genome.fa.s18.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  94  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32069494--32069523	6	5.0	6	100	0	60	33	0	0	66	0.92
32071700--32071765	9	7.2	9	77	16	64	37	25	12	24	1.90
32071734--32071773	20	2.0	20	100	0	80	40	30	10	20	1.85
32071735--32071777	11	4.2	11	85	14	65	46	27	6	18	1.75
32073933--32073959	14	1.9	14	100	0	54	48	7	0	44	1.31
32074264--32074304	18	2.3	18	86	0	55	29	2	46	21	1.64
32074264--32074335	18	3.7	18	71	20	54	27	4	43	25	1.73
32075241--32075283	13	3.1	14	84	12	54	60	0	0	39	0.97
32077750--32077878	3	43.0	3	83	0	150	59	0	7	31	1.31
32082825--32083008	96	1.9	98	87	4	275	42	12	17	27	1.85
32085783--32085817	6	5.8	6	86	0	52	14	45	0	40	1.45
32085770--32085817	24	2.0	24	87	0	69	12	41	4	41	1.62
32090824--32090863	21	2.0	21	85	14	57	60	2	0	37	1.11
32092129--32092169	9	4.7	9	90	6	66	41	24	12	21	1.87
32092129--32092169	17	2.4	17	91	4	64	41	24	12	21	1.87
32094230--32094268	14	2.8	14	92	0	60	23	2	10	64	1.37
32094312--32094354	18	2.4	18	96	0	77	30	0	30	39	1.57
32094377--32094414	15	2.7	15	88	8	53	26	0	0	73	0.83
32097396--32097501	54	2.0	54	84	0	140	27	28	13	31	1.94
32097431--32097501	27	2.6	27	75	20	76	26	28	14	30	1.95
32097405--32097518	54	2.1	54	81	3	131	26	28	12	32	1.92
32109367--32109432	27	2.4	27	92	5	107	27	21	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32109367--32109451	27	3.1	27	84	3	82	27	21	17	34	1.96
32110939--32110981	18	2.5	17	76	3	50	34	0	2	62	1.08
32112046--32112075	9	3.3	9	90	0	51	86	0	0	13	0.57
32112045--32112076	15	2.1	15	94	5	55	81	0	0	18	0.70
32112266--32112339	36	2.1	36	100	0	148	32	5	13	48	1.65
32114078--32114231	27	5.7	27	84	5	154	32	18	15	33	1.92
32114505--32114572	34	2.1	32	91	5	109	26	23	25	25	2.00
32121138--32121258	20	6.3	18	77	13	86	66	1	3	28	1.16
32121158--32121234	20	3.9	20	81	11	88	67	1	3	27	1.16
32121462--32121529	34	2.0	34	88	0	100	33	2	2	60	1.27
32121505--32121545	17	2.4	17	87	4	55	41	2	0	56	1.13
32121544--32121585	19	2.3	18	80	15	50	35	2	2	59	1.23
32129371--32129403	16	2.1	16	88	11	50	33	3	0	63	1.10
32131647--32131785	42	3.2	43	78	5	129	26	15	25	32	1.96
32143066--32143467	135	3.0	135	94	1	686	31	12	15	40	1.85
32153515--32153546	9	3.6	9	100	0	64	12	0	9	78	0.97
32153597--32153648	23	2.3	23	90	6	79	34	13	9	42	1.77
32157973--32158004	9	3.6	9	100	0	64	12	0	9	78	0.97
32158054--32158105	23	2.3	23	90	6	79	34	13	9	42	1.77
32159813--32159857	24	2.0	22	86	8	63	17	17	4	60	1.53
32162930--32162981	22	2.2	25	83	10	65	71	5	15	7	1.29
32163049--32163095	21	2.2	22	77	11	53	63	0	29	6	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32169892--32169916	5	5.0	5	100	0	50	20	0	0	80	0.72
32172033--32172092	21	2.7	22	78	14	70	58	6	3	31	1.40
32175009--32175061	21	2.4	23	81	6	65	39	0	7	52	1.30
32177112--32177140	14	2.1	14	93	6	51	58	0	0	41	0.98
32182845--32183034	38	5.0	38	87	0	263	34	30	20	15	1.93
32184928--32185049	29	4.2	29	76	4	120	18	22	32	26	1.97
32184928--32185048	58	2.1	58	84	0	152	19	22	33	25	1.97
32188887--32188914	3	9.3	3	100	0	56	32	0	0	67	0.91
32190406--32190438	3	11.0	3	100	0	66	33	33	0	33	1.58
32191684--32191722	15	2.6	15	91	0	60	38	33	5	23	1.77
32192886--32192937	5	10.4	5	91	0	68	0	26	0	73	0.84
32192890--32192937	10	4.8	10	92	0	78	0	27	0	72	0.84
32192886--32192937	15	3.5	15	86	0	77	0	26	0	73	0.84
32193730--32193845	60	1.9	60	82	3	144	39	3	15	41	1.64
32193730--32193863	60	2.2	59	80	5	142	37	2	15	44	1.62
32196297--32196340	21	2.1	21	82	0	52	29	11	13	45	1.79
32197800--32197874	31	2.5	30	80	8	91	53	6	2	37	1.41
32197800--32197876	29	2.6	28	82	11	77	51	6	2	38	1.41
32204649--32204716	35	1.9	35	82	5	84	61	0	1	36	1.05
32220671--32220716	22	2.1	22	87	0	65	36	0	26	36	1.57
32232385--32232418	15	2.3	15	89	0	50	23	0	0	76	0.79
32233112--32233141	7	4.4	7	91	8	53	86	0	0	13	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32233112--32233141	13	2.2	14	94	5	53	86	0	0	13	0.57
32235562--32235665	48	2.2	48	96	0	190	37	2	5	53	1.40
32258447--32258472	13	2.0	13	100	0	52	53	0	23	23	1.46
32258601--32258625	8	3.1	8	100	0	50	12	24	0	64	1.27
32258803--32258998	51	3.9	50	79	4	223	30	28	17	23	1.97
32266897--32267001	41	2.6	41	84	6	124	25	26	20	27	1.99
32266937--32267022	41	2.1	41	89	4	129	29	24	17	29	1.97
32274041--32274169	43	3.0	43	81	4	152	31	27	18	22	1.97
32278438--32278553	41	2.8	40	78	6	126	32	27	18	20	1.97
32278599--32278751	64	2.3	67	85	6	197	41	15	8	34	1.78
32278780--32278904	60	2.1	60	82	5	146	42	15	4	38	1.65
32283300--32283777	83	5.6	84	75	12	383	22	21	23	31	1.98
32283214--32283690	210	2.2	210	83	5	568	23	20	23	32	1.98
32283324--32283802	44	11.2	44	74	13	236	22	22	22	31	1.99
32283323--32283778	127	3.6	127	80	7	437	23	21	23	31	1.98
32283796--32284220	44	9.6	45	71	9	257	28	23	19	28	1.99
32283929--32284221	134	2.2	135	91	1	482	27	23	20	27	1.99
32284282--32284395	44	2.6	44	81	1	131	26	24	23	25	2.00
32286593--32286697	6	17.5	6	83	13	65	11	12	3	72	1.25
32286597--32286715	18	6.9	18	71	18	67	12	10	5	70	1.32
32286664--32286697	6	5.7	6	100	0	68	14	14	0	70	1.17
32286583--32286726	78	1.8	77	86	5	209	11	12	5	70	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32294008--32294032	11	2.3	11	100	0	50	72	0	0	28	0.86
32294034--32294075	21	2.0	22	85	4	59	54	2	7	35	1.41
32302408--32302477	6	11.8	6	98	1	133	68	15	0	15	1.21
32306114--32306166	21	2.5	20	79	8	61	32	33	5	28	1.81
32307273--32307317	21	2.2	20	84	4	54	60	0	2	37	1.09
32313712--32313917	103	2.0	103	91	0	331	32	7	14	46	1.73
32314909--32314951	3	14.3	3	95	0	77	65	0	34	0	0.93
32317540--32317569	14	2.1	14	93	0	51	30	6	20	43	1.77
32317726--32317777	19	2.7	19	85	5	70	57	7	0	34	1.27
32317733--32317796	20	3.2	20	79	16	71	54	9	0	35	1.33
32317742--32317797	27	2.1	27	83	12	71	51	10	0	37	1.37
32323298--32323346	7	6.8	8	84	11	54	71	0	14	14	1.15
32323301--32323340	7	5.7	7	88	11	64	72	0	15	12	1.12
32323300--32323348	20	2.4	21	83	10	66	71	0	14	14	1.15
32323301--32323339	21	1.9	21	94	5	71	71	0	15	12	1.14
32324570--32325139	44	13.0	45	67	12	265	30	18	22	27	1.97
32324570--32325249	132	5.2	132	90	0	1015	31	18	22	27	1.97
32325228--32325460	44	5.3	44	88	3	344	28	12	25	33	1.93
32326085--32326130	22	2.1	22	91	0	74	8	52	21	17	1.71
32326088--32326141	22	2.5	22	84	0	63	9	50	24	16	1.74
32327400--32327455	23	2.5	23	85	5	80	28	14	3	53	1.57
32336005--32336073	3	24.0	3	79	8	63	34	7	0	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32335986--32336069	37	2.3	38	79	8	93	35	7	0	57	1.26
32340137--32340179	16	2.6	17	85	7	61	41	23	2	32	1.67
32340145--32340181	16	2.3	16	95	0	65	40	21	2	35	1.68
32341273--32341372	51	2.0	51	91	0	164	29	10	28	33	1.89
32352451--32352501	25	2.0	25	96	0	93	43	23	15	17	1.88
32358240--32358286	5	9.4	5	79	9	51	17	6	0	76	0.98
32362307--32362344	18	2.1	19	95	5	69	47	10	2	39	1.52
32366427--32366471	23	1.9	23	86	4	63	33	0	2	64	1.06
32366532--32366598	27	2.5	27	92	0	116	32	23	32	10	1.89
32366661--32366809	27	6.1	24	80	16	157	34	0	13	51	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208