genome.fa.s18.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  177  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56058114--56058672	294	1.9	291	89	4	874	34	16	12	35	1.87
56060923--56060967	23	1.9	24	82	13	58	57	4	8	28	1.48
56061109--56061191	4	21.2	4	72	16	50	69	3	3	22	1.19
56061146--56061218	20	3.5	20	81	16	69	67	4	2	26	1.22
56061145--56061218	17	4.6	16	76	15	57	67	4	2	25	1.21
56062019--56062047	14	2.0	15	93	6	51	41	6	3	48	1.47
56063570--56063619	14	3.6	14	79	10	59	18	10	2	70	1.25
56065278--56065966	44	15.6	44	78	6	563	29	19	17	33	1.95
56065310--56065967	45	14.8	45	76	10	516	29	19	17	33	1.94
56065299--56065967	89	7.5	87	79	8	595	29	19	17	34	1.94
56071568--56071630	25	2.4	25	82	15	83	58	3	1	36	1.23
56077187--56077527	165	2.1	165	94	0	601	27	20	17	35	1.95
56081256--56081305	15	3.3	15	88	5	73	36	8	0	56	1.29
56084421--56084793	162	2.3	162	90	1	559	28	20	17	34	1.95
56092272--56092311	7	5.6	7	90	3	62	42	0	15	42	1.46
56098657--56098800	43	3.3	43	83	5	141	29	22	21	26	1.99
56104355--56104400	24	1.9	24	82	8	58	17	6	4	71	1.24
56104726--56104782	22	2.6	21	75	8	60	31	42	1	24	1.65
56104767--56104807	21	2.0	20	85	4	55	39	41	0	19	1.52
56104973--56105020	25	1.9	25	86	0	69	62	2	0	35	1.07
56105061--56105135	30	2.5	30	83	10	100	38	33	0	28	1.57
56105095--56105139	21	2.1	22	87	4	65	35	40	0	24	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56105288--56105321	7	4.9	7	92	0	59	26	55	2	14	1.53
56106061--56106218	41	3.9	41	88	0	246	29	25	23	21	1.99
56106279--56106406	40	3.2	40	82	2	150	18	22	24	34	1.96
56108775--56108817	22	2.0	22	86	9	61	60	2	2	34	1.22
56109635--56109689	23	2.4	23	93	0	92	21	7	29	41	1.80
56110641--56110667	2	13.5	2	100	0	54	51	0	0	48	1.00
56111129--56111475	162	2.1	162	96	0	631	26	21	17	34	1.95
56120736--56120760	3	8.3	3	100	0	50	68	0	0	32	0.90
56121136--56121187	21	2.4	22	90	6	79	36	28	23	11	1.90
56121136--56121201	21	3.0	21	82	8	78	36	24	22	16	1.94
56121155--56121223	23	3.0	23	84	0	75	37	17	20	24	1.93
56121728--56121772	5	9.0	5	95	0	81	37	0	2	60	1.09
56122916--56123028	23	5.0	23	86	5	133	18	23	23	34	1.96
56124478--56124513	18	1.9	18	88	5	54	50	8	0	41	1.33
56126207--56126252	18	2.5	18	86	10	58	19	0	4	76	0.96
56126218--56126251	12	2.8	12	90	4	50	20	0	2	76	0.92
56128280--56128329	25	2.0	24	81	11	57	26	0	8	66	1.19
56129301--56129354	20	2.7	19	83	11	63	29	11	22	37	1.89
56129510--56129545	17	2.1	18	89	5	56	47	13	5	33	1.67
56130425--56130494	28	2.4	28	86	9	88	35	0	1	62	1.04
56130450--56130505	27	2.0	28	86	3	78	32	0	3	64	1.11
56132939--56132963	11	2.3	11	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56132958--56133004	20	2.3	20	85	0	58	51	2	4	42	1.33
56138581--56138684	45	2.3	45	94	0	181	41	23	0	34	1.61
56139568--56139617	25	2.0	24	85	11	66	24	0	8	68	1.16
56144218--56144303	42	2.0	42	93	0	145	19	12	33	33	1.90
56146082--56146143	27	2.3	27	94	0	106	29	24	11	35	1.90
56155255--56155307	18	3.0	17	91	5	79	39	1	1	56	1.21
56155157--56155317	18	9.1	18	68	20	56	42	0	1	55	1.15
56155452--56155555	44	2.5	41	78	17	122	36	30	3	28	1.75
56155463--56155555	44	2.1	46	91	4	154	37	30	4	27	1.76
56155537--56155567	16	1.9	16	93	0	53	19	32	9	38	1.84
56157518--56157590	31	2.4	29	75	16	78	41	0	2	56	1.14
56160360--56160442	41	2.0	41	90	0	130	44	6	21	27	1.76
56164901--56164939	15	2.6	14	84	11	51	66	2	10	20	1.33
56164981--56165030	3	16.7	3	100	0	100	68	0	0	32	0.90
56170116--56170147	13	2.5	13	100	0	64	53	9	18	18	1.71
56170683--56171186	162	3.1	162	93	0	864	26	20	17	35	1.95
56179184--56179267	41	2.0	41	95	0	150	34	22	11	30	1.90
56187707--56187759	26	2.0	26	100	0	106	67	3	7	20	1.31
56187858--56187932	3	24.3	3	74	15	64	58	2	6	32	1.38
56189442--56189499	28	2.1	27	84	6	73	51	1	8	37	1.43
56189508--56189594	46	1.9	45	81	9	106	43	4	14	36	1.67
56189673--56189719	23	2.0	25	83	8	62	53	2	8	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56189770--56189803	3	11.3	3	87	0	50	61	0	5	32	1.20
56193893--56193950	18	3.1	19	70	9	64	39	3	3	53	1.35
56197378--56197427	25	2.0	25	88	7	75	56	10	32	2	1.44
56199310--56199345	18	2.0	18	100	0	72	27	22	5	44	1.75
56201961--56201999	20	1.9	21	89	5	62	61	5	5	28	1.39
56202489--56202530	21	1.9	22	85	9	59	42	2	0	54	1.13
56202839--56202905	28	2.4	28	73	9	73	46	1	0	52	1.09
56205644--56205717	24	3.1	24	73	7	69	24	10	9	55	1.64
56205643--56205717	25	3.1	25	69	7	64	24	10	9	56	1.63
56207730--56207802	11	6.6	11	72	25	57	35	4	0	60	1.16
56207742--56207813	31	2.3	31	88	7	101	33	4	0	62	1.14
56207725--56207806	42	1.9	43	97	2	157	34	3	0	62	1.13
56208959--56209089	62	2.1	64	79	13	148	61	6	6	24	1.46
56209276--56209314	16	2.4	17	82	8	53	51	0	10	38	1.36
56209347--56209382	18	2.1	16	90	10	54	61	0	5	33	1.19
56209531--56209567	15	2.5	15	90	0	56	67	0	0	32	0.91
56209528--56209566	12	3.3	12	89	10	55	66	0	0	33	0.92
56209535--56209572	12	3.2	12	89	10	53	65	0	0	34	0.93
56210827--56210875	8	6.4	8	84	15	68	24	51	12	12	1.73
56210821--56210870	22	2.3	22	86	6	66	24	54	10	12	1.67
56211044--56211111	17	3.8	17	74	11	73	25	5	14	54	1.62
56212790--56212840	21	2.5	21	93	3	86	39	23	1	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56214689--56215033	165	2.1	162	87	1	510	27	20	16	36	1.94
56216789--56216829	21	2.0	21	90	0	64	21	34	7	36	1.82
56227950--56227985	18	1.9	18	88	5	54	50	8	0	41	1.33
56232750--56232803	20	2.7	19	83	11	63	27	12	22	37	1.91
56236559--56236618	3	19.3	3	83	6	75	35	1	1	61	1.16
56236559--56236618	25	2.4	25	91	0	93	35	1	1	61	1.16
56240150--56240197	25	2.0	23	84	11	62	33	10	4	52	1.55
56242933--56242967	16	2.2	16	94	0	61	31	37	0	31	1.58
56247992--56248037	23	2.0	23	95	0	83	43	10	8	36	1.71
56248066--56248097	13	2.5	13	100	0	64	53	9	18	18	1.71
56258422--56258470	23	2.1	23	84	0	62	40	16	18	24	1.90
56260789--56260824	13	2.8	13	86	0	54	22	0	2	75	0.94
56262826--56262875	25	2.0	24	81	11	57	26	0	8	66	1.19
56264054--56264090	17	2.1	18	90	5	58	45	16	5	32	1.70
56264165--56264199	7	5.0	7	89	0	52	62	0	0	37	0.95
56264166--56264212	14	3.4	14	82	5	51	63	2	0	34	1.06
56272010--56272047	20	2.0	19	90	10	60	68	0	0	31	0.90
56273657--56273753	41	2.4	41	87	0	140	34	30	15	19	1.93
56281274--56281424	73	2.1	73	100	0	302	48	9	3	38	1.54
56281546--56281592	18	2.5	19	82	10	60	59	0	4	36	1.17
56286129--56286184	21	2.6	22	86	5	71	75	5	1	17	1.09
56297920--56297989	36	1.9	37	94	2	124	47	2	12	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56303584--56303620	9	4.1	9	92	0	65	29	10	13	45	1.77
56303935--56303979	23	2.0	23	91	4	74	46	17	4	31	1.68
56303935--56303989	22	2.5	23	88	5	78	43	18	3	34	1.67
56305411--56305514	41	2.6	41	78	1	111	22	24	24	29	1.99
56310310--56310356	23	2.0	24	84	12	62	53	8	17	21	1.70
56316729--56316756	3	9.3	3	100	0	56	0	0	67	32	0.91
56330028--56330079	24	2.1	23	82	10	59	34	3	0	61	1.14
56339688--56339724	18	2.1	18	94	0	65	48	18	16	16	1.81
56341694--56341738	18	2.5	18	82	7	56	55	2	0	42	1.12
56341810--56341875	19	3.4	19	73	10	62	57	3	9	30	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208