genome.fa.s18.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  15  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6013643--6013758	24	4.9	23	82	3	142	21	26	6	45	1.75
6013643--6013754	47	2.4	46	86	5	161	22	26	6	44	1.76
6029570--6029676	44	2.4	44	96	0	196	31	13	23	31	1.93
6034013--6034059	3	15.7	3	86	0	67	34	0	6	59	1.23
6034013--6034059	12	3.9	12	97	0	85	34	0	6	59	1.23
6051183--6051280	23	4.3	23	93	0	169	18	21	27	32	1.96
6056216--6056271	22	2.5	23	74	8	62	57	8	8	25	1.58
6062841--6062881	15	2.6	16	81	11	50	12	9	7	70	1.33
6063662--6063744	41	2.0	41	100	0	166	19	9	16	54	1.70
6081181--6081214	18	2.0	18	88	11	54	52	0	0	47	1.00
6083065--6083094	14	2.1	14	100	0	60	50	33	10	6	1.62
6088178--6088217	18	2.2	19	86	4	55	42	12	0	45	1.42
6092343--6092375	3	11.0	3	100	0	66	33	0	0	66	0.92
6096652--6096751	34	3.2	33	67	26	90	51	12	0	37	1.39
6096644--6096762	60	2.0	60	93	0	202	52	11	0	34	1.44
6096849--6096917	23	3.0	22	74	19	61	8	20	0	71	1.12
6096861--6096919	19	3.2	19	75	24	63	5	23	0	71	1.06
6097179--6097214	17	2.2	17	90	5	56	55	0	0	44	0.99
6101115--6101145	5	6.2	5	92	0	53	0	64	0	35	0.94
6117695--6117737	23	1.9	22	90	4	68	62	0	0	37	0.95
6117713--6117755	16	2.6	18	82	14	56	62	2	2	32	1.20
6121221--6121277	17	3.4	17	66	9	53	24	3	15	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6121208--6121277	34	2.1	34	100	0	140	25	2	17	54	1.57
6144921--6144961	20	2.0	20	90	4	64	73	2	24	0	0.96
6145389--6145501	37	2.9	39	77	9	131	26	16	22	34	1.95
6149795--6149845	20	2.4	21	83	9	68	35	0	3	60	1.15
6151434--6151634	25	8.2	24	73	10	140	18	25	20	35	1.95
6151542--6151621	24	3.3	23	82	6	97	17	27	21	33	1.96
6154491--6154516	12	2.2	12	100	0	52	42	0	7	50	1.31
6155145--6155286	41	3.5	41	90	0	203	25	21	26	26	2.00
6178508--6178572	30	2.2	30	97	0	121	10	15	18	55	1.68
6183409--6183617	92	2.3	91	85	5	260	45	4	3	46	1.39
6183545--6183592	26	1.9	25	84	16	64	45	0	2	52	1.12
6183671--6183893	66	3.6	61	69	21	171	42	2	5	49	1.39
6183633--6183925	120	2.4	120	92	3	466	43	2	4	49	1.37
6183758--6183809	15	3.6	15	80	12	56	44	0	1	53	1.11
6183862--6184171	157	2.0	157	95	0	557	47	4	3	45	1.39
6184031--6184065	18	2.0	17	88	5	52	45	0	0	54	0.99
6184304--6184334	16	1.9	16	100	0	62	38	25	0	35	1.56
6186990--6187027	19	2.0	19	94	0	67	13	10	52	23	1.71
6188599--6188656	27	2.2	26	84	3	71	36	22	22	18	1.95
6188728--6188797	19	3.7	19	82	3	97	37	10	0	52	1.35
6188733--6188803	37	1.9	37	100	0	142	39	11	0	49	1.39
6189113--6189153	19	2.1	19	86	4	55	53	2	9	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6189212--6189279	29	2.4	29	95	2	120	48	0	13	38	1.42
6189826--6189859	17	2.0	17	88	11	52	47	2	5	44	1.42
6197546--6197593	20	2.3	22	85	7	64	62	0	29	8	1.24
6197548--6197593	21	2.2	21	80	3	58	63	0	28	8	1.24
6197607--6197636	16	1.9	15	93	6	51	66	0	26	6	1.16
6203954--6204037	42	2.0	42	100	0	168	21	16	21	40	1.91
6206460--6206502	11	3.8	11	84	6	59	69	6	0	23	1.12
6211195--6211242	25	1.9	25	82	0	60	45	18	10	25	1.81
6216625--6216716	23	3.9	23	75	15	71	20	25	23	30	1.99
6216635--6216716	23	3.4	23	85	8	85	20	25	24	29	1.99
6219936--6219961	12	2.2	12	100	0	52	7	26	26	38	1.83
6220822--6220952	67	2.0	67	89	3	201	29	30	17	22	1.97
6224138--6224255	37	3.5	36	82	13	144	33	27	10	27	1.89
6224445--6224608	41	4.0	41	93	0	283	23	28	20	28	1.99
6224446--6224608	82	2.0	82	100	0	326	23	28	19	28	1.98
6224829--6224872	17	2.7	17	89	6	65	43	18	2	36	1.63
6229259--6229385	43	3.0	43	74	15	136	22	20	28	29	1.98
6229845--6229892	17	2.9	17	90	3	71	27	0	18	54	1.44
6231117--6231248	46	2.9	46	82	4	160	36	9	25	28	1.88
6235487--6235511	7	3.6	7	100	0	50	88	0	12	0	0.53
6238291--6238322	5	6.2	5	92	7	55	3	56	40	0	1.15
6238365--6238404	16	2.5	16	91	0	62	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6238337--6238389	22	2.4	22	87	0	70	52	1	1	43	1.23
6238415--6238554	59	2.4	59	97	0	262	39	4	10	46	1.57
6238536--6238563	9	3.1	9	100	0	56	32	0	10	57	1.33
6238660--6238705	24	1.9	24	91	8	76	60	2	0	36	1.09
6249130--6249156	3	9.0	3	100	0	54	33	0	0	66	0.92
6249294--6249396	32	3.4	31	74	15	81	35	5	2	55	1.39
6249311--6249390	36	2.2	36	80	8	92	36	6	2	55	1.39
6251673--6251716	19	2.3	20	84	7	56	27	20	11	40	1.86
6255994--6256245	87	2.9	85	83	4	326	28	21	24	25	1.99
6256066--6256193	43	2.9	44	69	14	120	25	20	25	28	1.99
6256260--6257057	44	17.8	43	66	13	211	31	20	21	26	1.98
6256346--6256835	87	5.5	88	70	11	262	30	20	22	26	1.98
6256478--6257064	229	2.6	229	93	1	991	32	20	20	26	1.97
6256783--6256886	54	1.9	54	90	0	163	38	18	16	26	1.92
6258630--6258656	3	9.0	3	100	0	54	33	0	0	66	0.92
6258794--6258896	32	3.4	31	74	15	81	35	5	2	55	1.39
6258811--6258890	36	2.2	36	80	8	92	36	6	2	55	1.39
6264492--6264538	20	2.2	22	77	11	53	65	8	8	17	1.44
6268172--6268203	3	10.7	3	93	0	55	3	62	0	34	1.11
6271665--6272071	101	4.0	101	83	3	514	29	23	14	32	1.95
6274706--6274758	25	2.2	24	89	3	79	35	22	24	16	1.95
6275060--6275118	23	2.6	22	89	2	91	45	23	3	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6275084--6275149	32	2.0	33	94	2	116	48	21	3	27	1.64
6292543--6292582	18	2.2	18	86	8	55	67	12	0	20	1.22
6292665--6292727	30	2.1	30	93	0	108	58	12	1	26	1.43
6294885--6294929	19	2.3	20	76	3	56	46	2	0	51	1.13
6301130--6301169	20	2.0	20	100	0	80	35	30	20	15	1.93
6315549--6315581	15	2.2	15	94	0	57	36	0	0	63	0.95
6316874--6316932	25	2.3	26	85	5	84	40	6	23	28	1.80
6317165--6317201	19	2.0	19	89	5	58	40	2	5	51	1.39
6317706--6317730	11	2.3	11	100	0	50	72	0	0	28	0.86
6318680--6318749	30	2.4	29	75	11	72	48	10	1	40	1.45
6318684--6318757	30	2.6	29	72	12	71	45	9	1	43	1.44
6321105--6321176	32	2.3	32	88	9	112	62	6	2	27	1.35
6321330--6321382	27	2.0	26	82	7	63	43	3	1	50	1.30
6321458--6321502	22	2.0	22	86	0	63	35	4	2	57	1.31
6334568--6334598	15	2.1	15	93	0	53	64	0	3	32	1.09
6340305--6340344	16	2.5	16	84	11	55	65	5	0	30	1.14
6351879--6351916	13	2.9	13	84	0	58	26	7	26	39	1.83
6358186--6358225	17	2.3	18	86	4	55	47	22	0	30	1.52
6362857--6362901	20	2.3	19	80	3	54	37	6	0	55	1.26
6364943--6365848	115	7.8	115	78	7	870	31	19	22	25	1.98
6365433--6365786	114	2.9	123	74	12	322	30	19	23	26	1.98
6365556--6365848	114	2.6	113	79	4	304	31	18	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6366207--6366250	14	3.1	14	83	0	52	15	0	45	38	1.47
6367060--6367243	83	2.2	86	79	6	198	28	17	20	33	1.96
6371209--6371474	43	6.2	43	85	1	320	29	18	27	24	1.98
6371464--6371530	28	2.4	28	100	0	134	31	20	26	20	1.98
6375412--6375500	20	4.7	19	73	8	83	34	3	1	60	1.20
6375465--6375530	20	3.4	19	75	10	53	31	3	1	63	1.19
6375596--6375777	86	2.1	87	84	4	235	40	6	15	37	1.72
6381151--6381211	20	3.0	21	64	22	56	32	24	14	27	1.95
6387633--6387904	134	2.0	134	97	0	517	31	12	17	37	1.88
6412867--6412897	2	15.5	2	93	0	53	0	48	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208