genome.fa.s18.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  122  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40253188--40253234	20	2.3	20	79	13	60	44	2	0	53	1.12
40254209--40254330	51	2.4	51	86	2	174	30	23	1	44	1.63
40255104--40255133	14	2.1	14	100	0	60	20	20	33	26	1.97
40255450--40255481	7	4.6	7	100	0	64	28	0	12	59	1.34
40256131--40256170	18	2.2	18	95	0	71	22	30	5	42	1.75
40256595--40256642	25	1.9	25	87	8	71	43	0	18	37	1.51
40256603--40257135	212	2.5	212	96	1	978	38	0	12	48	1.44
40256603--40257135	71	7.5	71	96	0	980	38	0	12	48	1.44
40257133--40257266	23	5.8	23	91	0	223	43	21	7	27	1.79
40260518--40260877	123	2.9	123	92	2	589	33	21	16	29	1.95
40267270--40267312	20	2.2	20	91	0	68	41	13	20	23	1.88
40270210--40270418	114	1.8	113	93	1	364	23	21	27	27	1.99
40270322--40270459	73	1.9	73	93	0	240	25	23	24	26	2.00
40270210--40270609	187	2.1	186	89	3	599	24	23	27	25	2.00
40270314--40270477	73	2.2	73	85	0	238	23	23	27	25	2.00
40270395--40270771	114	3.3	114	89	2	560	25	22	25	26	2.00
40271016--40271060	14	3.1	14	84	12	56	22	0	40	37	1.54
40271034--40271064	14	2.2	14	100	0	62	29	0	32	38	1.57
40271316--40271356	14	2.9	14	88	3	55	29	2	34	34	1.71
40271345--40271431	35	2.4	36	82	3	104	26	1	36	35	1.64
40271736--40272326	235	2.4	231	88	9	766	48	12	12	26	1.77
40271865--40272079	107	2.0	106	88	4	317	50	11	11	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40271973--40272209	128	1.8	130	87	5	356	48	11	12	27	1.75
40272101--40272556	105	4.2	107	80	9	512	49	9	10	29	1.70
40272103--40272556	218	2.1	219	89	2	693	49	9	10	29	1.70
40275245--40275531	142	2.0	142	97	0	547	33	14	15	36	1.88
40276072--40276341	43	6.3	43	84	2	283	25	17	29	27	1.97
40276107--40276341	129	1.8	129	84	2	312	25	17	29	27	1.97
40278094--40278165	28	2.6	28	90	0	108	30	12	27	29	1.93
40280943--40280994	22	2.3	23	78	15	65	26	5	0	67	1.13
40281775--40281839	16	4.1	16	91	0	103	40	4	35	20	1.73
40281816--40281906	45	2.0	44	89	6	139	31	5	28	34	1.80
40282051--40282092	15	2.7	16	82	14	52	52	2	0	45	1.13
40282060--40282101	15	2.9	14	86	10	50	54	0	0	45	0.99
40282166--40282211	16	2.9	16	78	12	51	52	2	0	45	1.13
40282216--40282245	16	1.9	15	93	6	51	43	10	0	46	1.37
40282049--40282374	120	2.7	120	94	1	575	49	5	1	43	1.36
40282285--40282357	16	4.6	16	73	19	55	53	1	0	45	1.09
40282310--40282357	18	2.8	18	74	22	50	56	0	0	43	0.99
40288304--40288394	42	2.2	42	82	7	105	34	3	1	61	1.19
40291472--40291671	104	1.9	104	88	4	305	23	29	21	26	1.99
40291472--40291695	104	2.2	105	85	4	303	21	29	22	26	1.99
40293666--40293708	10	4.3	10	84	0	50	48	11	32	6	1.66
40294446--40294677	104	2.2	104	84	3	306	21	31	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40311119--40311421	143	2.1	143	86	1	428	30	20	20	29	1.97
40311963--40312000	19	2.0	20	89	5	60	50	39	0	10	1.37
40313381--40313437	20	2.8	19	84	5	60	19	3	12	64	1.40
40314203--40314242	19	2.2	18	86	4	53	40	2	0	57	1.12
40314288--40314321	17	2.0	17	88	0	50	50	0	2	47	1.16
40315010--40315058	19	2.5	20	80	9	57	53	0	2	44	1.12
40318354--40318405	23	2.3	22	75	21	54	9	23	1	65	1.32
40322971--40323011	21	1.9	22	85	14	59	60	2	0	36	1.10
40345184--40345487	140	2.2	140	91	4	495	30	21	21	26	1.98
40345769--40345821	23	2.4	23	84	9	67	37	1	1	58	1.20
40346286--40346363	14	5.1	14	68	24	50	33	7	14	44	1.73
40346309--40346348	20	2.0	20	90	0	62	27	10	12	50	1.72
40346294--40346360	34	1.9	35	93	3	118	31	7	13	47	1.70
40347842--40347882	20	2.0	21	90	4	66	53	2	0	43	1.13
40353017--40353061	23	2.0	23	82	8	56	57	13	4	24	1.54
40354719--40354772	19	2.8	19	86	8	74	62	0	0	37	0.95
40354719--40354769	20	2.6	20	87	9	70	64	0	0	35	0.94
40355891--40355936	24	1.9	24	82	8	58	43	2	4	50	1.34
40364529--40364580	20	2.6	19	75	6	59	21	7	3	67	1.32
40368130--40368220	46	2.0	46	93	0	155	34	23	19	23	1.97
40374207--40374312	33	3.2	33	80	0	122	31	16	24	28	1.96
40377695--40377811	62	1.9	60	82	5	146	48	3	5	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40379507--40379537	16	1.9	16	100	0	62	74	6	6	12	1.21
40383765--40383808	23	1.9	23	95	0	79	13	27	34	25	1.93
40395947--40396068	23	5.3	23	83	3	156	30	24	20	24	1.99
40395954--40396068	46	2.5	46	92	0	185	31	24	20	23	1.98
40396282--40396320	18	2.2	17	86	13	53	46	20	0	33	1.51
40406389--40406424	13	2.8	13	82	0	54	80	0	0	19	0.71
40411999--40412037	20	2.0	20	94	0	69	33	17	12	35	1.88
40413402--40413444	21	2.0	21	86	0	59	23	13	27	34	1.93
40416564--40416637	35	2.1	35	92	0	121	47	22	5	24	1.72
40417832--40417897	23	2.9	23	80	8	82	27	1	4	66	1.20
40424752--40424974	40	5.6	40	83	6	213	24	20	27	27	1.99
40424752--40424976	80	2.8	79	82	7	242	24	20	28	27	1.99
40424827--40425009	79	2.3	80	81	1	217	25	20	27	26	1.99
40424752--40425009	119	2.2	120	80	4	281	25	20	27	26	1.99
40435753--40435779	14	1.9	14	100	0	54	88	0	11	0	0.50
40436683--40436885	90	2.3	86	87	4	280	32	21	12	33	1.91
40436887--40437007	60	2.0	61	87	4	174	29	20	14	34	1.93
40437078--40437136	20	2.9	21	77	10	59	67	1	3	27	1.16
40437145--40437237	29	3.2	28	77	8	96	59	1	6	33	1.30
40437110--40437278	18	8.8	18	67	15	74	62	1	7	28	1.29
40438117--40438207	45	2.0	45	95	0	164	17	6	25	50	1.70
40438597--40438774	98	1.8	98	81	2	223	17	17	34	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40440642--40440923	126	2.2	125	86	6	392	29	16	21	32	1.95
40442999--40443032	15	2.3	15	90	5	52	67	5	0	26	1.13
40443123--40443172	20	2.7	18	80	14	57	66	0	0	34	0.92
40443131--40443188	30	2.0	30	86	10	84	60	1	0	37	1.07
40443225--40443324	52	1.9	52	87	0	146	37	0	30	33	1.58
40443277--40443345	22	3.1	22	91	0	111	40	0	27	31	1.57
40443787--40443832	19	2.3	20	82	14	60	39	0	2	58	1.10
40443766--40443828	31	2.0	31	87	6	92	34	1	3	60	1.22
40445641--40445721	29	2.8	29	86	0	108	27	29	19	23	1.98
40445722--40445809	28	3.2	27	76	10	79	22	15	34	27	1.95
40445764--40445816	21	2.5	21	75	0	52	26	16	33	22	1.96
40458918--40459069	43	3.5	41	83	9	178	32	25	13	28	1.94
40463156--40463181	12	2.2	12	100	0	52	30	26	7	34	1.85
40464899--40465012	9	12.1	9	75	12	104	35	0	20	43	1.58
40464893--40465002	30	3.8	30	78	9	138	37	0	19	42	1.57
40464901--40465016	56	2.1	57	95	1	207	34	0	21	43	1.59
40465004--40465602	120	5.0	120	93	0	991	45	2	9	42	1.49
40465171--40465217	21	2.3	21	88	3	69	48	0	8	42	1.33
40465267--40465337	23	3.3	20	82	7	70	47	2	8	40	1.48
40465532--40465578	21	2.3	21	88	3	69	48	0	8	42	1.33
40468034--40468098	23	2.8	24	81	9	82	50	27	0	21	1.49
40468035--40468091	30	1.9	30	89	7	89	50	28	0	21	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40468082--40468133	21	2.5	21	77	0	68	53	30	0	15	1.42
40468368--40468613	115	2.1	115	82	3	300	31	22	16	30	1.96
40468580--40468674	40	2.4	40	85	0	118	22	25	22	30	1.99
40468450--40468830	195	1.9	196	87	1	559	27	22	19	30	1.98
40468620--40468989	155	2.4	155	89	1	555	26	21	19	32	1.97
40468742--40468851	40	2.8	40	79	5	105	25	22	22	29	1.99
40468911--40468988	40	2.0	40	89	0	120	20	21	20	37	1.95
40477145--40477188	23	1.9	23	86	9	63	56	2	9	31	1.43
40479874--40479967	50	1.9	50	82	8	122	51	2	10	36	1.49
40481755--40481959	41	4.9	41	76	8	178	32	20	19	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208