268	19	2.3	20	84	7	56	27	20	11	40	1.86
52775615--52775921	88	3.5	88	87	1	411	26	22	26	25	2.00
52775678--52775901	44	5.1	43	65	12	141	26	23	25	24	2.00
52777447--52777498	3	17.7	3	76	11	54	34	1	1	61	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208